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Mechanism of pathogen-specific TLR4 activation in the mucosa: Fimbriae, recognition receptors and adaptor protein selection
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journal
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February 2006 |
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Necrotizing enterocolitis of the neonate with Clostridium perfringens: diagnosis, clinical course, and role of alpha toxin
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journal
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October 2007 |
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The role of quorum sensing in Escherichia coli (ETEC) virulence factors
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journal
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November 2015 |
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Origins and virulence mechanisms of uropathogenic Escherichia coli
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August 2008 |
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Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants
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June 2016 |
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dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
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July 2017 |
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Measurement of bacterial replication rates in microbial communities
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November 2016 |
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MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
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October 2017 |
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Fast gapped-read alignment with Bowtie 2
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March 2012 |
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Fast and sensitive protein alignment using DIAMOND
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November 2014 |
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Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
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journal
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November 2017 |
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Developmentally regulated I B expression in intestinal epithelium and susceptibility to flagellin-induced inflammation
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journal
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April 2004 |
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Strain-resolved community genomic analysis of gut microbial colonization in a premature infant
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journal
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December 2010 |
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Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
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journal
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October 2006 |
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Search and clustering orders of magnitude faster than BLAST
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journal
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August 2010 |
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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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journal
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April 2012 |
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MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
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journal
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October 2015 |
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FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
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journal
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April 2009 |
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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journal
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January 2013 |
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VFDB: a reference database for bacterial virulence factors
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journal
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December 2004 |
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antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
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journal
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May 2015 |
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The Pfam protein families database in 2019
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journal
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October 2018 |
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Bacterial Quorum Sensing: Its Role in Virulence and Possibilities for Its Control
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journal
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November 2012 |
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Gamma-Butyrolactone Regulatory System of Streptomyces chattanoogensis Links Nutrient Utilization, Metabolism, and Development
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journal
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September 2011 |
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Isolation of a Variant of Subtilosin A with Hemolytic Activity
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journal
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July 2009 |
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Complete Sequencing and Diversity Analysis of the Enterotoxin-Encoding Plasmids in Clostridium perfringens Type A Non-Food-Borne Human Gastrointestinal Disease Isolates
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journal
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February 2006 |
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Evolution of the Chaperone/Usher Assembly Pathway: Fimbrial Classification Goes Greek
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journal
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December 2007 |
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Prodigal: prokaryotic gene recognition and translation initiation site identification
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journal
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March 2010 |
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BIGSdb: Scalable analysis of bacterial genome variation at the population level
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journal
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December 2010 |
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A performance study of the impact of recombination on species tree analysis
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journal
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November 2016 |
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Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms
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journal
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February 2019 |
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Early Intestinal Bacterial Colonization and Necrotizing Enterocolitis in Premature Infants: The Putative Role of Clostridium
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journal
|
September 2004 |
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Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data
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journal
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August 2014 |
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Factors Influencing the Composition of the Intestinal Microbiota in Early Infancy
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journal
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August 2006 |
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Redefining the Role of Intestinal Microbes in the Pathogenesis of Necrotizing Enterocolitis
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journal
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March 2010 |
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A Critical Role for TLR4 in the Pathogenesis of Necrotizing Enterocolitis by Modulating Intestinal Injury and Repair
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journal
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September 2007 |
|
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development
|
journal
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March 2015 |
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VirSorter: mining viral signal from microbial genomic data
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journal
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January 2015 |
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Diversity and composition of the North Sikkim hot spring mycobiome using a culture-independent method
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journal
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March 2021 |
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Pathology of neonatal necrotizing enterocolitis: A ten-year experience
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journal
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July 1990 |
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Pathogenesis of Neonatal Necrotising Enterocolitis
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journal
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January 1982 |
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Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants
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journal
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March 2016 |
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Identification of a Botulinum Neurotoxin-like Toxin in a Commensal Strain of Enterococcus faecium
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journal
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February 2018 |
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Pathogenesis of Neonatal Necrotising Enterocolitis
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journal
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February 1982 |
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Binning metagenomic contigs by coverage and composition
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journal
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September 2014 |
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Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
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journal
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March 2021 |
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Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
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journal
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May 2018 |
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Metagenomic engineering of the mammalian gut microbiome in situ
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journal
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January 2019 |
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Environmental dissemination of pathogenic Listeria monocytogenes in flowing surface waters in Switzerland
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journal
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April 2021 |
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Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature
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journal
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January 2013 |
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Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature
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journal
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January 2013 |
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Necrotizing Enterocolitis
|
journal
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January 2011 |
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Necrotizing Enterocolitis
|
journal
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December 2020 |
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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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journal
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November 2014 |
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The histone deacetylase inhibitor trichostatin A alters the pattern of DNA replication origin activity in human cells
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journal
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January 2005 |
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The histone deacetylase inhibitor trichostatin A alters the pattern of DNA replication origin activity in human cells
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journal
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January 2005 |
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Functional interactions of archaea, bacteria and viruses in a hypersaline endolithic community: Halite metagenome
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journal
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March 2016 |
|
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples
|
journal
|
July 2015 |
|
Antibiotics, birth mode, and diet shape microbiome maturation during early life
|
journal
|
June 2016 |
|
Gamma-Butyrolactone Regulatory System of Streptomyces chattanoogensis Links Nutrient Utilization, Metabolism, and Development
|
journal
|
September 2011 |
|
Isolation of a Variant of Subtilosin A with Hemolytic Activity
|
journal
|
July 2009 |
|
Complete Sequencing and Diversity Analysis of the Enterotoxin-Encoding Plasmids in Clostridium perfringens Type A Non-Food-Borne Human Gastrointestinal Disease Isolates
|
journal
|
February 2006 |
|
Evolution of the Chaperone/Usher Assembly Pathway: Fimbrial Classification Goes Greek
|
journal
|
December 2007 |
|
Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome
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journal
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January 2018 |
|
Necrotizing Enterocolitis
|
journal
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February 2009 |
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Necrotizing Enterocolitis – 150 Years of Fruitless Search for the Cause
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journal
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January 2009 |
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Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants
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journal
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April 2013 |
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ViromeScan: a new tool for metagenomic viral community profiling
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journal
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March 2016 |
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Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis
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journal
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March 2017 |
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VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
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journal
|
July 2017 |
|
Polinton-like viruses are abundant in aquatic ecosystems
|
journal
|
January 2021 |
|
Early Intestinal Bacterial Colonization and Necrotizing Enterocolitis in Premature Infants: The Putative Role of Clostridium
|
journal
|
September 2004 |
|
New Insights Into the Pathogenesis and Treatment of Necrotizing Enterocolitis: Toll-Like Receptors and Beyond
|
journal
|
March 2011 |
|
The Roles of Bacteria and TLR4 in Rat and Murine Models of Necrotizing Enterocolitis
|
journal
|
August 2006 |
|
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development
|
journal
|
March 2015 |