PHENIX: a comprehensive Python-based system for macromolecular structure solution
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January 2010 |
Privateer: software for the conformational validation of carbohydrate structures
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November 2015 |
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
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November 2005 |
EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy
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August 2015 |
Structural Delineation of a Quaternary, Cleavage-Dependent Epitope at the gp41-gp120 Interface on Intact HIV-1 Env Trimers
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May 2014 |
Structural Survey of Broadly Neutralizing Antibodies Targeting the HIV-1 Env Trimer Delineates Epitope Categories and Characteristics of Recognition
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January 2019 |
WebLogo: A Sequence Logo Generator
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May 2004 |
Immunogenicity of Stabilized HIV-1 Envelope Trimers with Reduced Exposure of Non-neutralizing Epitopes
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December 2015 |
Comprehensive Antigenic Map of a Cleaved Soluble HIV-1 Envelope Trimer
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March 2015 |
Refinement of Protein Structures into Low-Resolution Density Maps Using Rosetta
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September 2009 |
Complete functional mapping of infection- and vaccine-elicited antibodies against the fusion peptide of HIV
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July 2018 |
An Antigenic Atlas of HIV-1 Escape from Broadly Neutralizing Antibodies Distinguishes Functional and Structural Epitopes
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February 2019 |
The Cation−π Interaction
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June 2012 |
Comparative Protein Structure Modeling Using Modeller
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September 2006 |
Broadly Neutralizing HIV Antibodies Define a Glycan-Dependent Epitope on the Prefusion Conformation of gp41 on Cleaved Envelope Trimers
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May 2014 |
Automatically Fixing Errors in Glycoprotein Structures with Rosetta
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January 2019 |
Solid-State Nuclear Magnetic Resonance Measurements of HIV Fusion Peptide 13 CO to Lipid 31 P Proximities Support Similar Partially Inserted Membrane Locations of the α Helical and β Sheet Peptide Structures
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February 2013 |
Characterization of a Prefusion-Specific Antibody That Recognizes a Quaternary, Cleavage-Dependent Epitope on the RSV Fusion Glycoprotein
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July 2015 |
CD4-Induced Activation in a Soluble HIV-1 Env Trimer
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July 2014 |
Broad and potent HIV-1 neutralization by a human antibody that binds the gp41–gp120 interface
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September 2014 |
Preferred CDRH3 lengths for antibodies with defined specificities.
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December 1998 |
Crystal Structure of a Soluble Cleaved HIV-1 Envelope Trimer
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October 2013 |
Design and structure of two HIV-1 clade C SOSIP.664 trimers that increase the arsenal of native-like Env immunogens
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September 2015 |
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2
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November 2016 |
Fusion peptide of HIV-1 as a site of vulnerability to neutralizing antibody
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May 2016 |
Inference of Macromolecular Assemblies from Crystalline State
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September 2007 |
Capturing the inherent structural dynamics of the HIV-1 envelope glycoprotein fusion peptide
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February 2019 |
Molecular Characterization of Five Neutralizing Anti-HIV Type 1 Antibodies: Identification of Nonconventional D Segments in the Human Monoclonal Antibodies 2G12 and 2F5
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September 1998 |
Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer
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March 2016 |
Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB
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December 2004 |
Cryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer
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October 2013 |
Phaser crystallographic software
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July 2007 |
The expanding array of HIV broadly neutralizing antibodies
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October 2018 |
Holes in the Glycan Shield of the Native HIV Envelope Are a Target of Trimer-Elicited Neutralizing Antibodies
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August 2016 |
UCSF Chimera?A visualization system for exploratory research and analysis
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January 2004 |
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
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February 2017 |
Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design
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June 2018 |
Solid-State NMR Spectroscopy of the HIV gp41 Membrane Fusion Protein Supports Intermolecular Antiparallel β Sheet Fusion Peptide Structure in the Final Six-Helix Bundle State
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March 2014 |
A Next-Generation Cleaved, Soluble HIV-1 Env Trimer, BG505 SOSIP.664 gp140, Expresses Multiple Epitopes for Broadly Neutralizing but Not Non-Neutralizing Antibodies
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September 2013 |
HIV-1 neutralizing antibodies induced by native-like envelope trimers
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June 2015 |
Structure of a cleavage-independent HIV Env recapitulates the glycoprotein architecture of the native cleaved trimer
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May 2018 |
Antibody 8ANC195 Reveals a Site of Broad Vulnerability on the HIV-1 Envelope Spike
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May 2014 |
Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 Binding
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July 2011 |
Cleavage-Independent HIV-1 Env Trimers Engineered as Soluble Native Spike Mimetics for Vaccine Design
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April 2015 |
Recent progress in broadly neutralizing antibodies to HIV
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October 2018 |
The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies
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November 2013 |
Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B, and G
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May 2016 |
Automated molecular microscopy: The new Leginon system
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July 2005 |
An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability
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November 2016 |
DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy
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May 2009 |
Broad neutralization coverage of HIV by multiple highly potent antibodies
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September 2011 |
The HIV-1 envelope glycoprotein structure: nailing down a moving target
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January 2017 |
Structure and Recognition of a Novel HIV-1 gp120-gp41 Interface Antibody that Caused MPER Exposure through Viral Escape
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January 2017 |
Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 Å resolution
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January 1981 |
xia2 : an expert system for macromolecular crystallography data reduction
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December 2009 |
An Analysis of the Sequences of the Variable Regions of Bence Jones Proteins and Myeloma Light Chains and Their Implications for Antibody Complementarity
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August 1970 |
Rational Design of Envelope Identifies Broadly Neutralizing Human Monoclonal Antibodies to HIV-1
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July 2010 |
Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1
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June 2018 |
Structure-Guided Redesign Improves NFL HIV Env Trimer Integrity and Identifies an Inter-Protomer Disulfide Permitting Post-Expression Cleavage
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July 2018 |
IgBLAST: an immunoglobulin variable domain sequence analysis tool
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May 2013 |
Immunologic Basis for Long HCDR3s in Broadly Neutralizing Antibodies Against HIV-1
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June 2014 |
Gctf: Real-time CTF determination and correction
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January 2016 |
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
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February 2017 |
HIV Entry and Envelope Glycoprotein-mediated Fusion
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October 2012 |
Early development of broadly reactive HIV-1 neutralizing activity in elite neutralizers
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January 2014 |
Coot model-building tools for molecular graphics
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November 2004 |
MolProbity : all-atom structure validation for macromolecular crystallography
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December 2009 |
A Native-Like SOSIP.664 Trimer Based on an HIV-1 Subtype B env Gene
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January 2015 |
Correction: The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies
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December 2013 |