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Title: Histone H4 Acetylation Differentially Modulates Arginine Methylation by an in Cis Mechanism

Journal Article · · Journal of Biological Chemistry

Histone H4 undergoes extensive post-translational modifications (PTMs) at its N-terminal tail. Many of these PTMs profoundly affect the on and off status of gene transcription. The molecular mechanism by which histone PTMs modulate genetic and epigenetic processes is not fully understood. In particular, how a PTM mark affects the presence and level of other histone modification marks needs to be addressed and is essential for better understanding the molecular basis of histone code hypothesis. To dissect the interplaying relationship between different histone modification marks, we investigated how individual lysine acetylations and their different combinations at the H4 tail affect Arg-3 methylation in cis. Our data reveal that the effect of lysine acetylation on arginine methylation depends on the site of acetylation and the type of methylation. Although certain acetylations present a repressive impact on PRMT1-mediated methylation (type I methylation), lysine acetylation generally is correlated with enhanced methylation by PRMT5 (type II dimethylation). In particular, Lys-5 acetylation decreases the activity of PRMT1 but increases that of PRMT5. Furthermore, circular dichroism study and computer simulation demonstrate that hyperacetylation increases the content of ordered secondary structures at the H4 tail region. These findings provide new insights into the regulatory mechanism of Arg-3 methylation by H4 acetylation and unravel the complex intercommunications that exist between different the PTM marks in cis. The divergent activities of PRMT1 and PRMT5 with respect to different acetyl-H4 substrates suggest that type I and type II protein-arginine methyltransferases use distinct molecular determinants for substrate recognition and catalysis.

Research Organization:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); UT-Battelle LLC/ORNL, Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
DOE Contract Number:
AC05-00OR22725
OSTI ID:
1564775
Journal Information:
Journal of Biological Chemistry, Vol. 286, Issue 23; ISSN 0021-9258
Publisher:
American Society for Biochemistry and Molecular Biology
Country of Publication:
United States
Language:
English

References (57)

The language of covalent histone modifications journal January 2000
Chromatin Modifications and Their Function journal February 2007
The Role of Chromatin during Transcription journal February 2007
The complex language of chromatin regulation during transcription journal May 2007
The many faces of histone lysine methylation journal June 2002
Chemical regulation of epigenetic modifications: Opportunities for new cancer therapy journal September 2008
Chromatin remodeling and cancer, part I: covalent histone modifications journal September 2007
Multivalent engagement of chromatin modifications by linked binding modules journal December 2007
Analysis of Histones in Xenopus laevis : I. A DISTINCT INDEX OF ENRICHED VARIANTS AND MODIFICATIONS EXISTS IN EACH CELL TYPE AND IS REMODELED DURING DEVELOPMENTAL TRANSITIONS journal October 2008
Analysis of Histones in Xenopus laevis : II. MASS SPECTROMETRY REVEALS AN INDEX OF CELL TYPE-SPECIFIC MODIFICATIONS ON H3 AND H4 journal October 2008
Histone modification patterns and epigenetic codes journal September 2009
Regulation of NuA4 Histone Acetyltransferase Activity in Transcription and DNA Repair by Phosphorylation of Histone H4 journal August 2005
Phosphorylation of Histone H4 Serine 1 during DNA Damage Requires Casein Kinase II in S. cerevisiae journal April 2005
Methylation of Histone H4 at Arginine 3 Facilitating Transcriptional Activation by Nuclear Hormone Receptor journal May 2001
The Transcriptional Coactivators p300 and CBP Are Histone Acetyltransferases journal November 1996
Histone Acetylation and Deacetylation: Identification of Acetylation and Methylation Sites of HeLa Histone H4 by Mass Spectrometry journal July 2002
Identification of novel histone post-translational modifications by peptide mass fingerprinting journal August 2003
A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin journal June 2004
Quantitative Proteomic Analysis of Post-translational Modifications of Human Histones journal April 2006
Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells journal March 2008
Combinatorial Modification of Human Histone H4 Quantitated by Two-dimensional Liquid Chromatography Coupled with Top Down Mass Spectrometry journal April 2008
Overlapping but Distinct Patterns of Histone Acetylation by the Human Coactivators p300 and PCAF within Nucleosomal Substrates journal January 1999
Structural and Functional Conservation of the NuA4 Histone Acetyltransferase Complex from Yeast to Humans journal February 2004
Tip60 acetylates six lysines of a specific class in core histones in vitro journal December 1998
Novel Substrate Specificity of the Histone Acetyltransferase Activity of HIV-1-Tat Interactive Protein Tip60 journal December 1997
A Human Protein Complex Homologous to the Drosophila MSL Complex Is Responsible for the Majority of Histone H4 Acetylation at Lysine 16 journal October 2005
Subunit Composition and Substrate Specificity of a MOF-containing Histone Acetyltransferase Distinct from the Male-specific Lethal (MSL) Complex journal December 2009
The H4 Tail Domain Participates in Intra- and Internucleosome Interactions with Protein and DNA during Folding and Oligomerization of Nucleosome Arrays journal November 2008
Switching on Chromatin: Mechanistic Role of Histone H4-K16 Acetylation journal June 2006
Deposition-related histone acetylation in micronuclei of conjugating Tetrahymena. journal December 1985
Crosstalk between CARM1 Methylation and CBP Acetylation on Histone H3 journal December 2002
Arginine Methylation journal April 2005
Neural Activity Between Ovaries and the Prevertebral Celiac–Superior Mesenteric Ganglia Varies During the Estrous Cycle of the Rat journal January 2005
State of the Arg journal July 2001
Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails journal September 2001
Protein methylation journal December 1993
Human SWI/SNF-Associated PRMT5 Methylates Histone H3 Arginine 8 and Negatively Regulates Expression of ST7 and NM23 Tumor Suppressor Genes journal October 2004
DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data journal July 2004
Automatic atom type and bond type perception in molecular mechanical calculations journal October 2006
WHAT IF: A molecular modeling and drug design program journal March 1990
Comparison of multiple Amber force fields and development of improved protein backbone parameters journal November 2006
Generalized Born Model with a Simple, Robust Molecular Volume Correction journal December 2006
Exploring Expression Data: Identification and Analysis of Coexpressed Genes journal November 1999
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features journal December 1983
An N α -Acetyltransferase Responsible for Acetylation of the N-terminal Residues of Histones H4 and H2A journal August 2003
Kinetic Mechanism of Protein Arginine Methyltransferase 1 journal September 2008
A Dual-Mode Fluorescence Strategy for Screening HAT Modulators journal February 2009
Crystal structure of the nucleosome core particle at 2.8 Å resolution journal September 1997
Histones and histone modifications journal July 2004
Protein Arginine Methyltransferase 1:  Positively Charged Residues in Substrate Peptides Distal to the Site of Methylation Are Important for Substrate Binding and Catalysis journal November 2007
Structure of the Predominant Protein Arginine Methyltransferase PRMT1 and Analysis of Its Binding to Substrate Peptides journal May 2003
Euchromatic domains in plant chromosomes as revealed by H4 histone acetylation and early DNA replication journal April 1999
Genomic characterization reveals a simple histone H4 acetylation code journal March 2005
Acetylation and deacetylation of histone H4 continue through metaphase with depletion of more-acetylated isoforms and altered site usage journal May 1989
Histone acetylation in chromatin and chromosomes journal August 1995
A New Class of C. elegans synMuv Genes Implicates a Tip60/NuA4-like HAT Complex as a Negative Regulator of Ras Signaling journal April 2004
Mapping Global Histone Acetylation Patterns to Gene Expression journal June 2004

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