Internalization and accumulation of model lignin breakdown products in bacteria and fungi

Barnhart-Dailey, Meghan C.; Ye, Dongmei; Hayes, Dulce C.; Maes, Danae; Simoes, Casey T.; Appelhans, Leah; Carroll-Portillo, Amanda; Kent, Michael S.; Timlin, Jerilyn A.

doi:10.1186/s13068-019-1494-8

Internalization and accumulation of model lignin breakdown products in bacteria and fungi

Journal Article · Wed Jul 03 00:00:00 EDT 2019 · Biotechnology for Biofuels

DOI:https://doi.org/10.1186/s13068-019-1494-8· OSTI ID:1618765

Barnhart-Dailey, Meghan C.; Ye, Dongmei; Hayes, Dulce C.; Maes, Danae; Simoes, Casey T.; Appelhans, Leah; Carroll-Portillo, Amanda; Kent, Michael S.;

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Research Organization:: Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States)

Sponsoring Organization:: USDOE; USDOE National Nuclear Security Administration (NNSA); USDOE National Nuclear Security Administration (NNSA), Office of Defense Nuclear Nonproliferation (NA-20)

Grant/Contract Number:: AC04-94AL85000; NA0003525

OSTI ID:: 1618765

Alternate ID(s):: OSTI ID: 1559560

Report Number(s):: SAND--2019-9902J; 175; PII: 1494

Journal Information:: Biotechnology for Biofuels, Journal Name: Biotechnology for Biofuels Journal Issue: 1 Vol. 12; ISSN 1754-6834

Publisher:: Springer Science + Business MediaCopyright Statement

Country of Publication:: Netherlands

Language:: English

References (44)

Utilization of dimeric lignin model compounds by mixed bacterial cultures Pellinen, Jukka; V�is�nen, Eino; Salkinoja-Salonen, Mirja Applied Microbiology and Biotechnology, Vol. 20, Issue 1 https://doi.org/10.1007/BF00254650	journal	July 1984
Vanillate hydroxylase from the white rot basidiomycete Phanerochaete chrysosporium Yajima, Yasuo; Enoki, Akio; Mayfield, Mary B. Archives of Microbiology, Vol. 123, Issue 3 https://doi.org/10.1007/BF00406669	journal	December 1979
The acetate kinase ofClostridum acetobutylicum strain P262 Diez-Gonzalez, Francisco; Russell, James B.; Hunter, Jean B. Archives of Microbiology, Vol. 166, Issue 6 https://doi.org/10.1007/BF01682990	journal	December 1996
Biodegradation of two tetrameric lignin model compounds by a mixed bacterial culture Jokela, Jouni; Pellinen, Jukka; Salkinoja-Salonen, Mirja Applied Microbiology and Biotechnology, Vol. 23, Issue 1 https://doi.org/10.1007/BF02660116	journal	November 1985
Population-level coordination of pigment response in individual cyanobacterial cells under altered nitrogen levels Murton, Jaclyn; Nagarajan, Aparna; Nguyen, Amelia Y. Photosynthesis Research, Vol. 134, Issue 2 https://doi.org/10.1007/s11120-017-0422-7	journal	July 2017
The white-rotting genus Phanerochaete is polyphyletic and distributed throughout the phleboid clade of the Polyporales (Basidiomycota) Wu, Sheng-Hua; Nilsson, Henrik R.; Chen, Cheng-Tao Fungal Diversity, Vol. 42, Issue 1 https://doi.org/10.1007/s13225-010-0031-7	journal	February 2010
Production of multiple ligninases by Phanerochaete chrysosporium: effect of selected growth conditions and use of a mutant strain Kirk, T. Kent; Croan, Suki; Tien, Ming Enzyme and Microbial Technology, Vol. 8, Issue 1 https://doi.org/10.1016/0141-0229(86)90006-2	journal	January 1986
Kenaf biomass biodecomposition by basidiomycetes and actinobacteria in submerged fermentation for production of carbohydrates and phenolic compounds Brzonova, Ivana; Kozliak, Evguenii; Kubátová, Alena Bioresource Technology, Vol. 173 https://doi.org/10.1016/j.biortech.2014.09.057	journal	December 2014
Biodegradation of lignin by fungi, bacteria and laccases Asina, Fnu; Brzonova, Ivana; Voeller, Keith Bioresource Technology, Vol. 220 https://doi.org/10.1016/j.biortech.2016.08.016	journal	November 2016
Biological valorization of low molecular weight lignin Abdelaziz, Omar Y.; Brink, Daniel P.; Prothmann, Jens Biotechnology Advances, Vol. 34, Issue 8 https://doi.org/10.1016/j.biotechadv.2016.10.001	journal	December 2016
Fermentative energy conversion: Renewable carbon source to biofuels (ethanol) using Saccharomyces cerevisiae and downstream purification through solar driven membrane distillation and nanofiltration Kumar, Ramesh; Ghosh, Alak Kumar; Pal, Parimal Energy Conversion and Management, Vol. 150 https://doi.org/10.1016/j.enconman.2017.08.054	journal	October 2017
Biological valorization strategies for converting lignin into fuels and chemicals Chen, Zhu; Wan, Caixia Renewable and Sustainable Energy Reviews, Vol. 73 https://doi.org/10.1016/j.rser.2017.01.166	journal	June 2017
Fate of lignins in soils: A review Thevenot, Mathieu; Dignac, Marie-France; Rumpel, Cornelia Soil Biology and Biochemistry, Vol. 42, Issue 8 https://doi.org/10.1016/j.soilbio.2010.03.017	journal	August 2010
Development of a Clickable Designer Monolignol for Interrogation of Lignification in Plant Cell Walls Bukowski, Natalie; Pandey, Jyotsna L.; Doyle, Lucas Bioconjugate Chemistry, Vol. 25, Issue 12 https://doi.org/10.1021/bc500411u	journal	November 2014
Synthesis and Chiroptical Properties of Helical Polyallenes Bearing Chiral Amide Pendants Zhu, Yuan-Yuan; Yin, Ting-Ting; Li, Xue-Liang Macromolecules, Vol. 47, Issue 20 https://doi.org/10.1021/ma5019022	journal	October 2014
Single-cell RNA sequencing technologies and bioinformatics pipelines Hwang, Byungjin; Lee, Ji Hyun; Bang, Duhee Experimental & Molecular Medicine, Vol. 50, Issue 8 https://doi.org/10.1038/s12276-018-0071-8	journal	August 2018
Lignin Valorization: Two Hybrid Biochemical Routes for the Conversion of Polymeric Lignin into Value-added Chemicals Wu, Weihua; Dutta, Tanmoy; Varman, Arul M. Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-07895-1	journal	August 2017
Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria Salvachúa, Davinia; Karp, Eric M.; Nimlos, Claire T. Green Chemistry, Vol. 17, Issue 11 https://doi.org/10.1039/C5GC01165E	journal	January 2015
Copper-catalyzed click reaction on/in live cells Li, Siheng; Wang, Lin; Yu, Fei Chemical Science, Vol. 8, Issue 3 https://doi.org/10.1039/C6SC02297A	journal	January 2017
Chemicals from lignin: an interplay of lignocellulose fractionation, depolymerisation, and upgrading Schutyser, W.; Renders, T.; Van den Bosch, S. Chemical Society Reviews, Vol. 47, Issue 3 https://doi.org/10.1039/C7CS00566K	journal	January 2018
Predicting lignin depolymerization yields from quantifiable properties using fractionated biorefinery lignins Phongpreecha, Thanaphong; Hool, Nicholas C.; Stoklosa, Ryan J. Green Chem., Vol. 19, Issue 21 https://doi.org/10.1039/C7GC02023F	journal	January 2017
Pathways for degradation of lignin in bacteria and fungi Bugg, Timothy D. H.; Ahmad, Mark; Hardiman, Elizabeth M. Natural Product Reports, Vol. 28, Issue 12, p. 1883-1896 https://doi.org/10.1039/c1np00042j	journal	January 2011
Lignin valorization through integrated biological funneling and chemical catalysis Linger, J. G.; Vardon, D. R.; Guarnieri, M. T. Proceedings of the National Academy of Sciences, Vol. 111, Issue 33, p. 12013-12018 https://doi.org/10.1073/pnas.1410657111	journal	August 2014
Toward engineering E. coli with an autoregulatory system for lignin valorization Wu, Weihua; Liu, Fang; Singh, Seema Proceedings of the National Academy of Sciences, Vol. 115, Issue 12 https://doi.org/10.1073/pnas.1720129115	journal	March 2018
Novosphingobium aromaticivorans uses a Nu-class glutathione S -transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin Kontur, Wayne S.; Bingman, Craig A.; Olmsted, Charles N. Journal of Biological Chemistry, Vol. 293, Issue 14 https://doi.org/10.1074/jbc.RA117.001268	journal	February 2018
Carboxylic Acids Produced Through Oxidative Cleavage of Aromatic Rings During Degradation of Lignin in Spruce Wood by Phanerochaete Chrysosporium Chen, Chen-Loung; Chang, Hou-Min; Kirk, T. Kent Journal of Wood Chemistry and Technology, Vol. 3, Issue 1 https://doi.org/10.1080/02773818308085150	journal	January 1983
Lignin-modifying enzymes from selected white-rot fungi: production and role from in lignin degradation Hatakka, Annele FEMS Microbiology Reviews, Vol. 13, Issue 2-3 https://doi.org/10.1111/j.1574-6976.1994.tb00039.x	journal	March 1994
Antimicrobial activity of phenolic compounds identified in wild mushrooms, SAR analysis and docking studies Alves, M. J.; Ferreira, I. C. F. R.; Froufe, H. J. C. Journal of Applied Microbiology, Vol. 115, Issue 2 https://doi.org/10.1111/jam.12196	journal	May 2013
DdvK, a Novel Major Facilitator Superfamily Transporter Essential for 5,5′-Dehydrodivanillate Uptake by Sphingobium sp. Strain SYK-6 Mori, Kosuke; Niinuma, Koh; Fujita, Masaya Applied and Environmental Microbiology, Vol. 84, Issue 20 https://doi.org/10.1128/AEM.01314-18	journal	August 2018
Differential Expression in Phanerochaete chrysosporium of Membrane-Associated Proteins Relevant to Lignin Degradation Shary, S.; Kapich, A. N.; Panisko, E. A. Applied and Environmental Microbiology, Vol. 74, Issue 23 https://doi.org/10.1128/AEM.01997-08	journal	October 2008
Experimental Evolution of Escherichia coli K-12 in the Presence of Proton Motive Force (PMF) Uncoupler Carbonyl Cyanide m -Chlorophenylhydrazone Selects for Mutations Affecting PMF-Driven Drug Efflux Pumps Griffith, Jessie M.; Basting, Preston J.; Bischof, Katarina M. Applied and Environmental Microbiology, Vol. 85, Issue 5 https://doi.org/10.1128/AEM.02792-18	journal	December 2018
Comparative Growth of Natural Bacterial Isolates on Various Lignin-Related Compounds Gonzalez, B.; Merino, A.; Almeida, M. Applied and Environmental Microbiology, Vol. 52, Issue 6 https://doi.org/10.1128/AEM.52.6.1428-1432.1986	journal	January 1986
Initial Steps in the Pathway for Bacterial Degradation of Two Tetrameric Lignin Model Compounds Jokela, Jouni; Pellinen, Jukka; Salkinoja-Salonen, Mirja Applied and Environmental Microbiology, Vol. 53, Issue 11 https://doi.org/10.1128/AEM.53.11.2642-2649.1987	journal	January 1987
Influence of Molecular Size and Ligninase Pretreatment on Degradation of Lignins by Xanthomonas sp. Strain 99 Kern, Hartmut W.; Kirk, T. Kent Applied and Environmental Microbiology, Vol. 53, Issue 9 https://doi.org/10.1128/AEM.53.9.2242-2246.1987	journal	January 1987
Characterization of the Escherichia coli AaeAB Efflux Pump: a Metabolic Relief Valve? Van Dyk, T. K.; Templeton, L. J.; Cantera, K. A. Journal of Bacteriology, Vol. 186, Issue 21 https://doi.org/10.1128/JB.186.21.7196-7204.2004	journal	October 2004
Biodegradation of Aromatic Compounds by Escherichia coli Diaz, E.; Ferrandez, A.; Prieto, M. A. Microbiology and Molecular Biology Reviews, Vol. 65, Issue 4 https://doi.org/10.1128/MMBR.65.4.523-569.2001	journal	December 2001
PcaK, a high-affinity permease for the aromatic compounds 4-hydroxybenzoate and protocatechuate from Pseudomonas putida. Nichols, N. N.; Harwood, C. S. Journal of Bacteriology, Vol. 179, Issue 16 https://doi.org/10.1128/jb.179.16.5056-5061.1997	journal	August 1997
A discussion of microstructural changes in wood during decomposition by white rot basidiomycetes Otjen, Lewis; Blanchette, Robert A. Canadian Journal of Botany, Vol. 64, Issue 5 https://doi.org/10.1139/b86-121	journal	May 1986
Lignin Biosynthesis Boerjan, Wout; Ralph, John; Baucher, Marie Annual Review of Plant Biology, Vol. 54, Issue 1, p. 519-546 https://doi.org/10.1146/annurev.arplant.54.031902.134938	journal	June 2003
Catabolism of coniferyl aldehyde, ferulic acid and p-coumaric acid by Saccharomyces cerevisiae yields less toxic products Adeboye, Peter Temitope; Bettiga, Maurizio; Aldaeus, Fredrik Microbial Cell Factories, Vol. 14, Issue 1 https://doi.org/10.1186/s12934-015-0338-x	journal	September 2015
Genetic and Biochemical Investigations on Bacterial Catabolic Pathways for Lignin-Derived Aromatic Compounds Masai, Eiji; Katayama, Yoshihiro; Fukuda, Masao Bioscience, Biotechnology, and Biochemistry, Vol. 71, Issue 1 https://doi.org/10.1271/bbb.60437	journal	January 2007
Mycelium Binding and Depolymerization of Synthetic ¹⁴ C-Labeled Lignin During Decomposition by Phanerochaete chrysosporium Chua, Miranda G. S.; Choi, Suki; Kirk, T. Kent Holzforschung, Vol. 37, Issue 2 https://doi.org/10.1515/hfsg.1983.37.2.55	journal	January 1983
Assessment of 30 White Rot Basidiomycetes for Selective Lignin Degradation Otjen, Lewis; Blanchette, Robert; Effland, Marilyn Holzforschung, Vol. 41, Issue 6 https://doi.org/10.1515/hfsg.1987.41.6.343	journal	January 1987
Destruction of Escherichia coli O157:H7 by Vanillic Acid in Unpasteurized Juice from Six Apple Cultivars Moon, Kwan Deog; Delaquis, Pascal; Toivonen, Peter Journal of Food Protection, Vol. 69, Issue 3 https://doi.org/10.4315/0362-028X-69.3.542	journal	March 2006

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Internalization and accumulation of model lignin breakdown products in bacteria and fungi

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References (44)

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