Toward molecular trait‐based ecology through integration of biogeochemical, geographical and metagenomic data
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journal
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January 2011 |
Roary: rapid large-scale prokaryote pan genome analysis
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journal
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July 2015 |
Decomposition responses to climate depend on microbial community composition
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journal
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November 2018 |
Microbial diversity and soil functions
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journal
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December 2003 |
Shifting the genomic gold standard for the prokaryotic species definition
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journal
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October 2009 |
The importance of resolving biogeographic patterns of microbial microdiversity
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journal
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January 2018 |
Predicting communities from functional traits
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journal
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September 2015 |
Utilization of different nitrogen sources by the marine cyanobacteria Prochlorococcus and Synechococcus
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journal
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July 2002 |
Microdiversity shapes the traits, niche space, and biogeography of microbial taxa: The ecological function of microdiversity
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journal
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March 2017 |
Relationship between Desiccation and Exopolysaccharide Production in a Soil Pseudomonas sp
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journal
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January 1992 |
Fast and accurate short read alignment with Burrows-Wheeler transform
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journal
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May 2009 |
Rebuilding community ecology from functional traits
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journal
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April 2006 |
Microbial response to simulated global change is phylogenetically conserved and linked with functional potential
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journal
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June 2015 |
Microbiomes in light of traits: A phylogenetic perspective
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journal
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November 2015 |
In Nature, There Is Only Diversity
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journal
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January 2018 |
Prochlorococcus, a Marine Photosynthetic Prokaryote of Global Significance
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journal
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March 1999 |
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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journal
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September 1997 |
Vive la différence: plant functional diversity matters to ecosystem processes
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journal
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November 2001 |
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
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journal
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June 2007 |
Temporal variation overshadows the response of leaf litter microbial communities to simulated global change
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journal
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May 2015 |
Photophysiology of the marine cyanobacterium Prochlorococcus: Ecotypic differences among cultured isolates
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journal
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May 1999 |
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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journal
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March 2010 |
Phylogenetic conservatism of functional traits in microorganisms
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journal
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December 2012 |
Ecology of Speciation in the Genus Bacillus
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journal
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January 2010 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
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journal
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March 2010 |
Mapping the niche space of soil microorganisms using taxonomy and traits
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journal
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August 2012 |
Microbial resource utilization traits and trade-offs: implications for community structure, functioning, and biogeochemical impacts at present and in the future
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journal
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April 2015 |
Patterns and Processes of Microbial Community Assembly
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journal
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September 2013 |
Microbial Biogeography: From Taxonomy to Traits
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journal
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May 2008 |
Global biogeography of Prochlorococcus genome diversity in the surface ocean
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journal
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February 2016 |
Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus
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journal
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April 2009 |
Desiccation tolerance of prokaryotes.
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journal
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January 1994 |
Search and clustering orders of magnitude faster than BLAST
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journal
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August 2010 |
Trait-Based Community Ecology of Phytoplankton
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journal
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December 2008 |
Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe
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journal
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August 2015 |
Functional traits explain phytoplankton community structure and seasonal dynamics in a marine ecosystem
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journal
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October 2012 |
Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
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journal
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June 1998 |
Bacterial Species and Speciation
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journal
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August 2001 |
Non-parametric multivariate analyses of changes in community structure
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journal
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March 1993 |
Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton
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journal
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May 2008 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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journal
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January 2014 |
Prokka: rapid prokaryotic genome annotation
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journal
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March 2014 |
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
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journal
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May 2012 |
A trait-based approach for modelling microbial litter decomposition
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journal
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May 2012 |
Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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journal
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October 2013 |
The NCBI Taxonomy database
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journal
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December 2011 |
Genotypic Diversity Within a Natural Coastal Bacterioplankton Population
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journal
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February 2005 |
Extracellular enzyme kinetics and thermodynamics along a climate gradient in southern California
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journal
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November 2017 |
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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journal
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May 2012 |
The Pfam protein families database: towards a more sustainable future
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journal
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December 2015 |
Links between Ammonia Oxidizer Community Structure, Abundance, and Nitrification Potential in Acidic Soils
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journal
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May 2011 |
Scaling from Traits to Ecosystems: Developing a General Trait Driver Theory via Integrating Trait-Based and Metabolic Scaling Theories
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book
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January 2015 |
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
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journal
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January 2018 |
Predicting changes in community composition and ecosystem functioning from plant traits: revisiting the Holy Grail
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journal
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October 2002 |
Niche Partitioning Among Prochlorococcus Ecotypes Along Ocean-Scale Environmental Gradients
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journal
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March 2006 |
PATRIC, the bacterial bioinformatics database and analysis resource
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journal
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November 2013 |
Fast gapped-read alignment with Bowtie 2
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journal
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March 2012 |
Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
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journal
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October 2006 |
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
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journal
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October 2009 |
Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits
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journal
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November 2017 |
Ecological Significance of Microdiversity: Identical 16S rRNA Gene Sequences Can Be Found in Bacteria with Highly Divergent Genomes and Ecophysiologies
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journal
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August 2004 |
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
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journal
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January 2011 |
Gene flow and the limits to natural selection
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journal
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April 2002 |
Quantitative and qualitative microscale distribution of bacteria in soil
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journal
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October 2001 |
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
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journal
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October 2010 |
The diversity and biogeography of soil bacterial communities
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journal
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January 2006 |
HMMER web server: interactive sequence similarity searching
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journal
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May 2011 |
Role of Extracellular Polysaccharide Production and Clays in the Desiccation Tolerance of Cowpea Bradyrhizobia1
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journal
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January 1986 |
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
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journal
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September 2008 |
Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa
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journal
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June 2018 |
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
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journal
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August 2003 |
Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium
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journal
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November 2016 |
Plant functional traits and environmental filters at a regional scale
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journal
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February 1998 |
The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies
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journal
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July 2010 |
Regression Modeling Strategies
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book
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January 2001 |
Microbial diversity and soil functions
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journal
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January 2017 |
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
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preprint
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January 2010 |