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Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China)

Journal Article · · Molecular Ecology
DOI:https://doi.org/10.1111/mec.14151· OSTI ID:1567086
 [1];  [2];  [3];  [4];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [5];  [3];  [6];  [7];  [6];  [6];  [8]
  1. Sun Yat-Sen Univ., Guangzhou, (China); Chinese Academy of Sciences (CAS), Wuhan (China)
  2. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
  3. Chinese Academy of Sciences (CAS), Wuhan (China)
  4. Chinese Academy of Sciences (CAS), Beijing (China)
  5. Sun Yat-Sen Univ., Guangzhou, (China)
  6. Univ. of Oklahoma, Norman, OK (United States)
  7. Sun Yat-Sen Univ., Guangzhou, (China); Univ. of Oklahoma, Norman, OK (United States)
  8. Univ. of Oklahoma, Norman, OK (United States); Tsinghua Univ., Beijing (China); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Discovering which environmental factors govern community diversity patterns and how ecological processes drive community turnover are key questions related to understand the community assembly. Yet, the ecological mechanisms regulating long-term variations of bacterioplankton communities in lake ecosystems remain poorly understood. Here we present nearly a decade-long study of bacterioplankton communities from the eutrophic Lake Donghu (Wuhan, China) using 16S rRNA gene amplicon sequencing with MiSeq platform. We found strong repeatable seasonal diversity patterns in terms of both common (detected in more than 50% samples) and dominant (relative abundance >1%) bacterial taxa turnover. Moreover, community composition tracked the seasonal temperature gradient, suggesting that temperature is a key environmental factor controlling observed diversity patterns. Total phosphorus also contributed significantly to the seasonal shifts in bacterioplankton composition. However, any spatial pattern of bacterioplankton communities across the main lake areas within season was overwhelmed by their temporal variabilities. Phylogenetic analysis further indicated that 75%-82% of community turnover was governed by homogeneous selection due to consistent environmental conditions within seasons, suggesting that the microbial communities in Lake Donghu are mainly controlled by niche-based processes. Therefore, dominant niches available within seasons might be occupied by similar combinations of bacterial taxa with modest dispersal rates throughout different lake areas.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23); National Natural Science Foundation of China (NNSFC)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1567086
Alternate ID(s):
OSTI ID: 1372998
Journal Information:
Molecular Ecology, Journal Name: Molecular Ecology Journal Issue: 14 Vol. 26; ISSN 0962-1083
Publisher:
WileyCopyright Statement
Country of Publication:
United States
Language:
English

References (51)

Changes in assembly processes in soil bacterial communities following a wildfire disturbance journal February 2013
Marine microbial community dynamics and their ecological interpretation journal February 2015
Non-Random Assembly of Bacterioplankton Communities in the Subtropical North Pacific Ocean journal January 2011
Synchrony and seasonality in bacterioplankton communities of two temperate rivers journal November 2005
Bacterial and Archaeal Community Structure and its Patterns book January 2008
Exchange of Phosphorus Across the Sediment-Water Interface book January 1988
Exchange of phosphorus across the sediment-water interface journal December 1988
Temporal Patterns in Bacterial Communities in Three Temperate Lakes of Different Trophic Status journal December 2003
Annual Patterns in Bacterioplankton Community Variability in a Humic Lake journal October 2004
Genetic Diversity of Plankton Community as Depicted by PCR-DGGE Fingerprinting and its Relation to Morphological Composition and Environmental Factors in Lake Donghu journal June 2007
Spatiotemporal pattern of bacterioplankton in Donghu Lake journal May 2014
Bacterioplankton community composition in a boreal forest lake journal October 1998
Functional and phylogenetic assembly of microbial communities in the human microbiome journal May 2014
Ubiquitous dispersal of microbial species journal August 1999
Consequences of changing biodiversity journal May 2000
Archaeal dominance in the mesopelagic zone of the Pacific Ocean journal January 2001
Defining seasonal marine microbial community dynamics journal August 2011
Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient journal October 2011
Temporal variation of β-diversity and assembly mechanisms in a bacterial metacommunity journal December 2011
A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, WI, USA journal October 2012
Biogeography of bacterial communities exposed to progressive long-term environmental change journal December 2012
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight journal July 2013
Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes journal February 2013
Quantifying community assembly processes and identifying features that impose them journal June 2013
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years journal September 2014
Microbial community structure and its functional implications journal May 2009
UPARSE: highly accurate OTU sequences from microbial amplicon reads journal August 2013
Impacts of the Three Gorges Dam on microbial structure and potential function journal February 2015
Annually reoccurring bacterial communities are predictable from ocean conditions journal August 2006
Microbial diversity in the deep sea and the underexplored "rare biosphere" journal July 2006
A latitudinal diversity gradient in planktonic marine bacteria journal May 2008
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes journal December 2012
Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession journal March 2015
Prokaryotes: The unseen majority journal June 1998
PyNAST: a flexible tool for aligning sequences to a template alignment journal November 2009
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix journal April 2009
Environmental filtering decreases with fish development for the assembly of gut microbiota: Gut microbiota assembly across fish development journal June 2016
Bacterioplankton community composition in a boreal forest lake journal October 1998
Spatiotemporal heterogeneity of plankton communities in Lake Donghu, China, as revealed by PCR–denaturing gradient gel electrophoresis and its relation to biotic and abiotic factors: Genetic diversity of plankton communities in Lake Donghu journal March 2008
Global Dispersal of Free-Living Microbial Eukaryote Species journal May 2002
OCEANOGRAPHY: Microbes, Molecules, and Marine Ecosystems journal March 2004
Microbial Ecology of Ocean Biogeochemistry: A Community Perspective journal May 2008
OCEANOGRAPHY: Microbial Control of Oceanic Carbon Flux: The Plot Thickens journal May 1998
pH Influences the Importance of Niche-Related and Neutral Processes in Lacustrine Bacterioplankton Assembly journal February 2015
Phylogenies and Community Ecology journal November 2002
Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis journal June 2015
Succession of endophytic fungi and arbuscular mycorrhizal fungi associated with the growth of plant and their correlation with secondary metabolites in the roots of plants journal April 2021
Using null models to disentangle variation in community dissimilarity from variation in α-diversity journal February 2011
Dominance of bacterial biomass in the Sargasso Sea and its ecological implications journal January 1989
Estimating and mapping ecological processes influencing microbial community assembly journal May 2015
Using null models to disentangle variation in community dissimilarity from variation in α-diversity collection January 2016

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