On the Nature of the Primary Light-Induced Events in Bacteriorhodopsin: Ultrafast Spectroscopy of Native and C 13 =C 14 Locked Pigments
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journal
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June 1999 |
The photoisomerization of retinal in bacteriorhodopsin: Experimental evidence for a three-state model
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December 1996 |
Femtosecond Infrared Spectroscopy of Bacteriorhodopsin Chromophore Isomerization
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August 2002 |
Excited-state reaction dynamics of bacteriorhodopsin studied by femtosecond spectroscopy
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February 1988 |
Structure of bacteriorhodopsin at 1.55 Å resolution
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journal
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August 1999 |
Ab Initio Nonadiabatic Quantum Molecular Dynamics
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journal
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February 2018 |
Reconstitution of Purple Membrane Vesicles Catalyzing Light-driven Proton Uptake and Adenosine Triphosphate Formation
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journal
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January 1974 |
Photodynamics of All- trans Retinal Protonated Schiff Base in Bacteriorhodopsin and Methanol Solution
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journal
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August 2011 |
Quantum Chemistry on Graphical Processing Units. 1. Strategies for Two-Electron Integral Evaluation
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January 2008 |
Subpicosecond spectroscopy of bacteriorhodopsin
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June 1978 |
Mechanism of colour discrimination by a bacterial sensory rhodopsin
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December 1984 |
Water Molecules in the Schiff Base Region of Bacteriorhodopsin
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November 2003 |
Intrinsic photoisomerization dynamics of protonated Schiff-base retinal
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March 2019 |
Automatic atom type and bond type perception in molecular mechanical calculations
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October 2006 |
Primary intermediates in the photochemical cycle of bacteriorhodopsin
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journal
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September 1978 |
Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms
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journal
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September 2013 |
Primary events in bacteriorhodopsin probed by subpicosecond spectroscopy
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June 1985 |
Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin
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journal
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July 2019 |
Analytical derivatives of the individual state energies in ensemble density functional theory method. I. General formalism
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journal
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July 2017 |
Photoisomerization Path for a Realistic Retinal Chromophore Model: The Nonatetraeniminium Cation
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February 1998 |
CHARMM-GUI Membrane Builder toward realistic biological membrane simulations
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August 2014 |
Ultrafast energy relaxation in bacteriorhodopsin studied by time-integrated fluorescence
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journal
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January 2002 |
Self-consistent implementation of ensemble density functional theory method for multiple strongly correlated electron pairs
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journal
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December 2016 |
Two possible roles of bacteriorhodopsin; a comparative study of strains of Halobacterium halobium differing in pigmentation
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September 1977 |
Lipid14: The Amber Lipid Force Field
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journal
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January 2014 |
Determination of retinal chromophore structure in bacteriorhodopsin with resonance Raman spectroscopy
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journal
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June 1985 |
The role of intersection topography in bond selectivity of cis-trans photoisomerization
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journal
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February 2002 |
Quantum efficiency of the photochemical cycle of bacteriorhodopsin
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journal
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September 1990 |
Femtosecond spectroscopy of the first events of the photochemical cycle in bacteriorhodopsin
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journal
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May 1985 |
Development and testing of a general amber force field
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journal
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January 2004 |
Molecular Dynamics Simulation of Bacteriorhodopsin's Photoisomerization Using Ab Initio Forces for the Excited Chromophore
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journal
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September 2003 |
The quantum yield of bacteriorhodopsin
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journal
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April 1990 |
Flexible simple point-charge water model with improved liquid-state properties
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journal
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January 2006 |
Complete Identification of C:O Stretching Vibrational Bands of Protonated Aspartic Acid Residues in the Difference Infrared Spectra of M and N Intermediates versus Bacteriorhodopsin
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journal
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March 1994 |
Accurate sampling using Langevin dynamics
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journal
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May 2007 |
Spectral and Kinetic Fluorescence Properties of Native and Nonisomerizing Retinal in Bacteriorhodopsin
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journal
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May 2001 |
MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories
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journal
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October 2015 |
Direct observation of the femtosecond excited-state cis-trans isomerization in bacteriorhodopsin
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journal
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May 1988 |
Low-Temperature Retinal Photoisomerization Dynamics in Bacteriorhodopsin
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journal
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March 1998 |
Conical intersections and double excitations in time-dependent density functional theory
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journal
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March 2006 |
Excited-state dynamics of bacteriorhodopsin probed by broadband femtosecond fluorescence spectroscopy
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journal
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January 2005 |
Aborted double bicycle-pedal isomerization with hydrogen bond breaking is the primary event of bacteriorhodopsin proton pumping
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journal
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November 2010 |
The Complete Active Space Self-Consistent Field Method and its Applications in Electronic Structure Calculations
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book
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January 1987 |
Chemical Dynamics in Proteins: The Photoisomerization of Retinal in Bacteriorhodopsin
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March 1998 |
CHARMM-GUI: A web-based graphical user interface for CHARMM
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journal
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March 2008 |
X-ray Structure of Bacteriorhodopsin at 2.5 Angstroms from Microcrystals Grown in Lipidic Cubic Phases
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September 1997 |
Excited-State Dynamics of a Protonated Retinal Schiff Base in Solution
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journal
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January 1996 |
Proton Transfer in Bacteriorhodopsin: Structure, Excitation, IR Spectra, and Potential Energy Surface Analyses by an ab Initio QM/MM Method
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journal
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November 2000 |
A long-range-corrected density functional that performs well for both ground-state properties and time-dependent density functional theory excitation energies, including charge-transfer excited states
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journal
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February 2009 |
Femtosecond time-resolved fluorescence spectroscopy of bacteriorhodopsin: Direct observation of excited state dynamics in the primary step of the proton pump cycle
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journal
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December 1993 |
Dynamical Correlation Effects on Photoisomerization: Ab Initio Multiple Spawning Dynamics with MS-CASPT2 for a Model trans -Protonated Schiff Base
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November 2015 |
Assessment of approximate computational methods for conical intersections and branching plane vectors in organic molecules
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September 2014 |
Ab Initio Multiple Spawning: Photochemistry from First Principles Quantum Molecular Dynamics
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journal
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June 2000 |
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
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journal
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July 2015 |
Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics
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journal
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August 2009 |
Ultrafast photo-induced reaction dynamics in bacteriorhodopsin and its Trp mutants
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journal
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July 2010 |
Kinetics of the 580-nm ultrafast bacteriorhodopsin transient
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journal
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April 1978 |
Direct QM/MM Excited-State Dynamics of Retinal Protonated Schiff Base in Isolation and Methanol Solution
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journal
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August 2014 |
Direct QM/MM simulation of photoexcitation dynamics in bacteriorhodopsin and halorhodopsin
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journal
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August 2014 |
Demonstration of a sensory rhodopsin in eubacteria: Sensory rhodopsin in eubacteria
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journal
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March 2003 |
Reexamining the Primary Light-Induced Events in Bacteriorhodopsin Using a Synthetic C13C14-Locked Chromophore
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journal
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January 1996 |
Nonadiabatic Photodynamics of Retinal Protonated Schiff Base in Channelrhodopsin 2
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journal
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May 2019 |
Nonadiabatic molecular dynamics: Validation of the multiple spawning method for a multidimensional problem
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journal
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May 1998 |
Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser
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journal
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June 2018 |
Nature of the Surface Crossing Process in Bacteriorhodopsin: Computer Simulations of the Quantum Dynamics of the Primary Photochemical Event
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journal
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October 2001 |
Following Photoinduced Dynamics in Bacteriorhodopsin with 7-fs Impulsive Vibrational Spectroscopy
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journal
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January 2007 |
The Complex Extracellular Domain Regulates the Deprotonation and Reprotonation of the Retinal Schiff Base during the Bacteriorhodopsin Photocycle
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journal
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October 1995 |
Rhodopsin-like Protein from the Purple Membrane of Halobacterium halobium
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journal
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September 1971 |
Theory and Simulation of the Ultrafast Double-Bond Isomerization of Biological Chromophores
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journal
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October 2017 |
Optogenetic Control of Cells and Circuits
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journal
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November 2011 |
Recent Advances and Perspectives on Nonadiabatic Mixed Quantum–Classical Dynamics
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journal
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April 2018 |
Following Evolution of Bacteriorhodopsin in Its Reactive Excited State via Stimulated Emission Pumping
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journal
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July 2002 |
Quantum Chemistry on Graphical Processing Units. 2. Direct Self-Consistent-Field Implementation
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journal
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March 2009 |
Molecular dynamics with electronic transitions
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journal
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July 1990 |
Femtosecond Time-Resolved Stimulated Raman Reveals the Birth of Bacteriorhodopsin’s J and K Intermediates
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journal
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June 2009 |
Real-time spectroscopy of transition states in bacteriorhodopsin during retinal isomerization
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journal
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November 2001 |
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
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journal
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July 2017 |
Shape of Multireference, Equation-of-Motion Coupled-Cluster, and Density Functional Theory Potential Energy Surfaces at a Conical Intersection
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journal
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June 2014 |