Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi)

Davis, William J.; Amses, Kevin R.; Benny, Gerald L.; Carter-House, Derreck; Chang, Ying; Grigoriev, Igor; Smith, Matthew E.; Spatafora, Joseph W.; Stajich, Jason E.; James, Timothy Y.

doi:10.1016/j.ympev.2019.01.006

Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi)

Journal Article · Fri Jan 11 00:00:00 EST 2019 · Molecular Phylogenetics and Evolution

DOI:https://doi.org/10.1016/j.ympev.2019.01.006· OSTI ID:1594914

Davis, William J. ^[1]; Amses, Kevin R. ^[1]; Benny, Gerald L. ^[2]; Carter-House, Derreck ^[3]; Chang, Ying ^[4]; Grigoriev, Igor ^[5]; Smith, Matthew E. ^[2]; Spatafora, Joseph W. ^[4]; Stajich, Jason E. ^[3]; James, Timothy Y. ^[1]

Univ. of Michigan, Ann Arbor, MI (United States)
Univ. of Florida, Gainesville, FL (United States)
Univ. of California, Riverside, CA (United States)
Oregon State Univ., Corvallis, OR (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)

Previous genome-scale phylogenetic analyses of Fungi have under sampled taxa from Zoopagales; this order contains many predacious or parasitic genera, and most have never been grown in pure culture. We sequenced the genomes of 4 zoopagalean taxa that are predators of amoebae, nematodes, or rotifers and the genome of one taxon that is a parasite of amoebae using single cell sequencing methods with whole genome amplification. Each genome was a metagenome, which was assembled and binned using multiple techniques to identify the target genomes. We inferred phylogenies with both super matrix and coalescent approaches using 192 conserved proteins mined from the target genomes and performed ancestral state reconstructions to determine the ancestral trophic lifestyle of the clade. Our results indicate that Zoopagales is monophyletic. Ancestral state reconstructions provide moderate support for mycoparasitism being the ancestral state of the clade.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1594914

Journal Information:: Molecular Phylogenetics and Evolution, Journal Name: Molecular Phylogenetics and Evolution Journal Issue: C Vol. 133; ISSN 1055-7903

Publisher:: ElsevierCopyright Statement

Country of Publication:: United States

Language:: English

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