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RpoN (σ54) Is Required for Floc Formation but Not for Extracellular Polysaccharide Biosynthesis in a Floc-Forming Aquincola tertiaricarbonis Strain

Journal Article · · Applied and Environmental Microbiology
DOI:https://doi.org/10.1128/AEM.00709-17· OSTI ID:1567087
 [1];  [1];  [2];  [2];  [1];  [3];  [4];  [5];  [6];  [2];  [4];  [5];  [2];  [7]
  1. Chinese Academy of Sciences, Wuhan (China); Univ. of Chinese Academy of Sciences, Beijing (China)
  2. Chinese Academy of Sciences, Wuhan (China)
  3. Univ. of Oklahoma, Norman, OK (United States); Henan Agricultural Univ., Zhengzhou (China)
  4. Chinese Academy of Sciences, Chengdu (China)
  5. Univ. of Oklahoma, Norman, OK (United States)
  6. Hubei Engineering Univ., Xiaogan (China)
  7. Univ. of Minnesota, Minneapolis, MN (United States)
Some bacteria are capable of forming flocs, in which bacterial cells become self-flocculated by secreted extracellular polysaccharides and other biopolymers. The floc-forming bacteria play a central role in activated sludge, which has been widely utilized for the treatment of municipal sewage and industrial wastewater. Here, we use a floc-forming bacterium, Aquincola tertiaricarbonis RN12, as a model to explore the biosynthesis of extracellular polysaccharides and the regulation of floc formation. A large gene cluster for exopolysaccharide biosynthesis and a gene encoding the alternative sigma factor RpoN1, one of the four paralogues, have been identified in floc formation-deficient mutants generated by transposon mutagenesis, and the gene functions have been further confirmed by genetic complementation analyses. Interestingly, the biosynthesis of exopolysaccharides remained in the rpoN1-disrupted flocculation-defective mutants, but most of the exopolysaccharides were secreted and released rather than bound to the cells. Furthermore, the expression of exopolysaccharide biosynthesis genes seemed not to be regulated by RpoN1. Taken together, our results indicate that RpoN1 may play a role in regulating the expression of a certain gene(σs) involved in the self-flocculation of bacterial cells but not in the biosynthesis and secretion of exopolysaccharides required for floc formation.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1567087
Journal Information:
Applied and Environmental Microbiology, Journal Name: Applied and Environmental Microbiology Journal Issue: 14 Vol. 83; ISSN 0099-2240
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (76)

An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud: MG-RAST METAGENOMICS DATA ANALYSIS USING CLOUD RESOURCES
  • Wilke, Andreas; Wilkening, Jared; Glass, Elizabeth M.
  • Concurrency and Computation: Practice and Experience, Vol. 23, Issue 17 https://doi.org/10.1002/cpe.1799
journal July 2011
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method journal December 2001
Enzymatic synthesis of poly-?-hydroxybutyrate inZoogloea ramigera journal November 1976
Truncated type IV pilin PilA108 activates the intramembrane protease AlgW to cleave MucA and PilA108 itself in vitro journal June 2016
Effect of monorhamnolipid on the degradation of n-hexadecane by Candida tropicalis and the association with cell surface properties journal February 2011
Role of alternative sigma factor 54 (RpoN) from Vibrio anguillarum M3 in protease secretion, exopolysaccharide production, biofilm formation, and virulence journal September 2012
Changes in the microbial community structure of filaments and floc formers in response to various carbon sources and feeding patterns journal May 2014
A rapid method for detecting bacterial polyhydroxyalkanoates in intact cells by Fourier transform infrared spectroscopy journal April 1999
Isolation and characterization of plant cell walls and cell wall components book January 1986
Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes journal December 1995
Physicochemical analyses of the exopolysaccharides produced by a marine biofouling bacterium, Vibrio alginolyticus journal January 2003
Isolation and biochemical characterization of extracellular polymeric substances from Pseudomonas aeruginosa book January 2001
Capillary gas chromatographic—mass spectrometric profiles of trimethylsilyl derivatives of organic acids from amniotic fluids of different gestational age journal March 1982
Multiple sequence alignment with Clustal X journal October 1998
Genetic analyses of bacterial biofilm formation journal December 1999
Isolation and Characterization of Plant Cell Walls and Cell Wall Components book December 1987
Effect of solids retention time on antibiotics removal performance and microbial communities in an A/O-MBR process journal February 2012
Alternative sigma factor RpoN2 is required for flagellar motility and full virulence of Xanthomonas oryzae pv. oryzae journal January 2015
Biofilms: implications in bioremediation journal September 2006
Comparative genomics analyses on EPS biosynthesis genes required for floc formation of Zoogloea resiniphila and other activated sludge bacteria journal October 2016
Colorimetric Method for Determination of Sugars and Related Substances journal March 1956
Gene expression in Pseudomonas aeruginosa biofilms journal October 2001
Understanding biofilm resistance to antibacterial agents journal February 2003
Revealing a world of biofilms — the pioneering research of Bill Costerton journal August 2014
Probiotic properties of a phytase producing Pediococcus acidilactici strain SMVDUDB2 isolated from traditional fermented cheese product, Kalarei journal February 2020
Composition analysis of fractions of extracellular polymeric substances from an activated sludge culture and identification of dominant forces affecting microbial aggregation journal June 2016
The four different σ54 factors of Rhodobacter sphaeroides are not functionally interchangeable: Specificity of the R. sphaeroidesσ54 factors journal October 2002
Regulated proteolysis controls mucoid conversion in Pseudomonas aeruginosa journal April 2007
Genetic footprinting with mariner-based transposition in Pseudomonasaeruginosa journal August 2000
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0 journal October 2013
Correlating protein footprinting with mutational analysis in the bacterial transcription factor sigma54 (sigmaN) journal February 2002
Promoter and regulon analysis of nitrogen assimilation factor, σ54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis journal December 2009
Characterization of the RpoN regulon reveals differential regulation of T6SS and new flagellar operons in Vibrio cholerae O37 strain V52 journal June 2012
Swimming Motility, a Virulence Trait of Ralstonia solanacearum , Is Regulated by FlhDC and the Plant Host Environment journal June 2004
The Role of Motility and Aerotaxis in the Selective Increase of Avirulent Bacteria in Still Broth Cultures of Pseudomonas solanacearum journal May 1973
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities journal January 2007
Aquincola tertiaricarbonis gen. nov., sp. nov., a tertiary butyl moiety-degrading bacterium journal June 2007
Cultivation of Aquincola tertiaricarbonis L108 on the fuel oxygenate intermediate tert-butyl alcohol induces aerobic anoxygenic photosynthesis at extremely low feeding rates journal July 2013
Degradation of fuel oxygenates and their main intermediates by Aquincola tertiaricarbonis L108 journal May 2008
ClpXP proteases positively regulate alginate overexpression and mucoid conversion in Pseudomonas aeruginosa journal July 2008
Structure and expression of the alternative sigma factor, RpoN, in Rhodobacter capsulatus; physiological relevance of an autoactivated nifU2-rpoN superoperon journal January 1994
A novel, conserved cluster of genes promotes symbiotic colonization and σ 54 -dependent biofilm formation by Vibrio fischeri journal July 2005
Type IV pili: e pluribus unum? journal May 2008
Analysis and glycosyl composition of the exopolysaccharide isolated from the floc-forming wastewater bacterium Thauera sp. MZ1T journal August 2004
Capsular polysaccharides interfere with adherence of Acinetobacter calcoaceticus to hydrocarbon journal March 1983
Sequential hydrophobic partitioning of cells of Pseudomonas aeruginosa gives rise to variants of increasing cell-surface hydrophobicity journal May 2007
Formation of Alkenes via Degradation of tert -Alkyl Ethers and Alcohols by Aquincola tertiaricarbonis L108 and Methylibium spp. journal July 2011
Flocculation-Related Gene Identification by Whole-Genome Sequencing of Thauera aminoaromatica MZ1T Floc-Defective Mutants journal December 2015
Constitutive Expression of the Cytochrome P450 EthABCD Monooxygenase System Enables Degradation of Synthetic Dialkyl Ethers in Aquincola tertiaricarbonis L108 journal January 2013
A new medium for the enumeration and subculture of bacteria from potable water. journal January 1985
Proteomic Analysis Reveals Differential Protein Expression by Bacillus cereus during Biofilm Formation journal June 2002
Identification of Genes Involved in Cytochrome c Biogenesis in Shewanella oneidensis, Using a Modified mariner Transposon journal August 2005
Burkholderia cenocepacia Requires the RpoN Sigma Factor for Biofilm Formation and Intracellular Trafficking within Macrophages journal January 2008
Adherence of Acinetobacter calcoaceticus RAG-1 to human epithelial cells and to hexadecane. journal January 1981
Bacterial Degradation of tert-Amyl Alcohol Proceeds via Hemiterpene 2-Methyl-3-Buten-2-ol by Employing the Tertiary Alcohol Desaturase Function of the Rieske Nonheme Mononuclear Iron Oxygenase MdpJ journal December 2011
Differential Regulation of Rhizobium etli rpoN2 Gene Expression during Symbiosis and Free-Living Growth journal July 1998
The Bacterial Enhancer-Dependent sigma 54 (sigma N) Transcription Factor journal August 2000
Phenotypic Characterization of Streptococcus pneumoniae Biofilm Development journal March 2006
The Ethanologenic Bacterium Zymomonas mobilis Divides Asymmetrically and Exhibits Heterogeneity in DNA Content journal February 2021
A new medium for the enumeration and subculture of bacteria from potable water. journal January 1985
Adherence of Acinetobacter calcoaceticus RAG-1 to human epithelial cells and to hexadecane. journal January 1981
Bradyrhizobium japonicum has two differentially regulated, functional homologs of the sigma 54 gene (rpoN). journal February 1991
Isolation and characterization of the nifUSVW-rpoN gene cluster from Rhodobacter sphaeroides. journal June 1992
Location of the rpoN gene on the physical map of Escherichia coli. journal March 1993
Pseudomonas aeruginosa Twitching Motility: Type IV Pili in Action journal October 2012
Iron-Oxidizing Bacteria: An Environmental and Genomic Perspective journal October 2010
Biofilm Formation as Microbial Development journal October 2000
Type IV Pili and Twitching Motility journal October 2002
The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008
An extracytoplasmic function sigma factor-dependent periplasmic glutathione peroxidase is involved in oxidative stress response of Shewanella oneidensis journal January 2015
Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli journal October 2009
Genes That Influence Swarming Motility and Biofilm Formation in Variovorax paradoxus EPS journal February 2012
Bacillus cereus ATCC 14579 RpoN (Sigma 54) Is a Pleiotropic Regulator of Growth, Carbohydrate Metabolism, Motility, Biofilm Formation and Toxin Production journal August 2015
Biofilms: Microbial Life on Surfaces journal September 2002
rpoN1, but not rpoN2, is required for twitching motility, natural competence, growth on nitrate, and virulence of Ralstonia solanacearum journal March 2015
Microtiter Dish Biofilm Formation Assay journal January 2011

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