Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Computational Reproducibility of Scientific Workflows at Extreme Scales

Journal Article · · International Journal of High Performance Computing Applications
We propose an approach for improved reproducibility that includes capturing and relating provenance characteristics and performance metrics, in a hybrid queriable system, the ProvEn server. The system capabilities are illustrated on two use cases: scientific reproducibility of results in the ACME climate simulations and performance reproducibility in molecular dynamics workflows on HPC computing platforms.
Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE
DOE Contract Number:
AC05-76RL01830
OSTI ID:
1577046
Report Number(s):
PNNL-SA-137882
Journal Information:
International Journal of High Performance Computing Applications, Journal Name: International Journal of High Performance Computing Applications Journal Issue: 5 Vol. 33
Country of Publication:
United States
Language:
English

References (29)

The Earth System Grid Federation: An open infrastructure for access to distributed geospatial data journal July 2014
Enhancing reproducibility for computational methods journal December 2016
Data provenance hybridization supporting extreme-scale scientific workflow applications conference August 2016
R3: repeatability, reproducibility and rigor journal March 2012
Ten Simple Rules for Reproducible Computational Research journal October 2013
Numerical Reproducibility and Accuracy at ExaScale conference April 2013
High Performance MPI Library for Container-Based HPC Cloud on InfiniBand Clusters conference August 2016
Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks: HELLO ADIOS journal August 2013
Fast Parallel Algorithms for Short-Range Molecular Dynamics journal March 1995
Capturing provenance as a diagnostic tool for workflow performance evaluation and optimization conference August 2017
Performance Visualization for TAU Instrumented Scientific Workflows [Performance Visualization for TAU Instrumented Scientific Workflows]
  • Xie, Cong; Xu, Wei; Ha, Sungsoo
  • International Conference on Information Visualization Theory and Applications, Proceedings of the 13th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications https://doi.org/10.5220/0006646803330340
conference January 2018
An introduction to Docker for reproducible research journal January 2015
Prescriptive provenance for streaming analysis of workflows at scale conference August 2018
Towards trustworthy testbeds thanks to throughout testing
  • Nussbaum, Lucas
  • 2017 IEEE International Parallel and Distributed Processing Symposium: Workshops (IPDPSW), 2017 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) https://doi.org/10.1109/IPDPSW.2017.101
conference May 2017
Testbeds Support for Reproducible Research conference January 2017
Toward the Geoscience Paper of the Future: Best practices for documenting and sharing research from data to software to provenance journal October 2016
A web interface for XALT log data analysis conference January 2016
Streaming spectral clustering conference May 2016
User Environment Tracking and Problem Detection with XALT conference November 2014
Guidelines for evaluating and expressing the uncertainty of NIST measurement results report January 1994
Data storage and sharing for the long tail of science conference August 2016
Packing experiments for sharing and publication conference January 2013
Leveraging large sensor streams for robust cloud control conference December 2016
The Spack package manager: bringing order to HPC software chaos
  • Gamblin, Todd; LeGendre, Matthew; Collette, Michael R.
  • Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis on - SC '15 https://doi.org/10.1145/2807591.2807623
conference January 2015
Reproducible Research in Computational Science journal December 2011
Provenance: An Introduction to PROV journal September 2013
Extreme Heterogeneity 2018 - Productive Computational Science in the Era of Extreme Heterogeneity: Report for DOE ASCR Workshop on Extreme Heterogeneity report December 2018
Numerical reproducibility for the parallel reduction on multi- and many-core architectures journal November 2015
Automated Capture of Experiment Context for Easier Reproducibility in Computational Research journal July 2012

Similar Records

Computational reproducibility of scientific workflows at extreme scales
Journal Article · Mon Apr 08 00:00:00 EDT 2019 · International Journal of High Performance Computing Applications · OSTI ID:1542776

Data Provenance Hybridization Supporting Extreme-Scale Scientific WorkflowApplications
Conference · Sun Nov 20 23:00:00 EST 2016 · OSTI ID:1344661

Enabling HPC Scientific Workflows for Serverless
Conference · Fri Nov 01 00:00:00 EDT 2024 · OSTI ID:2538241