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Title: Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533 T , a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia

Journal Article · · Genome Announcements
 [1];  [1];  [2];  [3];  [3];  [3];  [4];  [5];  [3];  [3];  [6];  [7]
  1. Department of Biochemistry, Virginia Tech, Blacksburg, Virginia, USA
  2. Centre for Algorithmic Biotechnology, ITBM, St. Petersburg State University, St. Petersburg, Russia
  3. U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, USA
  4. Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA
  5. Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA, Winogradsky Institute of Microbiology, Research Center of Biotechnology Russian Academy of Sciences, Moscow, Russia
  6. U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, USA, Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA, Department of Biology, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia
  7. Department of Biochemistry, Virginia Tech, Blacksburg, Virginia, USA, Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA, Department of Biological Sciences, Virginia Tech, Blacksburg, Virginia, USA
+ Show Author Affiliations

Desulfurococcus amylolyticusZ-533T, a hyperthermophilic crenarcheon, ferments peptide and starch, generating acetate, isobutyrate, isovalerate, CO2, and hydrogen. UnlikeD. amylolyticusZ-1312, it cannot use cellulose and is inhibited by hydrogen. The reported draft genome sequence ofD. amylolyticusZ-533Twill help to understand the molecular basis for these differences.

Research Organization:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1608708
Alternate ID(s):
OSTI ID: 1393210
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Vol. 5 Journal Issue: 15; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (16)

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Reclassification of Desulfurococcus mobilis as a synonym of Desulfurococcus mucosus, Desulfurococcus fermentans and Desulfurococcus kamchatkensis as synonyms of Desulfurococcus amylolyticus, and emendation of the D. mucosus and D. amylolyticus species descriptions journal January 2016
PILER-CR: Fast and accurate identification of CRISPR repeats journal January 2007
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence journal March 1997
Complete Genome Sequence of the Anaerobic, Protein-Degrading Hyperthermophilic Crenarchaeon Desulfurococcus kamchatkensis journal December 2008
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata journal December 2011
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats journal June 2007
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4) journal October 2015
ALLPATHS: De novo assembly of whole-genome shotgun microreads journal February 2008
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads journal January 2009
HMMER web server: interactive sequence similarity searching journal May 2011
Infernal 1.0: inference of RNA alignments journal March 2009
IMG/M: integrated genome and metagenome comparative data analysis system journal October 2016
Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia journal September 2012
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
IMG ER: a system for microbial genome annotation expert review and curation journal June 2009

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