Peatland Acidobacteria with a dissimilatory sulfur metabolism

Hausmann, Bela; Pelikan, Claus; Herbold, Craig W.; Köstlbacher, Stephan; Albertsen, Mads; Eichorst, Stephanie A.; Glavina del Rio, Tijana; Huemer, Martin; Nielsen, Per H.; Rattei, Thomas; Stingl, Ulrich; Tringe, Susannah G.; Trojan, Daniela; Wentrup, Cecilia; Woebken, Dagmar; Pester, Michael; Loy, Alexander

doi:10.1038/s41396-018-0077-1

Peatland Acidobacteria with a dissimilatory sulfur metabolism

Journal Article · Thu Feb 22 23:00:00 EST 2018 · The ISME Journal

DOI:https://doi.org/10.1038/s41396-018-0077-1· OSTI ID:1543737

^[1]; Pelikan, Claus ^[2]; Herbold, Craig W. ^[2]; Köstlbacher, Stephan ^[2]; ^[3]; Eichorst, Stephanie A. ^[2]; Glavina del Rio, Tijana ^[4]; Huemer, Martin ^[2]; ^[3]; ^[2]; ^[5]; ^[4]; Trojan, Daniela ^[2]; Wentrup, Cecilia ^[2]; Woebken, Dagmar ^[2]; Pester, Michael ^[6]; ^[2]

Univ. of Vienna, Vienna (Austria); Univ. of Konstanz, Konstanz (Germany)
Univ. of Vienna, Vienna (Austria)
Aalborg Univ., Aalborg (Denmark)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Univ. of Florida, Davie, FL (United States)
Univ. of Konstanz, Konstanz (Germany); Leibniz Inst. DSMZ, Braunschweig (Germany)

Sulfur-cycling microorganisms impact organic matter decomposition in wetlands and consequently greenhouse gas emissions from these globally relevant environments. However, their identities and physiological properties are largely unknown. By applying a functional metagenomics approach to an acidic peatland, we recovered draft genomes of seven novel Acidobacteria species with the potential for dissimilatory sulfite (dsrAB, dsrC, dsrD, dsrN, dsrT, dsrMKJOP) or sulfate respiration (sat, aprBA, qmoABC plus dsr genes). Surprisingly, the genomes also encoded DsrL, which so far was only found in sulfur-oxidizing microorganisms. Metatranscriptome analysis demonstrated expression of acidobacterial sulfur-metabolism genes in native peat soil and their upregulation in diverse anoxic microcosms. This indicated an active sulfate respiration pathway, which, however, might also operate in reverse for dissimilatory sulfur oxidation or disproportionation as proposed for the sulfur-oxidizing Desulfurivibrio alkaliphilus. Acidobacteria that only harbored genes for sulfite reduction additionally encoded enzymes that liberate sulfite from organosulfonates, which suggested organic sulfur compounds as complementary energy sources. Further metabolic potentials included polysaccharide hydrolysis and sugar utilization, aerobic respiration, several fermentative capabilities, and hydrogen oxidation. Our findings extend both, the known physiological and genetic properties of Acidobacteria and the known taxonomic diversity of microorganisms with a DsrAB-based sulfur metabolism, and highlight new fundamental niches for facultative anaerobic Acidobacteria in wetlands based on exploitation of inorganic and organic sulfur molecules for energy conservation.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC); Univ. of California, Oakland, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23), Biological Systems Science Division (SC-23.2 )

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1543737

Alternate ID(s):: OSTI ID: 1646840

Journal Information:: The ISME Journal, Journal Name: The ISME Journal Journal Issue: 7 Vol. 12; ISSN 1751-7362

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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Novel Genes of the dsr Gene Cluster and Evidence for Close Interaction of Dsr Proteins during Sulfur Oxidation in the Phototrophic Sulfur Bacterium Allochromatium vinosum Dahl, C.; Engels, S.; Pott-Sperling, A. S. Journal of Bacteriology, Vol. 187, Issue 4 https://doi.org/10.1128/JB.187.4.1392-1404.2005	journal	February 2005
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