skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/MRA.01599-19· OSTI ID:1602888
ORCiD logo [1];  [2];  [1];  [3];  [3];  [2]; ORCiD logo [4];  [5];
  1. Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
  2. Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
  3. Department of Energy Joint Genome Institute, Walnut Creek, California, USA
  4. Department of Microbiology and Plant Pathology, University of California, Riverside, Riverside, California, USA, Institute of Integrative Genome Biology, University of California, Riverside, Riverside, California, USA
  5. Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy, Mycological Section, Italian Antarctic National Museum, Genoa, Italy

Antarctic cryptoendolithic communities are microbial ecosystems dwelling inside rocks of the Antarctic desert. We present the first 18 shotgun metagenomes from these communities to further characterize their composition, biodiversity, functionality, and adaptation. Future studies will integrate taxonomic and functional annotations to examine the pathways necessary for life to evolve in the extremes.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; Italian Antarctic National Museum (MNA); Italian National Program for Antarctic Researches (PNRA); National Science Foundation (NSF); National Institutes of Health (NIH)
Grant/Contract Number:
AC02-05CH11231; DBI-1429826; S10-OD016290
OSTI ID:
1602888
Alternate ID(s):
OSTI ID: 1609118
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Vol. 9 Journal Issue: 10; ISSN 2576-098X
Publisher:
SSPA - American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (12)

Sun Exposure Shapes Functional Grouping of Fungi in Cryptoendolithic Antarctic Communities journal June 2018
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4) journal February 2016
Antarctic cryptoendolithic metagenomes dataset January 2020
Endolithic Microorganisms in the Antarctic Cold Desert journal February 1982
IMG/M 4 version of the integrated metagenome comparative analysis system journal October 2013
Effect of environmental parameters on biodiversity of the fungal component in lithic Antarctic communities journal October 2017
metaSPAdes: a new versatile metagenomic assembler journal March 2017
BFC: correcting Illumina sequencing errors journal May 2015
Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes journal June 2018
Endolithic microbial diversity in sandstone and granite from the McMurdo Dry Valleys, Antarctica journal August 2016
Altitude and fungal diversity influence the structure of Antarctic cryptoendolithic Bacteria communities journal July 2019
The latitudinal gradient in rock-inhabiting bacterial community compositions in Victoria Land, Antarctica journal March 2019

Figures / Tables (1)


Similar Records

Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability
Journal Article · Mon May 08 00:00:00 EDT 2023 · Microbiome · OSTI ID:1602888

Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages
Journal Article · Fri Mar 19 00:00:00 EDT 2021 · Microbiome · OSTI ID:1602888

Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
Journal Article · Thu Jun 03 00:00:00 EDT 2021 · Microbiology Resource Announcements · OSTI ID:1602888

Related Subjects