Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

Yin, Hengfu; Guo, Hao-Bo; Weston, David J.; Borland, Anne M.; Ranjan, Priya; Abraham, Paul E.; Jawdy, Sara S.; Wachira, James; Tuskan, Gerald A.; Tschaplinski, Timothy J.; Wullschleger, Stan D.; Guo, Hong; Hettich, Robert L.; Gross, Stephen M.; Wang, Zhong; Visel, Axel; Yang, Xiaohan

doi:10.1186/s12864-018-4964-7

Title: Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

Journal Article · Mon Aug 06 00:00:00 EDT 2018 · BMC Genomics

DOI:https://doi.org/10.1186/s12864-018-4964-7· OSTI ID:1618568

Yin, Hengfu; Guo, Hao-Bo; Weston, David J.; Borland, Anne M.; Ranjan, Priya; Abraham, Paul E.; Jawdy, Sara S.; Wachira, James; Tuskan, Gerald A.; Tschaplinski, Timothy J.; Wullschleger, Stan D.; Guo, Hong; Hettich, Robert L.; Gross, Stephen M.; Wang, Zhong; Visel, Axel; Yang, Xiaohan

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Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE

Grant/Contract Number:: LDRD 5801; AC05-00OR22725; AC02-05CH11231

OSTI ID:: 1618568

Alternate ID(s):: OSTI ID: 1464029; OSTI ID: 1477358

Journal Information:: BMC Genomics, Journal Name: BMC Genomics Vol. 19 Journal Issue: 1; ISSN 1471-2164

Publisher:: Springer Science + Business MediaCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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Cited by: 25 works

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Crassulacean acid metabolism
Photosynthesis
Comparative genomics
Transcriptome
Positive selection
Circadian rhythm

Additional file 10: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939083 The current record is supplemented by this dataset	dataset	August 2018
Additional file 11: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939092 The current record is supplemented by this dataset	dataset	August 2018
Additional file 13: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939128.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 14: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939146 The current record is supplemented by this dataset	dataset	August 2018
Additional file 14: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939146.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 15: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939170 The current record is supplemented by this figure	figure	August 2018
Additional file 16: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939185 The current record is supplemented by this dataset	dataset	August 2018
Additional file 17: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939206.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 18: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939221 The current record is supplemented by this other	other	August 2018
Additional file 18: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939221.v1 The current record is supplemented by this other	other	August 2018
Additional file 19: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939239 The current record is supplemented by this dataset	dataset	August 2018
Additional file 1: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939254 The current record is supplemented by this dataset	dataset	August 2018
Additional file 20: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939275.v1 The current record is supplemented by this figure	figure	August 2018
Additional file 21: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939302 The current record is supplemented by this dataset	dataset	August 2018
Additional file 21: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yu, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939302.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 23: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939338 The current record is supplemented by this dataset	dataset	August 2018
Additional file 23: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939338.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 24: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939353 The current record is supplemented by this dataset	dataset	August 2018
Additional file 24: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Guo, Hao-Bo; Weston, David; Borland, Anne https://doi.org/10.6084/m9.figshare.6939353.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 2: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939377 The current record is supplemented by this dataset	dataset	August 2018
Additional file 2: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939377.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 3: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939389 The current record is supplemented by this dataset	dataset	August 2018
Additional file 3: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939389.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 4: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939404 The current record is supplemented by this dataset	dataset	August 2018
Additional file 4: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Guo, Hao-Bo; Weston, David; Borland, Anne https://doi.org/10.6084/m9.figshare.6939404.v1 The current record is supplemented by this figure	figure	August 2018
Additional file 5: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939419 The current record is supplemented by this dataset	dataset	June 2018
Additional file 6: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Guo, Hao-Bo; Weston, David; Borland, Anne https://doi.org/10.6084/m9.figshare.6939428.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 7: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939446.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 8: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939455 The current record is supplemented by this figure	figure	August 2018
Additional file 8: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939455.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 9: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Guo, Hao-Bo; Weston, David; Borland, Anne https://doi.org/10.6084/m9.figshare.6939464 The current record is supplemented by this figure	figure	August 2018
Additional file 9: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939464.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 11: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939092.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 12: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939116 The current record is supplemented by this dataset	dataset	August 2018
Additional file 15: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939170.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 1: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939254.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 20: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939275 The current record is supplemented by this dataset	dataset	June 2018
Additional file 25: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Guo, Hao-Bo; Weston, David; Borland, Anne https://doi.org/10.6084/m9.figshare.6939368 The current record is supplemented by this dataset	dataset	August 2018
Additional file 5: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939419.v1 The current record is supplemented by this dataset	dataset	August 2018
Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave [Supplemental Data] Guo, Hao-Bo; Weston, David; Borland, Anne https://doi.org/10.6084/m9.figshare.c.4190408 The current record is supplemented by this collection	collection	August 2018
Additional file 12: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939116.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 16: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939185.v1 The current record is supplemented by this figure	figure	August 2018
Additional file 17: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939206 The current record is supplemented by this dataset	dataset	August 2018
Additional file 19: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Guo, Hao-Bo; Weston, David; Borland, Anne https://doi.org/10.6084/m9.figshare.6939239.v1 The current record is supplemented by this figure	figure	August 2018
Additional file 22: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939317 The current record is supplemented by this dataset	dataset	August 2018
Additional file 6: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939428 The current record is supplemented by this dataset	dataset	August 2018
Additional file 7: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Guo, Hao-Bo; Weston, David; Borland, Anne https://doi.org/10.6084/m9.figshare.6939446 The current record is supplemented by this figure	figure	August 2018
Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave [Supplementary Data] Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.c.4190408.v1 The current record is supplemented by this dataset	dataset	August 2018
Additional file 10: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave Yin, Hengfu; Guo, Hao-Bo; Weston, David https://doi.org/10.6084/m9.figshare.6939083.v1 The current record is supplemented by this dataset	dataset	August 2018