Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

The α-synuclein hereditary mutation E46K unlocks a more stable, pathogenic fibril structure

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America
 [1];  [2];  [2];  [2];  [3];  [1];  [1];  [2];  [1]
  1. Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095,, Department of Biological Chemistry, University of California, Los Angeles, CA 90095,, Department of Energy Institute, University of California, Los Angeles, CA 90095,, Molecular Biology Institute, University of California, Los Angeles, CA 90095,, Howard Hughes Medical Institute, University of California, Los Angeles, CA 90095,
  2. Molecular Biology Institute, University of California, Los Angeles, CA 90095,, Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, CA 90095,
  3. California NanoSystems Institute, University of California, Los Angeles, CA 90095

Aggregation of α-synuclein is a defining molecular feature of Parkinson’s disease, Lewy body dementia, and multiple systems atrophy. Hereditary mutations in α-synuclein are linked to both Parkinson’s disease and Lewy body dementia; in particular, patients bearing the E46K disease mutation manifest a clinical picture of parkinsonism and Lewy body dementia, and E46K creates more pathogenic fibrils in vitro. Understanding the effect of these hereditary mutations on α-synuclein fibril structure is fundamental to α-synuclein biology. We therefore determined the cryo-electron microscopy (cryo-EM) structure of α-synuclein fibrils containing the hereditary E46K mutation. The 2.5-Å structure reveals a symmetric double protofilament in which the molecules adopt a vastly rearranged, lower energy fold compared to wild-type fibrils. We propose that the E46K misfolding pathway avoids electrostatic repulsion between K46 and K80, a residue pair which form the E46-K80 salt bridge in the wild-type fibril structure. We hypothesize that, under our conditions, the wild-type fold does not reach this deeper energy well of the E46K fold because the E46-K80 salt bridge diverts α-synuclein into a kinetic trap—a shallower, more accessible energy minimum. The E46K mutation apparently unlocks a more stable and pathogenic fibril structure.

Research Organization:
Univ. of California, Los Angeles, CA (United States)
Sponsoring Organization:
USDOE; USDOE Office of Science (SC)
Grant/Contract Number:
FC02-02ER63421
OSTI ID:
1597118
Alternate ID(s):
OSTI ID: 1799617
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Journal Name: Proceedings of the National Academy of Sciences of the United States of America Journal Issue: 7 Vol. 117; ISSN 0027-8424
Publisher:
Proceedings of the National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
English

References (49)

The new mutation, E46K, of α-synuclein causes parkinson and Lewy body dementia: New α-Synuclein Gene Mutation journal December 2003
Application of a Self-consistent Mean Field Theory to Predict Protein Side-chains Conformation and Estimate Their Conformational Entropy journal June 1994
Neurodegeneration and the ordered assembly of α-synuclein journal November 2017
α-synuclein locus duplication as a cause of familial Parkinson's disease journal September 2004
Causal relation between α-synuclein locus duplication as a cause of familial Parkinson's disease journal September 2004
Filamentous α-synuclein inclusions link multiple system atrophy with Parkinson's disease and dementia with Lewy bodies journal July 1998
Spatiotemporal Proteomic Profiling of Huntington’s Disease Inclusions Reveals Widespread Loss of Protein Function journal November 2017
The alpha-synuclein mutation E46K promotes aggregation in cultured cells journal February 2006
Mutation E46K increases phospholipid binding and assembly into filaments of human α-synuclein journal September 2004
Formation of Amyloids by Aβ-(1–42) on NGF-differentiated PC12 Cells: Roles of Gangliosides and Cholesterol journal August 2007
Structural Insights into α-Synuclein Fibril Polymorphism: Effects of Parkinson's Disease-Related C-Terminal Truncations journal September 2019
EMAN2: An extensible image processing suite for electron microscopy journal January 2007
Automatic estimation and correction of anisotropic magnification distortion in electron microscopes journal November 2015
CTFFIND4: Fast and accurate defocus estimation from electron micrographs journal November 2015
Helical reconstruction in RELION journal June 2017
SerialEM: A Program for Automated Tilt Series Acquisition on Tecnai Microscopes Using Prediction of Specimen Position journal July 2003
N-Terminal Acetylation Affects α-Synuclein Fibril Polymorphism journal August 2019
Quantification of the Thermodynamically Linked Quaternary and Tertiary Structural Stabilities of Transthyretin and Its Disease-Associated Variants: The Relationship between Stability and Amyloidosis journal July 2008
Solvation energy in protein folding and binding journal January 1986
Structure of the toxic core of α-synuclein from invisible crystals journal September 2015
The activities of amyloids from a structural perspective journal November 2016
Cryo-EM structures of tau filaments from Alzheimer’s disease journal July 2017
The many faces of α-synuclein: from structure and toxicity to therapeutic target journal December 2012
Solid-state NMR structure of a pathogenic fibril of full-length human α-synuclein journal March 2016
Amyloid fibril structure of α-synuclein determined by cryo-electron microscopy journal July 2018
Cryo-EM of full-length α-synuclein reveals fibril polymorphs with a common structural kernel journal September 2018
Structure of amyloid-β (20-34) with Alzheimer’s-associated isomerization at Asp23 reveals a distinct protofilament interface journal July 2019
Cellular milieu imparts distinct pathological α-synuclein strains in α-synucleinopathies journal May 2018
Structures of filaments from Pick’s disease reveal a novel tau protein fold journal August 2018
Novel tau filament fold in chronic traumatic encephalopathy encloses hydrophobic molecules journal March 2019
Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation journal May 2018
Cryo-EM structures of four polymorphic TDP-43 amyloid cores journal June 2019
Structures of fibrils formed by α-synuclein hereditary disease mutant H50Q reveal new polymorphs journal November 2019
Structure-neurotoxicity relationships of amyloid  -protein oligomers journal August 2009
Evidence for α-synuclein prions causing multiple system atrophy in humans with parkinsonism journal August 2015
E46K α-synuclein pathological mutation causes cell-autonomous toxicity without altering protein turnover or aggregation journal September 2017
Toward an outline of the topography of a realistic protein-folding funnel. journal April 1995
 -Synuclein in filamentous inclusions of Lewy bodies from Parkinson's disease and dementia with Lewy bodies journal May 1998
Mutant Protein A30P α-Synuclein Adopts Wild-type Fibril Structure, Despite Slower Fibrillation Kinetics journal February 2012
Molecular Structure of Aggregated Amyloid-β: Insights from Solid-State Nuclear Magnetic Resonance journal August 2016
Electrostatic Zipper Motif for DNA Aggregation journal May 1999
Features and development of Coot journal March 2010
Real-space refinement in PHENIX for cryo-EM and crystallography journal May 2018
 -Synuclein Locus Triplication Causes Parkinson's Disease journal October 2003
Principles that Govern the Folding of Protein Chains journal July 1973
Site-Specific Perturbations of Alpha-Synuclein Fibril Structure by the Parkinson's Disease Associated Mutations A53T and E46K journal March 2013
Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6 journal May 2015
Cryo-EM structure of alpha-synuclein fibrils journal July 2018
Two new polymorphic structures of human full-length alpha-synuclein fibrils solved by cryo-electron microscopy journal December 2019

Similar Records

Structures of fibrils formed by α-synuclein hereditary disease mutant H50Q reveal new polymorphs
Journal Article · Tue Nov 05 19:00:00 EST 2019 · Nature Structural & Molecular Biology · OSTI ID:1799613