Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)

Bahri, Bochra A.; Daverdin, Guillaume; Xu, Xiangyang; Cheng, Jan-Fang; Barry, Kerrie W.; Brummer, E. Charles; Devos, Katrien M.

doi:10.1186/s12862-018-1193-2

Title: Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)

Journal Article · Thu Jun 14 00:00:00 EDT 2018 · BMC Evolutionary Biology (Online)

DOI:https://doi.org/10.1186/s12862-018-1193-2· OSTI ID:1559793

^[1]; Daverdin, Guillaume ^[2]; Xu, Xiangyang ^[2]; Cheng, Jan-Fang ^[3]; Barry, Kerrie W. ^[3]; Brummer, E. Charles ^[4]; Devos, Katrien M. ^[2]

Univ. of Georgia, Athens, GA (United States). Dept. of Crop and Soil Sciences; Univ. of Carthage,Tunis (Tunisia). Laboratory of Bioaggressors and Integrated Protection in Agriculture
Univ. of Georgia, Athens, GA (United States). Dept. of Crop and Soil Sciences
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Univ. of California, Davis, CA (United States). Plant Sciences Dept.

Advances in genomic technologies have expanded our ability to accurately and exhaustively detect natural genomic variants that can be applied in crop improvement and to increase our knowledge of plant evolution and adaptation. Switchgrass (Panicum virgatum L.), an allotetraploid (2n = 4× = 36) perennial C4 grass (Poaceae family) native to North America and a feedstock crop for cellulosic biofuel production, has a large potential for genetic improvement due to its high genotypic and phenotypic variation. In this study, we analyzed single nucleotide polymorphism (SNP) variation in 372 switchgrass genotypes belonging to 36 accessions for 12 genes putatively involved in biomass production to investigate signatures of selection that could have led to ecotype differentiation and to population adaptation to geographic zones.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE Office of Science (SC), Basic Energy Sciences (BES)

Grant/Contract Number:: AC02-05CH11231; PS02-06ER64304

OSTI ID:: 1559793

Alternate ID(s):: OSTI ID: 1544018

Journal Information:: BMC Evolutionary Biology (Online), Vol. 18, Issue 1; ISSN 1471-2148

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 9 works

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59 BASIC BIOLOGICAL SCIENCES
Evolutionary Biology
Genetics & Heredity

Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.) Bahri, Bochra; Daverdin, Guillaume; Xu, Xiangyang https://doi.org/10.6084/m9.figshare.c.4133384 The current record is supplemented by this collection	collection	January 2018
Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.) Bahri, Bochra; Daverdin, Guillaume; Xu, Xiangyang https://doi.org/10.6084/m9.figshare.c.4133384.v1 The current record is supplemented by this collection	collection	January 2018
Additional file 1: of Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.) Bahri, Bochra; Daverdin, Guillaume; Xu, Xiangyang https://doi.org/10.6084/m9.figshare.6529643.v1 The current record is supplemented by this text	text	January 2018
Additional file 1: of Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.) Bahri, Bochra; Daverdin, Guillaume; Xu, Xiangyang https://doi.org/10.6084/m9.figshare.6529643 The current record is supplemented by this text	text	January 2018