UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

Qi, Peng; Gimode, Davis; Saha, Dipnarayan; Schröder, Stephan; Chakraborty, Debkanta; Wang, Xuewen; Dida, Mathews M.; Malmberg, Russell L.; Devos, Katrien M.

doi:10.1186/s12870-018-1316-3

UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

Journal Article · Fri Jun 15 00:00:00 EDT 2018 · BMC Plant Biology

DOI:https://doi.org/10.1186/s12870-018-1316-3· OSTI ID:1618604

Qi, Peng; Gimode, Davis; Saha, Dipnarayan; Schröder, Stephan; Chakraborty, Debkanta; Wang, Xuewen; Dida, Mathews M.; Malmberg, Russell L.;

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Research Organization:: Univ. of Georgia, Athens, GA (United States)

Sponsoring Organization:: USDOE; USDOE Office of Science (SC)

Grant/Contract Number:: SC0010743

OSTI ID:: 1618604

Alternate ID(s):: OSTI ID: 1504909

Journal Information:: BMC Plant Biology, Journal Name: BMC Plant Biology Journal Issue: 1 Vol. 18; ISSN 1471-2229

Publisher:: Springer Science + Business MediaCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
Chromosomal rearrangements
E. indica
Eleusine coracana
Finger millet
GBS-pipeline
Genetic mapping
Genotyping-by-sequencing (GBS)
Paired-end reads
Polyploid
SNP calling

UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

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