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Modeling Host-Pathogen Interactions in the Context of the Microenvironment: Three-Dimensional Cell Culture Comes of Age

Journal Article · · Infection and Immunity
DOI:https://doi.org/10.1128/IAI.00282-18· OSTI ID:1580337
Tissues and organs provide the structural and biochemical landscapes upon which microbial pathogens and commensals function to regulate health and disease. While flat two-dimensional (2-D) monolayers composed of a single cell type have provided important insight into understanding host-pathogen interactions and infectious disease mechanisms, these reductionist models lack many essential features present in the native host microenvironment that are known to regulate infection, including three-dimensional (3-D) architecture, multicellular complexity, commensal microbiota, gas exchange and nutrient gradients, and physiologically relevant biomechanical forces (e.g., fluid shear, stretch, compression). Here, a major challenge in tissue engineering for infectious disease research is recreating this dynamic 3-D microenvironment (biological, chemical, and physical/mechanical) to more accurately model the initiation and progression of host-pathogen interactions in the laboratory. Here we review selected 3-D models of human intestinal mucosa, which represent a major portal of entry for infectious pathogens and an important niche for commensal microbiota. We highlight seminal studies that have used these models to interrogate host-pathogen interactions and infectious disease mechanisms, and we present this literature in the appropriate historical context. Models discussed include 3-D organotypic cultures engineered in the rotating wall vessel (RWV) bioreactor, extracellular matrix (ECM)-embedded/organoid models, and organ-on-a-chip (OAC) models. Collectively, these technologies provide a more physiologically relevant and predictive framework for investigating infectious disease mechanisms and antimicrobial therapies at the intersection of the host, microbe, and their local microenvironments.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1580337
Journal Information:
Infection and Immunity, Journal Name: Infection and Immunity Journal Issue: 11 Vol. 86; ISSN 0019-9567
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

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Mechanobiology and Developmental Control journal October 2013
Engineered In Vitro Disease Models journal January 2015
Microengineering of Cellular Interactions journal August 2000
Soft Lithography in Biology and Biochemistry journal August 2001
Of Extracellular Matrix, Scaffolds, and Signaling: Tissue Architecture Regulates Development, Homeostasis, and Cancer journal November 2006
Human Clostridium difficile infection: inhibition of NHE3 and microbiota profile journal March 2015
Human Clostridium difficile infection: altered mucus production and composition journal March 2015
A nomenclature for intestinal in vitro cultures journal June 2012
Tissue engineering of functional cardiac muscle: molecular, structural, and electrophysiological studies journal January 2001
Shear stress-mediated NO production in inner medullary collecting duct cells journal August 2000
A hydrodynamic mechanosensory hypothesis for brush border microvilli journal October 2000
The Impact of Simulated and Real Microgravity on Bone Cells and Mesenchymal Stem Cells journal January 2014
Paradigms for Mechanical Signal Transduction in the Intestinal Epithelium journal January 2003
Mechanical Control of Tissue Morphogenesis journal August 2008
Receptors in the Pseudomonas Aeruginosa Adherence to Injured and Repairing Airway Epithelium journal October 1996
Innate Immunity in the Respiratory Epithelium journal August 2011
Mechanical stimulation activates Gαq signaling pathways and 5-hydroxytryptamine release from human carcinoid BON cells journal October 2001
Human iPS cell–derived alveolar epithelium repopulates lung extracellular matrix journal October 2013
Human enteroids as an ex-vivo model of host–pathogen interactions in the gastrointestinal tract journal April 2014
The relevance and potential roles of microphysiological systems in biology and medicine journal September 2014
TEER Measurement Techniques for In Vitro Barrier Model Systems journal April 2015
Innate immunity in the lung: how epithelial cells fight against respiratory pathogens journal February 2004
Zonation related function and ubiquitination regulation in human hepatocellular carcinoma cells in dynamic vs. static culture conditions journal January 2012
Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment journal January 2007
Three-dimensional Huh7 cell culture system for the study of Hepatitis C virus infection journal January 2009
Crosstalk between H9N2 avian influenza virus and crypt-derived intestinal organoids journal November 2017
Generation of tissue-engineered small intestine using embryonic stem cell-derived human intestinal organoids journal October 2015
Artificial three-dimensional niches deconstruct pancreas development in vitro journal October 2013
Helicobacter pylori -induced gastric pathology: insights from in vivo and ex vivo models journal February 2017
Intestinal epithelial cell polarity defects in disease: lessons from microvillus inclusion disease journal February 2018
Tensegrity I. Cell structure and hierarchical systems biology journal April 2003
Tensegrity II. How structural networks influence cellular information processing networks journal April 2003
Modeling tissue-specific signaling and organ function in three dimensions journal June 2003
The extracellular matrix at a glance journal December 2010
Signalling at tight junctions during epithelial differentiation and microbial pathogenesis journal August 2014
Deep nuclear invaginations are linked to cytoskeletal filaments – integrated bioimaging of epithelial cells in 3D culture journal August 2016
Goodbye flat biology – time for the 3rd and the 4th dimensions journal January 2017
Vascular Mechanobiology journal January 2009
Microgravity Culture Reduces Apoptosis and Increases the Differentiation of a Human Colorectal Carcinoma cell line journal January 2000
The Bacterial Fimbrial Tip Acts as a Mechanical Force Sensor journal May 2011
Analysis of Interactions of Salmonella Type Three Secretion Mutants with 3-D Intestinal Epithelial Cells journal December 2010
NASA-Approved Rotary Bioreactor Enhances Proliferation of Human Epidermal Stem Cells and Supports Formation of 3D Epidermis-Like Structure journal November 2011
Glycerol Supplementation Enhances L. reuteri’s Protective Effect against S. Typhimurium Colonization in a 3-D Model of Colonic Epithelium journal May 2012
Chip-Based Comparison of the Osteogenesis of Human Bone Marrow- and Adipose Tissue-Derived Mesenchymal Stem Cells under Mechanical Stimulation journal September 2012
Ricin Crosses Polarized Human Intestinal Cells and Intestines of Ricin-Gavaged Mice without Evident Damage and Then Disseminates to Mouse Kidneys journal July 2013
Probing Functional Properties of Nociceptive Axons Using a Microfluidic Culture System journal November 2013
Recellularization of Decellularized Lung Scaffolds Is Enhanced by Dynamic Suspension Culture journal May 2015
The Viral Mimetic Polyinosinic:Polycytidylic Acid Alters the Growth Characteristics of Small Intestinal and Colonic Crypt Cultures journal September 2015
Human Gut-On-A-Chip Supports Polarized Infection of Coxsackie B1 Virus In Vitro journal February 2017
Intestinal organoids model human responses to infection by commensal and Shiga toxin producing Escherichia coli journal June 2017
Flow velocity-driven differentiation of human mesenchymal stromal cells in silk fibroin scaffolds: A combined experimental and computational approach journal July 2017
CD44 Plays a Functional Role in Helicobacter pylori-induced Epithelial Cell Proliferation journal February 2015
Influenza Virus Infects Epithelial Stem/Progenitor Cells of the Distal Lung: Impact on Fgfr2b-Driven Epithelial Repair journal June 2016
Salmonella -infected crypt-derived intestinal organoid culture system for host-bacterial interactions journal September 2014
A Human Breathing Lung-on-a-Chip journal March 2015
The Viral Mimetic Polyinosinic:Polycytidylic Acid Alters the Growth Characteristics of Small Intestinal and Colonic Crypt Cultures
  • J., von Furstenberg, Richard; T., Abreu, Maria; J., Henning, Susan
  • The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/jc4x-f373
text January 2015
The coxsackievirus and adenovirus receptor is a transmembrane component of the tight junction text January 2001
Role of mechanical stress in regulating airway surface hydration and mucus clearance rates text January 2008
Characterization of microfluidic human epidermal keratinocyte culture
  • T., O’Neill, Adrian; A., Monteiro-Riviere, Nancy; M., Walker, Glenn
  • The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/yj6a-4a87
text January 2008
Lung Organoids and Their Use To Study Cell-Cell Interaction text January 2017
Ex vivo 2D and 3D HSV-2 infection model using human normal vaginal epithelial cells journal January 2017
A Microscale In Vitro Physiological Model of the Liver: Predictive Screens for Drug Metabolism and Enzyme Induction journal December 2005
Matrix Mechanics and Fluid Shear Stress Control Stem Cells Fate in Three Dimensional Microenvironment journal May 2013
Low-Shear Modeled Microgravity Enhances Salmonella Enterica Resis-tance to Hydrogen Peroxide Through a Mechanism Involving KatG and KatN journal July 2012
Conservation of the Low-shear Modeled Microgravity Response in Enterobacteriaceae and Analysis of the trp Genes in this Response journal June 2014
Rotating-Wall Vessel Coculture of Small Intestine as a Prelude to Tissue Modeling: Aspects of Simulated Microgravity journal February 1993
In Vitro Cell Culture Infectivity Assay for Human Noroviruses journal March 2007
Cell Polarization and Epigenetic Status Shape the Heterogeneous Response to Type III Interferons in Intestinal Epithelial Cells journal June 2017
Subversion of Mucosal Barrier Polarity by Pseudomonas Aeruginosa journal January 2011
3D Printing of Organs-On-Chips journal January 2017
Secretory IgA is Concentrated in the Outer Layer of Colonic Mucus along with Gut Bacteria journal April 2014
The Actin Cytoskeleton as a Barrier to Virus Infection of Polarized Epithelial Cells journal December 2011
In Search of the Pivot Point of Mechanotransduction: Mechanosensing of Stem Cells journal January 2014
Development of a Multicellular Three-dimensional Organotypic Model of the Human Intestinal Mucosa Grown Under Microgravity journal January 2016
The outer mucus layer hosts a distinct intestinal microbial niche text January 2015
Flow velocity-driven differentiation of human mesenchymal stromal cells in silk fibroin scaffolds: A combined experimental and computational approach text January 2017
The Salmonella Pathogenicity Island (SPI)-2 and SPI-1 Type III Secretion Systems Allow Salmonella Serovar typhimurium to Trigger Colitis via MyD88-Dependent and MyD88-Independent Mechanisms journal January 2005
Peyer's Patches: The Immune Sensors of the Intestine journal January 2010
Laminin regulates PI3K basal localization and activation to sustain STAT5 activation journal November 2010
In vitro generation of human pluripotent stem cell derived lung organoids journal March 2015
The outer mucus layer hosts a distinct intestinal microbial niche text January 2015
Patterning Osteogenesis by Inducible Gene Expression in Microfluidic Culture Systems text January 2011

Cited By (8)

3D Primary Hepatocyte Culture Systems for Analyses of Liver Diseases, Drug Metabolism, and Toxicity: Emerging Culture Paradigms and Applications journal May 2019
Organoids in immunological research journal December 2019
Infection-induced signals generated at the plasma membrane epigenetically regulate Wnt signaling in vitro and in vivo journal December 2019
Extracellular matrix dynamics in cell migration, invasion and tissue morphogenesis journal June 2019
An Advanced Human Intestinal Coculture Model Reveals Compartmentalized Host and Pathogen Strategies during Salmonella Infection journal February 2020
Host metabolites stimulate the bacterial proton motive force to enhance the activity of aminoglycoside antibiotics journal April 2019
From Entry to Early Dissemination—Toxoplasma gondii's Initial Encounter With Its Host journal March 2019
Three Dimensional Vero Cell-Platform for Rapid and Sensitive Screening of Shiga-Toxin Producing Escherichia coli journal May 2019

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