skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Accumulated mutations by 6 months of infection collectively render transmitted/founder HIV-1 significantly less fit

Journal Article · · Journal of Infection
 [1];  [2];  [1];  [3];  [3];  [4];  [4];  [4];  [5];  [5]; ORCiD logo [6]; ORCiD logo [6];  [1]
  1. Jilin Univ., Jilin Province (China); Duke Univ. Medical Center, Durham, NC (United States)
  2. Jilin Univ., Jilin Province (China); Duke Univ. Medical Center, Durham, NC (United States); National Inst. for Food and Drug Control, Beijing (China)
  3. Duke Univ. Medical Center, Durham, NC (United States)
  4. Univ. of Alabama at Birmingham, Birmingham, AL (United States)
  5. Jilin Univ., Jilin Province (China)
  6. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

Viral fitness plays an important role in HIV-1 evolution, transmission and pathogenesis. However, how mutations accumulated during early infection affect viral fitness has not been well studied. We generated paired infectious molecular clones (IMCs) for transmitted/founder (T/F) and 6-month (6-mo) viruses post infection from 10 infected individuals to investigate the impact of accumulated mutations on viral fitness by comparing 6-mo viruses to their cognate T/F viruses. We found that all ten 6-mo viruses were less fit than their cognate T/F viruses. Moreover, the fitness losses of the 6-mo viruses correlated with the decrease in viral loads from the peak of viremia. Furthermore, these results show that the mutations accumulated during half a year post infection collectively reduce viral fitness and thereby contribute to lowering viral loads.

Research Organization:
Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
National Institutes of Health (NIH); USDOE
Grant/Contract Number:
89233218CNA000001; R01AI087520; R01AI028433; R01OD011095; AI067854; AI100645; 31670162; 2018ZX10731101-001-010; 2017TD-05; BX20180124; 2018M641786
OSTI ID:
1579704
Report Number(s):
LA-UR-19-30331
Journal Information:
Journal of Infection, Vol. 80, Issue 2; ISSN 0163-4453
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 2 works
Citation information provided by
Web of Science

References (55)

Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients journal April 2008
Relationship between In Vitro Human Immunodeficiency Virus Type 1 Replication Rate and Virus Load in Plasma journal November 2003
The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection journal June 2009
Transmission of HIV-1 CTL Escape Variants Provides HLA-Mismatched Recipients with a Survival Advantage journal March 2008
Fitness Cost of Escape Mutations in p24 Gag in Association with Control of Human Immunodeficiency Virus Type 1 journal March 2006
HLA-B*57 Micropolymorphism Shapes HLA Allele-Specific Epitope Immunogenicity, Selection Pressure, and HIV Immune Control journal November 2011
HumanImmunodeficiency Virus Type 1 Fitness Is a Determining Factor in ViralRebound and Set Point in ChronicInfection journal December 2003
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice journal January 1994
Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/founder genome journal January 2012
Detection of minor drug-resistant populations by parallel allele-specific sequencing journal January 2007
Reversion and T Cell Escape Mutations Compensate the Fitness Loss of a CD8+ T Cell Escape Mutant in Their Cognate Transmitted/Founder Virus journal July 2014
Role of CD8 + T Cells in the Selection of HIV-1 Immune Escape Mutations journal January 2017
A strongly selected mutation in the HIV-1 genome is independent of T cell responses and neutralizing antibodies journal October 2017
Early Low-Titer Neutralizing Antibodies Impede HIV-1 Replication and Select for Virus Escape journal May 2012
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection journal June 2009
Changes in Human Immunodeficiency Virus Type 1 Fitness and Genetic Diversity during Disease Progression journal June 2005
Escape from the Dominant HLA-B27-Restricted Cytotoxic T-Lymphocyte Response in Gag Is Associated with a Dramatic Reduction in Human Immunodeficiency Virus Type 1 Replication journal September 2007
Preexisting compensatory amino acids compromise fitness costs of a HIV-1 T cell escape mutation journal November 2014
Assessing Predicted HIV-1 Replicative Capacity in a Clinical Setting journal November 2011
Virulence and Pathogenesis of HIV-1 Infection: An Evolutionary Perspective journal March 2014
Transmitted/Founder and Chronic Subtype C HIV-1 Use CD4 and CCR5 Receptors with Equal Efficiency and Are Not Inhibited by Blocking the Integrin α4β7 journal May 2012
Primary Infection by a Human Immunodeficiency Virus with Atypical Coreceptor Tropism journal August 2011
Reduced Viral Replication Capacity of Human Immunodeficiency Virus Type 1 Subtype C Caused by Cytotoxic-T-Lymphocyte Escape Mutations in HLA-B57 Epitopes of Capsid Protein journal December 2008
Evolution of HLA-B*5703 HIV-1 escape mutations in HLA-B*5703–positive individuals and their transmission recipients journal March 2009
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection journal May 2008
Quantitating the Multiplicity of Infection with Human Immunodeficiency Virus Type 1 Subtype C Reveals a Non-Poisson Distribution of Transmitted Variants journal February 2009
Temporal association of cellular immune responses with the initial control of viremia in primary human immunodeficiency virus type 1 syndrome. journal January 1994
High Viral Fitness during Acute HIV-1 Infection journal September 2010
Central Role of Reverting Mutations in HLA Associations with Human Immunodeficiency Virus Set Point journal July 2008
Fitness Costs and Diversity of the Cytotoxic T Lymphocyte (CTL) Response Determine the Rate of CTL Escape during Acute and Chronic Phases of HIV Infection journal August 2011
Acute HIV-1 Infection journal May 2011
Transmission of Multiple HIV-1 Subtype C Transmitted/founder Viruses into the Same Recipients Was not Determined by Modest Phenotypic Differences journal December 2016
Accumulation of Pol Mutations Selected by HLA-B*52:01-C*12:02 Protective Haplotype-Restricted Cytotoxic T Lymphocytes Causes Low Plasma Viral Load Due to Low Viral Fitness of Mutant Viruses journal November 2016
Compensatory Mutation Partially Restores Fitness and Delays Reversion of Escape Mutation within the Immunodominant HLA-B*5703-Restricted Gag Epitope in Chronic Human Immunodeficiency Virus Type 1 Infection journal May 2007
Control of Viremia in Simian Immunodeficiency Virus Infection by CD8+ Lymphocytes journal February 1999
Replicative fitness of transmitted HIV-1 drives acute immune activation, proviral load in memory CD4 + T cells, and disease progression journal February 2015
Cooperation of B Cell Lineages in Induction of HIV-1-Broadly Neutralizing Antibodies journal July 2014
Viral Replication Capacity as a Correlate of HLA B57/B5801-Associated Nonprogressive HIV-1 Infection journal August 2007
Modeling and Estimation of Replication Fitness of Human Immunodeficiency Virus Type 1 In Vitro Experiments by Using a Growth Competition Assay journal March 2006
The impact of HIV-1 within-host evolution on transmission dynamics journal February 2018
Impaired human immunodeficiency virus type 1 replicative fitness in atypical viremic non-progressor individuals journal March 2017
Fitness Disadvantage of Transitional Intermediates Contributes to Dynamic Change in the Infecting-Virus Population during Coreceptor Switch in R5 Simian/Human Immunodeficiency Virus-Infected Macaques journal October 2010
Antiviral pressure exerted by HIV-l-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus journal February 1997
HLA-B57/B*5801 Human Immunodeficiency Virus Type 1 Elite Controllers Select for Rare Gag Variants Associated with Reduced Viral Replication Capacity and Strong Cytotoxic T-Lymphotye Recognition journal December 2008
Phenotypic properties of transmitted founder HIV-1 journal March 2013
Estimating Relative Fitness in Viral Competition Experiments journal December 2000
The Fitness Cost of Mutations Associated with Human Immunodeficiency Virus Type 1 Drug Resistance Is Modulated by Mutational Interactions journal December 2006
In Vitro Replication Kinetics of Human Immunodeficiency Virus Type 1 (HIV‐1) Variants in Relation to Virus Load in Long‐Term Survivors of HIV‐1 Infection journal March 1998
Transmitted Virus Fitness and Host T Cell Responses Collectively Define Divergent Infection Outcomes in Two HIV-1 Recipients journal January 2015
Variable Fitness Impact of HIV-1 Escape Mutations to Cytotoxic T Lymphocyte (CTL) Response journal April 2009
Consequences of HLA-B*13-Associated Escape Mutations on HIV-1 Replication and Nef Function journal September 2015
Role of Transmitted Gag CTL Polymorphisms in Defining Replicative Capacity and Early HIV-1 Pathogenesis journal November 2012
Escape and Compensation from Early HLA-B57-Mediated Cytotoxic T-Lymphocyte Pressure on Human Immunodeficiency Virus Type 1 Gag Alter Capsid Interactions with Cyclophilin A journal August 2007
A Dual Infection/Competition Assay Shows a Correlation between Ex Vivo Human Immunodeficiency Virus Type 1 Fitness and Disease Progression journal October 2000
Relative resistance of HIV-1 founder viruses to control by interferon-alpha journal January 2013