Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
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January 2012 |
Crystal structure of unliganded phosphofructokinase from Escherichia coli
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June 1989 |
Protein Acetylation in Archaea, Bacteria, and Eukaryotes
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January 2010 |
Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes
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September 2017 |
Mutational analysis of an Escherichia coli fourteen-gene operon for phosphonate degradation, using TnphoA' elements.
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June 1993 |
Energetic Coupling between Ligand Binding and Dimerization in Escherichia coli Phosphoglycerate Mutase
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March 2016 |
Global Transitions of Proteins Explored by a Multiscale Hybrid Methodology: Application to Adenylate Kinase
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October 2013 |
The Protein Acetyltransferase PatZ from Escherichia coli Is Regulated by Autoacetylation-induced Oligomerization
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August 2015 |
Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline: APPLICATION TO PROTEIN ACETYLATION AND PHOSPHORYLATION
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March 2012 |
Nε−Lysine Acetylation of a Bacterial Transcription Factor Inhibits Its DNA-Binding Activity
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December 2010 |
Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics
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April 2015 |
A Spring-loaded Release Mechanism Regulates Domain Movement and Catalysis in Phosphoglycerate Kinase
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February 2011 |
Bacterial GCN5-Related N -Acetyltransferases: From Resistance to Regulation
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February 2016 |
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants the Keio collection
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February 2006 |
PIQED: automated identification and quantification of protein modifications from DIA-MS data
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July 2017 |
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
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February 2010 |
Similarity in Shape Dictates Signature Intrinsic Dynamics Despite No Functional Conservation in TIM Barrel Enzymes
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March 2016 |
A previously uncharacterized gene, yjfO (bsmA), influences Escherichia coli biofilm formation and stress response
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October 2009 |
The Phyre2 web portal for protein modeling, prediction and analysis
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May 2015 |
Structure of Acyl Carrier Protein Bound to FabI, the FASII Enoyl Reductase from Escherichia coli
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September 2006 |
Quantitative, Multiplexed Assays for Low Abundance Proteins in Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution
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October 2007 |
MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments
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May 2015 |
Acetylation Regulates the Stability of a Bacterial Protein: Growth Stage-Dependent Modification of RNase R
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October 2011 |
Identification of the Protein Acetyltransferase (Pat) Enzyme that Acetylates Acetyl-CoA Synthetase in Salmonella enterica
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July 2004 |
Expanding Proteome Coverage with Orthogonal-specificity α-Lytic Proteases
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January 2014 |
Involvement of protein acetylation in glucose-induced transcription of a stress-responsive promoter: Acetylation of RNA polymerase
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July 2011 |
cAMP-CRP co-ordinates the expression of the protein acetylation pathway with central metabolism in Escherichia coli: cAMP-CRP regulates protein acetylation in E. coli
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November 2011 |
Localized expression profiles of rpoS in Escherichia coli biofilms
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August 2009 |
Functional Annotation and Kinetic Characterization of PhnO from Salmonella enterica †
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March 2006 |
ModBase, a database of annotated comparative protein structure models, and associated resources
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November 2010 |
Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli
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July 2013 |
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics
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January 2015 |
mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry
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November 2015 |
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
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December 2008 |
Acetylation of the Response Regulator RcsB Controls Transcription from a Small RNA Promoter
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July 2013 |
Significance of rpoS during maturation of Escherichia coli biofilms
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April 2008 |
The world of protein acetylation
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October 2016 |
N ε-Lysine Acetylation Control Conserved in All Three Life Domains: The relative simplicity of studying microbes could prove critical for understanding this posttranslational modification system
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January 2010 |
Reversible acetylation on Lys501 regulates the activity of RNase II
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February 2016 |
Acetyladenylate or its derivative acetylates the chemotaxis protein CheY in vitro and increases its activity at the flagellar switch
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October 1992 |
Gene organization and transcriptional regulation of the gntRKU operon involved in gluconate uptake and catabolism of Escherichia coli
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April 1997 |
Evidence that acetyl phosphate functions as a global signal during biofilm development: Acetyl phosphate affects biofilm development
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May 2003 |
In Salmonella enterica, the sirtuin-dependent protein acylation/deacylation system (SDPADS) maintains energy homeostasis during growth on low concentrations of acetate: Acetylation of Acs helps maintain energy homeostasis
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February 2011 |
Temporal gene-expression in Escherichia coli K-12 biofilms
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February 2007 |
Studying the Lysine Acetylation of Malate Dehydrogenase
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May 2017 |
Deciphering key features in protein structures with the new ENDscript server
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April 2014 |
Metabolomic and transcriptomic stress response of Escherichia coli
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January 2010 |
Mechanistic and Structural Analysis of Aminoglycoside N -Acetyltransferase AAC(6′)-Ib and Its Bifunctional, Fluoroquinolone-Active AAC(6′)-Ib-cr Variant † ‡
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September 2008 |
Regulation of Acetyl Coenzyme A Synthetase in Escherichia coli
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August 2000 |
Structure and functions of the GNAT superfamily of acetyltransferases
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January 2005 |
Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research
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January 2006 |
Ribosomal protein modification in Escherichia coli: II. Studies of a mutant lacking the N-terminal acetylation of protein S18
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March 1980 |
The HU Regulon Is Composed of Genes Responding to Anaerobiosis, Acid Stress, High Osmolarity and SOS Induction
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February 2009 |
Biochemical evidence for relaxed substrate specificity of Nα-acetyltransferase (Rv3420c/rimI) of Mycobacterium tuberculosis
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June 2016 |
A Cooperative Folding Unit as the Structural Link for Energetic Coupling within a Protein
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December 2017 |
Structural, Kinetic and Proteomic Characterization of Acetyl Phosphate-Dependent Bacterial Protein Acetylation
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April 2014 |
Post-translational modification of RNase R is regulated by stress-dependent reduction in the acetylating enzyme Pka (YfiQ)
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November 2011 |
Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli
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November 2014 |
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
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November 2008 |
Bacterial protein acetylation: new discoveries unanswered questions
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December 2015 |
Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based Proteomics
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March 2010 |
RefSeq microbial genomes database: new representation and annotation strategy
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March 2015 |
The transcription unit architecture of the Escherichia coli genome
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November 2009 |
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
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May 2000 |
A Change in the Internal Aldimine Lysine (K42) in O -Acetylserine Sulfhydrylase to Alanine Indicates Its Importance in Transimination and as a General Base Catalyst †
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January 1996 |
Generation of High-Quality SWATH® Acquisition Data for Label-free Quantitative Proteomics Studies Using TripleTOF® Mass Spectrometers
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January 2017 |
Biochemical Characterization of the Lysine Acetylation of Tyrosyl-tRNA Synthetase in Escherichia coli
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August 2017 |
Increasing Growth Yield and Decreasing Acetylation in Escherichia coli by Optimizing the Carbon-to-Magnesium Ratio in Peptide-Based Media
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January 2017 |
Huntingtin Phosphorylation Sites Mapped by Mass Spectrometry
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June 2006 |
Insight into the 3D structure and substrate specificity of previously uncharacterized GNAT superfamily acetyltransferases from pathogenic bacteria
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January 2017 |
Protein acetylation dynamics in response to carbon overflow in E scherichia coli : Acetylation dynamics and overflow metabolism
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September 2015 |
Profile hidden Markov models
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October 1998 |
Catabolism and Detoxification of 1-Aminoalkylphosphonic Acids: N-Acetylation by the phnO Gene Product
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October 2012 |
Role of the C-terminal region in the allosteric properties of Escherichia coli phosphofructokinase-1
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May 1990 |
MS-GF+ makes progress towards a universal database search tool for proteomics
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October 2014 |
Reversible lysine acetylation is involved in DNA replication initiation by regulating activities of initiator DnaA in Escherichia coli
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August 2016 |
Biochemical analysis of Escherichia coli selenophosphate synthetase mutants. Lysine 20 is essential for catalytic activity and cysteine 17/19 for 8-azido-ATP derivatization.
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December 1993 |
Ribosomal protein modification in Escherichia coli: III. Studies of mutants lacking an acetylase activity apecific for protein L12
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November 1981 |
Study on the mechanisms of the cross-resistance to TET, PIP, and GEN in Staphylococcus aureus mediated by the Rhizoma Coptidis extracts
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January 2021 |
Cryo-EM structure of the respiratory syncytial virus RNA polymerase
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January 2020 |
Adipose-derived mesenchymal stem cells differentiate into heterogeneous cancer-associated fibroblasts in a stroma-rich xenograft model
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February 2021 |
Identification and Characterization of a Novel FosA7 Member from Fosfomycin-Resistant Escherichia coli Clinical Isolates from Canadian Hospitals
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December 2020 |
Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli.
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January 2014 |
A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature: Fluorimetric determination of %GC
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November 2002 |
RefSeq microbial genomes database: new representation and annotation strategy
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December 2013 |