Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Stochastic embedding DFT: Theory and application to p -nitroaniline in water

Journal Article · · Journal of Chemical Physics
DOI:https://doi.org/10.1063/1.5110226· OSTI ID:1603537
 [1];  [2];  [2];  [3];  [1]
  1. Univ. of California, Los Angeles, CA (United States)
  2. Univ. of California, Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  3. Hebrew Univ. of Jerusalem (Israel). Fritz Haber Center for Molecular Dynamics, Inst. of Chemistry
Over this past decade, we combined the idea of stochastic resolution of identity with a variety of electronic structure methods. In our stochastic Kohn-Sham density functional theory (DFT) method, the density is an average over multiple stochastic samples, with stochastic errors that decrease as the inverse square root of the number of sampling orbitals. Here in this paper, we develop a stochastic embedding density functional theory method (se-DFT) that selectively reduces the stochastic error (specifically on the forces) for a selected subsystem(s). The motivation, similar to that of other quantum embedding methods, is that for many systems of practical interest, the properties are often determined by only a small subsystem. In stochastic embedding DFT, two sets of orbitals are used: a deterministic one associated with the embedded subspace and the rest, which is described by a stochastic set. The method agrees exactly with deterministic calculations in the limit of a large number of stochastic samples. We apply se-DFT to study a p-nitroaniline molecule in water, where the statistical errors in the forces on the system (the p-nitroaniline molecule) are reduced by an order of magnitude compared with nonembedding stochastic DFT.
Research Organization:
Energy Frontier Research Centers (EFRC) (United States). Photonics at Thermodynamic Limits (PTL); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
National Science Foundation (NSF); US-Israel Binational Science Foundation (BSF-NSF); USDOE; USDOE Office of Science (SC)
Grant/Contract Number:
AC02-05CH11231; SC0019140
OSTI ID:
1603537
Alternate ID(s):
OSTI ID: 1573428
Journal Information:
Journal of Chemical Physics, Journal Name: Journal of Chemical Physics Journal Issue: 17 Vol. 151; ISSN 0021-9606
Publisher:
American Institute of Physics (AIP)Copyright Statement
Country of Publication:
United States
Language:
English

References (40)

Development and testing of a general amber force field journal January 2004
GROMACS: A message-passing parallel molecular dynamics implementation journal September 1995
Quickstep: Fast and accurate density functional calculations using a mixed Gaussian and plane waves approach journal April 2005
Density functional embedding for molecular systems journal April 2006
Linear-scaling quantum mechanical calculations of biological molecules: The divide-and-conquer approach journal October 1998
Quantum Embedding Theories journal November 2016
Hybrid QM/MM Molecular Dynamics with AMOEBA Polarizable Embedding journal August 2017
Accurate Dissociation of Chemical Bonds Using DFT-in-DFT Embedding Theory with External Orbital Orthogonality journal December 2016
Frozen-Density Embedding Strategy for Multilevel Simulations of Electronic Structure journal April 2015
A Simple, Exact Density-Functional-Theory Embedding Scheme journal July 2012
Frozen density functional approach for ab initio calculations of solvated molecules journal July 1993
Density Differences in Embedding Theory with External Orbital Orthogonality journal June 2014
Ab initio phase diagram and nucleation of gallium journal May 2020
NADPH levels affect cellular epigenetic state by inhibiting HDAC3–Ncor complex journal January 2021
Calculation of local excitations in large systems by embedding wave-function theory in density-functional theory journal January 2008
Accurate frozen-density embedding potentials as a first step towards a subsystem description of covalent bonds journal April 2010
Exact nonadditive kinetic potentials for embedded density functional theory journal August 2010
Embedded density functional theory for covalently bonded and strongly interacting subsystems journal April 2011
Communication: Embedded fragment stochastic density functional theory journal July 2014
Orbital-free density functional theory implementation with the projector augmented-wave method journal December 2014
Sublinear scaling for time-dependent stochastic density functional theory journal January 2015
Exact density functional and wave function embedding schemes based on orbital localization journal August 2016
Communication: Density functional theory embedding with the orthogonality constrained basis set expansion procedure journal June 2017
Equilibrium configurations of large nanostructures using the embedded saturated-fragments stochastic density functional theory journal June 2017
Accurate embedding through potential reconstruction: A comparison of different strategies journal August 2018
Overlapped embedded fragment stochastic density functional theory for covalently-bonded materials journal January 2019
Temperature and size dependence for Monte Carlo simulations of TIP4P water journal December 1985
Advanced capabilities for materials modelling with Quantum ESPRESSO journal October 2017
Stochastic density functional theory at finite temperatures journal March 2018
Self-Averaging Stochastic Kohn-Sham Density-Functional Theory journal September 2013
XSEDE: Accelerating Scientific Discovery journal September 2014
Orbital-free density functional theory for materials research journal January 2018
Advanced capabilities for materials modelling with Quantum ESPRESSO text January 2017
Embedded density functional theory for covalently bonded and strongly interacting subsystems text January 2011
Orbital-Free Density Functional Theory Implementation with the Projector Augmented-Wave Method text January 2014
Sublinear scaling for time-dependent stochastic density functional theory text January 2014
Quantum embedding theories text January 2016
Advanced capabilities for materials modelling with Quantum ESPRESSO text January 2017
Density functional embedding for molecular systems text January 2006
QUICKSTEP: Fast and accurate density functional calculations using a mixed Gaussian and plane waves approach text January 2005

Similar Records

Communication: Embedded fragment stochastic density functional theory
Journal Article · Mon Jul 28 00:00:00 EDT 2014 · Journal of Chemical Physics · OSTI ID:22419907

Overlapped embedded fragment stochastic density functional theory for covalently-bonded materials
Journal Article · Thu Jan 17 19:00:00 EST 2019 · Journal of Chemical Physics · OSTI ID:1492332