skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Constraining Carbon and Nutrient Flows in Soil With Ecological Stoichiometry

Journal Article · · Frontiers in Ecology and Evolution
 [1];  [2]; ORCiD logo [3];  [4];  [5]
  1. Yale Univ., New Haven, CT (United States). Yale School of Forestry & Environmental Studies
  2. Univ. of Montana, Missoula, MT (United States). Dept. of Ecosystem and Conservation Sciences, W.A. Franke College of Forestry & Conservation
  3. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division and Climate Change Science Inst.
  4. Stanford Univ., CA (United States). Dept. of Biology, School of Humanities and Sciences
  5. Amherst; Univ. of Massachusetts, Amherst, MA (United States). Stockbridge School of Agriculture; Minnesota State Univ., Mankato, MN (United States). Dept. of Ecology, Evolution and Behavior

Soil organic matter (SOM) is central to soil carbon (C) storage and terrestrial nutrient cycling. New data have upended the traditional model of stabilization, which held that stable SOM was mostly made of undecomposed plant molecules. We now know that microbial by-products and dead cells comprise unexpectedly large amounts of stable SOM because they can become attached to mineral surfaces or physically protected within soil aggregates. SOM models have been built to incorporate the microbial to mineral stabilization of organic matter, but now face a new challenge of accurately capturing microbial productivity and metabolism. Explicitly representing stoichiometry, the relative nutrient requirements for growth and maintenance of organisms, could provide a way forward. Stoichiometry limits SOM formation and turnover in nature, but important nutrients like nitrogen (N), phosphorus (P), and sulfur (S) are often missing from the new generation of SOM models. In this synthesis, we seek to facilitate the addition of these nutrients to SOM models by (1) reviewing the stoichiometric bias—the tendency to favor one element over another—of four key processes in the new framework of SOM cycling and (2) applying this knowledge to build a stoichiometrically explicit budget of C, N, P, and S flow through the major SOM pools. By quantifying the role of stoichiometry in SOM cycling, we discover that constraining the C:N:P:S ratio of microorganisms and SOM to specific values reduces uncertainty in C and nutrient flow as effectively as using microbial C use efficiency (CUE) parameters. We find that the value of additional constraints on stoichiometry vs. CUE varies across ecosystems, depending on how precise the available data are for that ecosystem and which biogeochemical pathways are present. Moreover, because CUE summarizes many different processes, stoichiometric measurements of key soil pools are likely to be more robust when extrapolated from soil incubations to plot or biome scale estimates. Our results suggest that measuring SOM stoichiometry should be a priority for future empirical work and that the inclusion of new nutrients in SOM models may be an effective way to improve precision.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1570115
Journal Information:
Frontiers in Ecology and Evolution, Vol. 7; ISSN 2296-701X
Publisher:
Frontiers Research FoundationCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 27 works
Citation information provided by
Web of Science

References (144)

Multiple models and experiments underscore large uncertainty in soil carbon dynamics journal October 2018
An investigation of the distribution of phosphorus between free and mineral associated soil organic matter, using density fractionation journal November 2017
Mineral protection of soil carbon counteracted by root exudates journal March 2015
Similar below-ground carbon cycling dynamics but contrasting modes of nitrogen cycling between arbuscular mycorrhizal and ectomycorrhizal forests journal September 2016
Priming effects: Interactions between living and dead organic matter journal September 2010
Microbial contribution to SOM quantity and quality in density fractions of temperate arable soils journal February 2015
Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest journal March 2013
Cycling downwards – dissolved organic matter in soils journal September 2012
Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: insights from meta-analysis and theoretical models journal May 2013
Analysis of Factors Controlling Soil Organic Matter Levels in Great Plains Grasslands1 journal January 1987
Environmental and stoichiometric controls on microbial carbon-use efficiency in soils: Research review journal July 2012
Stoichiometry of microbial carbon use efficiency in soils journal May 2016
Climate masks decomposer influence in a cross-site litter decomposition study journal April 2017
Flexible Carbon-Use Efficiency across Litter Types and during Decomposition Partly Compensates Nutrient Imbalances—Results from Analytical Stoichiometric Models journal April 2017
Comparing models of microbial–substrate interactions and their response to warming journal January 2016
Review of mechanisms and quantification of priming effects journal October 2000
Dynamics of Carbon and Nitrogen in the Organic Matter of the Soil: A Generic Theory journal July 1991
Minerals in the rhizosphere: overlooked mediators of soil nitrogen availability to plants and microbes journal June 2018
Organic nutrient uptake by mycorrhizal fungi enhances ecosystem carbon storage: a model-based assessment: Organic nutrient uptake enhances soil C journal March 2011
Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA journal April 2018
Facilitation and predation structure a grassland detrital food web: the responses of soil nematodes to isopod processing of litter journal May 2011
Photodegradation alleviates the lignin bottleneck for carbon turnover in terrestrial ecosystems journal April 2016
Carbon cycling traits of plant species are linked with mycorrhizal strategy journal December 2001
Warming rate drives microbial nutrient demand and enzyme expression during peat decomposition journal February 2019
Principles of Terrestrial Ecosystem Ecology book September 2011
An Absorbing Markov Chain approach to understanding the microbial role in soil carbon stabilization journal September 2010
Beyond clay: towards an improved set of variables for predicting soil organic matter content journal February 2018
Resource‐ratio theory predicts mycorrhizal control of litter decomposition journal May 2019
Pathways of mineral‐associated soil organic matter formation: Integrating the role of plant carbon source, chemistry, and point of entry journal November 2018
Litter decomposition: what controls it and how can we alter it to sequester more carbon in forest soils? journal April 2010
Scaling of C:N:P Stoichiometry in Forests Worldwide: Implications of Terrestrial Redfield-Type Ratios journal September 2004
Decomposition and biomass incorporation of 14c-labeled glucose and phenolics in taiga forest floor: effect of substrate quality, successional state, and season journal October 1993
Direct contribution by soil arthropods to nutrient availability through body and faecal nutrient content journal October 1992
Toward a Complete soil c and n Cycle: Incorporating the soil Fauna journal July 2007
Stabilization mechanisms of soil organic matter: Implications for C-saturation of soils journal January 2002
Microbe-driven turnover offsets mineral-mediated storage of soil carbon under elevated CO2 journal November 2014
Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage journal January 2014
The Role of Photodegradation in Surface Litter Decomposition Across a Grassland Ecosystem Precipitation Gradient journal July 2010
Author Correction: Developing a molecular picture of soil organic matter–mineral interactions by quantifying organo–mineral binding journal December 2017
Carbon use efficiency of microbial communities: stoichiometry, methodology and modelling journal April 2013
Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling journal April 2014
A genomic perspective on stoichiometric regulation of soil carbon cycling journal July 2017
Roles of Arbuscular Mycorrhizas in Plant Nutrition and Growth: New Paradigms from Cellular to Ecosystem Scales journal June 2011
Storage and stability of organic carbon in soils as related to depth, occlusion within aggregates, and attachment to minerals journal January 2013
The soil food web: structure and perspectives journal February 2002
Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems journal January 2006
Soil carbon and nitrogen mineralization: Theory and models across scales journal July 2009
Sulfur Transfer through an Arbuscular Mycorrhiza journal October 2008
Sensitivity of global soil carbon stocks to combined nutrient enrichment journal March 2019
Quantifying Food Web Flows Using Linear Inverse Models journal November 2009
Tree mycorrhizal type predicts within-site variability in the storage and distribution of soil organic matter journal April 2018
Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls journal November 2016
Why are nitrogen-fixing trees rare at higher compared to lower latitudes? journal November 2017
Sources of plant-derived carbon and stability of organic matter in soil: implications for global change journal August 2009
The mycorrhizal-associated nutrient economy: a new framework for predicting carbon-nutrient couplings in temperate forests journal April 2013
Is soil carbon mostly root carbon? Mechanisms for a specific stabilisation journal February 2005
DAYCENT and its land surface submodel: description and testing journal December 1998
Carbon:Nitrogen:Phosphorus Stoichiometry in Fungi: A Meta-Analysis journal July 2017
The temperature response of soil microbial efficiency and its feedback to climate journal January 2013
Long-term patterns of mass loss during the decomposition of leaf and fine root litter: an intersite comparison journal May 2009
Regulation and function of root exudates journal June 2009
On the mechanism of specific phosphate adsorption by hydroxylated mineral surfaces: A review journal August 1985
Formation of soil organic matter via biochemical and physical pathways of litter mass loss journal September 2015
Priming of soil organic matter: Chemical structure of added compounds is more important than the energy content journal May 2017
The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model journal April 2003
Rhizosphere priming: a nutrient perspective journal January 2013
C:N:P stoichiometry and nutrient limitation of the soil microbial biomass in a grazed grassland site under experimental P limitation or excess journal June 2012
The role of litter-feeding macroarthropods in decomposition processes: A reappraisal of common views journal September 2014
The stoichiometric legacy of fire regime regulates the roles of micro‐organisms and invertebrates in decomposition journal March 2019
Transport of Carbon and Nitrogen Between Litter and Soil Organic Matter in a Northern Hardwood Forest journal February 2011
Microbial uptake of low-molecular-weight organic substances out-competes sorption in soil journal June 2010
Applying population and community ecology theory to advance understanding of belowground biogeochemistry journal January 2017
Global patterns in fine root decomposition: climate, chemistry, mycorrhizal association and woodiness journal March 2019
Ecoenzymatic Stoichiometry and Ecological Theory journal December 2012
Pyrogenic organic matter in soil: Its origin and occurrence, its chemistry and survival in soil environments journal October 2011
Unifying soil organic matter formation and persistence frameworks: the MEMS model journal January 2019
Global variation of soil microbial carbon-use efficiency in relation to growth temperature and substrate supply journal April 2019
Dynamic relationships between microbial biomass, respiration, inorganic nutrients and enzyme activities: informing enzyme-based decomposition models journal January 2013
Leveraging Environmental Research and Observation Networks to Advance Soil Carbon Science journal May 2019
Microbially Derived Inputs to Soil Organic Matter: Are Current Estimates Too Low? journal December 2007
Root carbon inputs to the rhizosphere stimulate extracellular enzyme activity and increase nitrogen availability in temperate forest soils journal December 2012
Major mechanisms contributing to the macrofauna-mediated slow down of litter decomposition journal December 2015
Improving understanding of soil organic matter dynamics by triangulating theories, measurements, and models journal July 2018
Tracing Root vs. Residue Carbon into Soils from Conventional and Alternative Cropping Systems journal January 2010
Diverse Mycorrhizal Associations Enhance Terrestrial C Storage in a Global Model journal April 2019
Detritus, trophic dynamics and biodiversity: Detritus, trophic dynamics and biodiversity journal June 2004
Inositol phosphates in the environment
  • Turner, Benjamin L.; Papházy, Michael J.; Haygarth, Philip M.
  • Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, Vol. 357, Issue 1420 https://doi.org/10.1098/rstb.2001.0837
journal April 2002
Construction and simulation of the Bradyrhizobium diazoefficiens USDA110 metabolic network: a comparison between free-living and symbiotic states journal January 2017
Dual role of lignin in plant litter decomposition in terrestrial ecosystems journal February 2010
Stoichiometry constrains microbial response to root exudation- insights from a model and a field experiment in a temperate forest journal January 2013
Soil organic matter turnover is governed by accessibility not recalcitrance journal March 2012
Stoichiometric controls on carbon, nitrogen, and phosphorus dynamics in decomposing litter journal February 2010
The Millennial model: in search of measurable pools and transformations for modeling soil carbon in the new century journal December 2017
Arbuscular mycorrhiza and nitrogen: implications for individual plants through to ecosystems journal June 2014
Global patterns of terrestrial biological nitrogen (N 2 ) fixation in natural ecosystems journal June 1999
Mycorrhizal Hyphal Turnover as a Dominant Process for Carbon Input into Soil Organic Matter journal March 2006
C:N:P stoichiometry in soil: is there a “Redfield ratio” for the microbial biomass? journal July 2007
Contrasting Effects of Substrate and Fertilizer Nitrogen on the Early Stages of Litter Decomposition journal September 2005
Emergent simplicity in microbial community assembly journal August 2018
Development of microbial-enzyme-mediated decomposition model parameters through steady-state and dynamic analyses journal January 2013
Scaling microbial biomass, metabolism and resource supply journal December 2014
Detritivory: stoichiometry of a neglected trophic level journal February 2008
Nitrogen release from roots of alfalfa and soybean grown in sand culture journal May 1989
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors journal November 2015
Global-scale latitudinal patterns of plant fine-root nitrogen and phosphorus journal June 2011
Empirical evidence that soil carbon formation from plant inputs is positively related to microbial growth journal January 2013
Interaction of Inositol Hexaphosphate on Clays: Adsorption and Charging Phenomena journal January 1999
Microbial stoichiometry overrides biomass as a regulator of soil carbon and nitrogen cycling journal April 2015
The effects of feeding by Oniscus asellus on leaf litter sulfur constituents journal February 1987
Nutrient Concentrations in fine Roots journal January 2000
Simple three-pool model accurately describes patterns of long-term litter decomposition in diverse climates journal August 2008
The effect of lignin photodegradation on decomposability of Calamagrostis epigeios grass litter journal June 2011
A theoretical model of C- and N-acquiring exoenzyme activities, which balances microbial demands during decomposition journal October 2012
Phosphorus cycling in deciduous forest soil differs between stands dominated by ecto‐ and arbuscular mycorrhizal trees journal October 2015
Belowground carbon flux links biogeochemical cycles and resource-use efficiency at the global scale journal October 2016
Does Porcellio scaber (Isopoda: Oniscidea) gain from coprophagy? journal September 2002
Mycorrhiza-Induced Resistance and Priming of Plant Defenses journal May 2012
The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter? journal February 2013
Climatic controls of decomposition drive the global biogeography of forest-tree symbioses journal May 2019
A global Fine-Root Ecology Database to address below-ground challenges in plant ecology journal February 2017
CATS regression - a model-based approach to studying trait-based community assembly journal October 2014
Organic C and N stabilization in a forest soil: Evidence from sequential density fractionation journal November 2006
Global soil carbon projections are improved by modelling microbial processes journal July 2013
Microbial formation of stable soil carbon is more efficient from belowground than aboveground input journal November 2018
Networks of power and influence: the role of mycorrhizal mycelium in controlling plant communities and agroecosystem functioning journal August 2004
The contentious nature of soil organic matter journal November 2015
Integrating microbial physiology and physio-chemical principles in soils with the MIcrobial-MIneral Carbon Stabilization (MIMICS) model journal January 2014
Climate, Leaf Litter Chemistry and Leaf Litter Decomposition in Terrestrial Ecosystems: A Triangular Relationship journal September 1997
The interaction between abiotic photodegradation and microbial decomposition under ultraviolet radiation journal January 2015
Contrasting dynamics and trait controls in first-order root compared with leaf litter decomposition journal September 2018
The C:N:P:S stoichiometry of soil organic matter journal September 2016
Soil-carbon response to warming dependent on microbial physiology journal April 2010
Microbial physiology and necromass regulate agricultural soil carbon accumulation journal December 2015
A conceptual model of organo-mineral interactions in soils: self-assembly of organic molecular fragments into zonal structures on mineral surfaces journal June 2007
Microbial and abiotic controls on mineral-associated organic matter in soil profiles along an ecosystem gradient journal July 2019
Earthworm effects on the incorporation of litter C and N into soil organic matter in a sugar maple forest journal July 2013
Unifying soil organic matter formation and persistence frameworks: the MEMS model posted_content October 2018
Regulation and function of root exudates journal December 2008
Storage and stability of organic carbon in soils as related to depth, occlusion within aggregates, and attachment to minerals other January 2013
Climatic controls of decomposition drive the global biogeography of forest-tree symbioses text January 2019
Decelerated carbon cycling by ectomycorrhizal fungi is controlled by substrate quality and community composition journal November 2019
Microbial and abiotic controls on mineral-associated organic matter in soil profiles along an ecosystem gradient other January 2019
Integrating microbial physiology and physiochemical principles in soils with the MIcrobial-MIneral Carbon Stabilization (MIMICS) model journal January 2014
Principles of Terrestrial Ecosystem Ecology book January 2002

Figures / Tables (6)


Similar Records

Stoichiometry of microbial carbon use efficiency in soils
Journal Article · Wed Mar 23 00:00:00 EDT 2016 · Ecological Monographs · OSTI ID:1570115

The “Who” and “How” of Microbial Control over Soil Carbon Dynamics: a Multi-omics, Stable Isotope Probing, and Modeling Approach
Technical Report · Mon Aug 15 00:00:00 EDT 2016 · OSTI ID:1570115

Missing links in the root-soil organic matter continuum
Journal Article · Thu Jan 01 00:00:00 EST 2009 · New Phytologist · OSTI ID:1570115

Related Subjects