Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

Journal Article · · Biotechnology for Biofuels

Not Available

Sponsoring Organization:
USDOE
Grant/Contract Number:
EE0006315
OSTI ID:
1618627
Alternate ID(s):
OSTI ID: 1256492
OSTI ID: 1378685
Journal Information:
Biotechnology for Biofuels, Journal Name: Biotechnology for Biofuels Journal Issue: 1 Vol. 8; ISSN 1754-6834
Publisher:
Springer Science + Business MediaCopyright Statement
Country of Publication:
Netherlands
Language:
English

References (108)

Metabolic costs of amino acid and protein production in Escherichia coli journal July 2013
Differential effects of nitrogen and sulfur deprivation on growth and biodiesel feedstock production of Chlamydomonas reinhardtii journal March 2012
Proteomic profiling of oil bodies isolated from the unicellular green microalga Chlamydomonas reinhardtii: With focus on proteins involved in lipid metabolism journal September 2011
Methods to Reconstruct and Compare Transcriptional Regulatory Networks book January 2009
Using Flux Balance Analysis to Guide Microbial Metabolic Engineering book November 2011
Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production journal April 2013
De Novo Sequencing and Global Transcriptome Analysis of Nannochloropsis sp. (Eustigmatophyceae) Following Nitrogen Starvation journal October 2012
Structure and biosynthesis of apolipoprotein B journal February 1987
The Immunological Functions of Saposins book January 2010
Advances in microalgae engineering and synthetic biology applications for biofuel production journal June 2013
A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell journal December 2007
Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana journal September 2014
Correlation of mRNA and protein in complex biological samples journal October 2009
A chloroplast pathway for the de novo biosynthesis of triacylglycerol in Chlamydomonas reinhardtii journal May 2011
Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169 journal March 2012
Genomics and gene transcription kinetics in yeast journal May 2007
Transcriptome analysis of Chlamydomonas reinhardtii during the process of lipid accumulation journal April 2013
HILIC- and SCX-Based Quantitative Proteomics of Chlamydomonas reinhardtii during Nitrogen Starvation Induced Lipid and Carbohydrate Accumulation journal October 2012
Integrated Quantitative Analysis of Nitrogen Stress Response in Chlamydomonas reinhardtii Using Metabolite and Protein Profiling journal February 2014
Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale models journal January 2010
Metabolic network reconstruction of Chlamydomonas offers insight into light‐driven algal metabolism journal January 2011
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii journal May 2007
What is flux balance analysis? journal March 2010
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation journal May 2010
Dynamics of single mRNP nucleocytoplasmic transport and export through the nuclear pore in living cells journal May 2010
Experimental evolution of an alternating uni- and multicellular life cycle in Chlamydomonas reinhardtii journal November 2013
Wisdom of crowds for robust gene network inference journal July 2012
Advantages and limitations of current network inference methods journal August 2010
Mechanosensitive physiology of chlamydomonas reinhardtii under direct membrane distortion journal April 2014
Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis journal June 2014
Phosphorylation of Arabidopsis transketolase at Ser428 provides a potential paradigm for the metabolic control of chloroplast carbon metabolism journal February 2014
ACCUMULATION OF OLEIC ACID IN HAEMATOCOCCUS PLUVIALIS (CHLOROPHYCEAE) UNDER NITROGEN STARVATION OR HIGH LIGHT IS CORRELATED WITH THAT OF ASTAXANTHIN ESTERS 1 journal April 2002
Knockdown of limiting-CO2-induced gene HLA3 decreases HCOFormula transport and photosynthetic Ci affinity in Chlamydomonas reinhardtii journal March 2009
Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis journal September 2010
Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning journal June 2011
Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth journal November 2013
Psr1, a nuclear localized protein that regulates phosphorus metabolism in Chlamydomonas journal December 1999
The Metabolome of Chlamydomonas reinhardtii following Induction of Anaerobic H 2 Production by Sulfur Depletion journal May 2009
Three Acyltransferases and Nitrogen-responsive Regulator Are Implicated in Nitrogen Starvation-induced Triacylglycerol Accumulation in Chlamydomonas journal March 2012
System Response of Metabolic Networks in Chlamydomonas reinhardtii to Total Available Ammonium journal July 2012
The Sep15 protein family: Roles in disulfide bond formation and quality control in the endoplasmic reticulum journal January 2007
STAR: ultrafast universal RNA-seq aligner journal October 2012
Bridging the gap between transcriptome and proteome measurements identifies post-translationally regulated genes journal September 2013
The plant RWP-RK transcription factors: key regulators of nitrogen responses and of gametophyte development journal July 2014
Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii journal May 2015
Molecular cloning of a small DNA binding protein with specificity for a tissue-specific negative element within the rps 1 promoter journal January 1995
STRING 8--a global view on proteins and their functional interactions in 630 organisms journal January 2009
BioNumbers—the database of key numbers in molecular and cell biology journal October 2009
Phytozome: a comparative platform for green plant genomics journal November 2011
Molecular mechanisms of system responses to novel stimuli are predictable from public data journal October 2013
Gene Ontology Consortium: going forward journal January 2014
A high-resolution network model for global gene regulation in Mycobacterium tuberculosis journal September 2014
A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii journal May 2007
A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers journal June 2012
A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen journal October 2013
An Anaplerotic Role for Mitochondrial Carbonic Anhydrase in Chlamydomonas reinhardtii journal August 2003
Metabolite Profiling of Chlamydomonas reinhardtii under Nutrient Deprivation journal November 2005
Functional Analyses of Cytosolic Glucose-6-Phosphate Dehydrogenases and Their Contribution to Seed Oil Accumulation in Arabidopsis journal November 2007
Tissue-Specific Expression Patterns of Arabidopsis NF-Y Transcription Factors Suggest Potential for Extensive Combinatorial Complexity journal November 2008
Changes in Transcript Abundance in Chlamydomonas reinhardtii following Nitrogen Deprivation Predict Diversion of Metabolism journal October 2010
The Regulation of Photosynthetic Structure and Function during Nitrogen Deprivation in Chlamydomonas reinhardtii journal December 2014
The Role of Pyruvate Dehydrogenase and Acetyl-Coenzyme A Synthetase in Fatty Acid Synthesis in Developing Arabidopsis Seeds journal June 2000
Antisense Expression of an Arabidopsis Ran Binding Protein Renders Transgenic Roots Hypersensitive to Auxin and Alters Auxin-Induced Root Growth and Development by Arresting Mitotic Progress journal December 2001
NAB1 Is an RNA Binding Protein Involved in the Light-Regulated Differential Expression of the Light-Harvesting Antenna of Chlamydomonas reinhardtii journal November 2005
RNA-Seq Analysis of Sulfur-Deprived Chlamydomonas Cells Reveals Aspects of Acclimation Critical for Cell Survival journal June 2010
The Plastid Isoform of Triose Phosphate Isomerase Is Required for the Postgerminative Transition from Heterotrophic to Autotrophic Growth in Arabidopsis journal January 2010
Stress-Induced GSK3 Regulates the Redox Stress Response by Phosphorylating Glucose-6-Phosphate Dehydrogenase in Arabidopsis journal August 2012
A Galactoglycerolipid Lipase Is Required for Triacylglycerol Accumulation and Survival Following Nitrogen Deprivation in Chlamydomonas reinhardtii journal November 2012
Systems-Level Analysis of Nitrogen Starvation-Induced Modifications of Carbon Metabolism in a Chlamydomonas reinhardtii Starchless Mutant journal November 2013
Choreography of Transcriptomes and Lipidomes of Nannochloropsis Reveals the Mechanisms of Oil Synthesis in Microalgae journal April 2014
Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism journal April 2014
Methylcrotonyl-CoA Carboxylase Regulates Triacylglycerol Accumulation in the Model Diatom Phaeodactylum tricornutum journal April 2014
Cytosolic Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenases Affect Arabidopsis Cellular Metabolism and Promote Seed Oil Accumulation journal July 2014
Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii: Artificial miRNAs in Chlamydomonas journal January 2009
A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas reinhardtii: A revised mineral nutrient supplement for Chlamydomonas journal March 2011
Increasing seed oil content in oil-seed rape (Brassica napus L.) by over-expression of a yeast glycerol-3-phosphate dehydrogenase under the control of a seed-specific promoter journal May 2007
Enhancement of extraplastidic oil synthesis in Chlamydomonas reinhardtii using a type-2 diacylglycerol acyltransferase with a phosphorus starvation-inducible promoter journal June 2014
A refined genome-scale reconstruction of Chlamydomonas metabolism provides a platform for systems-level analyses journal November 2015
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions journal October 2007
An Outlook on Microalgal Biofuels journal August 2010
Metabolic Engineering of Escherichia coli for Efficient Conversion of Glycerol to Ethanol journal September 2009
The Path to Triacylglyceride Obesity in the sta6 Strain of Chlamydomonas reinhardtii journal February 2014
RNA Interference Silencing of a Major Lipid Droplet Protein Affects Lipid Droplet Size in Chlamydomonas reinhardtii journal November 2009
Successful Transient Expression of Cas9 and Single Guide RNA Genes in Chlamydomonas reinhardtii journal September 2014
Rapid Triacylglycerol Turnover in Chlamydomonas reinhardtii Requires a Lipase with Broad Substrate Specificity journal October 2012
Algal Lipid Bodies: Stress Induction, Purification, and Biochemical Characterization in Wild-Type and Starchless Chlamydomonas reinhardtii journal October 2009
Structural Correlates of Cytoplasmic and Chloroplast Lipid Body Synthesis in Chlamydomonas reinhardtii and Stimulation of Lipid Body Production with Acetate Boost journal October 2011
Chaperone-Mediated Protein Folding journal April 1999
Cdc48: A Swiss Army Knife of Cell Biology journal January 2013
Characterization and differential expression of microRNAs elicited by sulfur deprivation in Chlamydomonas reinhardtii journal January 2012
Oil accumulation in the model green alga Chlamydomonas reinhardtii: characterization, variability between common laboratory strains and relationship with starch reserves journal January 2011
Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum journal January 2012
Glycerol and neutral lipid production in the oleaginous marine diatom Phaeodactylum tricornutum promoted by overexpression of glycerol-3-phosphate dehydrogenase journal January 2014
Lipid accumulation and biosynthesis genes response of the oleaginous Chlorella pyrenoidosa under three nutrition stressors journal January 2014
Systematically programmed adaptive evolution reveals potential role of carbon and nitrogen pathways during lipid accumulation in Chlamydomonas reinhardtii journal September 2014
System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation journal December 2014
Interdependency of Brassinosteroid and Auxin Signaling in Arabidopsis journal August 2004
A Comprehensive, Quantitative, and Genome-Wide Model of Translation journal July 2010
Transimulation - Protein Biosynthesis Web Service journal September 2013
Genome-Wide Identification of Regulatory Elements and Reconstruction of Gene Regulatory Networks of the Green Alga Chlamydomonas reinhardtii under Carbon Deprivation journal November 2013
Rapid Induction of Lipid Droplets in Chlamydomonas reinhardtii and Chlorella vulgaris by Brefeldin A journal December 2013
Proteomic Analysis in Nitrogen-Deprived Isochrysis galbana during Lipid Accumulation journal December 2013
Using Natural Selection to Explore the Adaptive Potential of Chlamydomonas reinhardtii journal March 2014
A system‐level model for the microbial regulatory genome journal July 2014
Identification of AGO3-Associated miRNAs and Computational Prediction of Their Targets in the Green Alga Chlamydomonas reinhardtii journal March 2015
Succinate Overproduction: A Case Study of Computational Strain Design Using a Comprehensive Escherichia coli Kinetic Model journal January 2015
Post-Transcriptional Control of Chloroplast Gene Expression journal January 2009
Growth and reproduction of Daphnia galeata in response to changes in fatty acids, phosphorus, and nitrogen in Chlamydomonas reinhardtii journal November 1997

Similar Records

Related Subjects