A Fast and Scalable Method for A-Optimal Design of Experiments for Infinite-dimensional Bayesian Nonlinear Inverse Problems
January 2016
A Nonlinear Variational Problem for Image Matching
January 1994
Simultaneous optical flow and source estimation: Space–time discretization and preconditioning
October 2015
Minimizing Flows for the Monge--Kantorovich Problem
January 2003
Optical tomography in medical imaging
January 1999
Optical tomography: forward and inverse problems
December 2009
A fast diffeomorphic image registration algorithm
October 2007
Diffeomorphic registration using geodesic shooting and Gauss–Newton optimisation
April 2011
Incorporation of diffusion-weighted magnetic resonance imaging data into a simple mathematical model of tumor growth
December 2011
Lagrangian frame diffeomorphic image registration: Morphometric comparison of human and chimpanzee cortex
June 2006
Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain
February 2008
A reproducible evaluation of ANTs similarity metric performance in brain image registration
February 2011
Biomechanical Dynamics of the Heart with MRI
August 2002
An optimal control approach to the optical flow problem
January 2016
Optimal boundary control of a system of reaction diffusion equations
November 2010
Computing Large Deformation Metric Mappings via Geodesic Flows of Diffeomorphisms
February 2005
On the Foundations of Cancer Modelling: Selected Topics, Speculations, and Perspectives
April 2008
A computational fluid mechanics solution to the Monge-Kantorovich mass transfer problem
January 2000
Numerical solution of saddle point problems
April 2005
Multilevel Algorithms for Large-Scale Interior Point Methods
January 2010
A preconditioning technique for a class of PDE-constrained optimization problems
July 2011
Parallel Newton-Krylov methods for PDE-constrained optimization
January 1999
Parallel Lagrange--Newton--Krylov--Schur Methods for PDE-Constrained Optimization. Part I: The Krylov--Schur Solver
January 2005
Parallel Lagrange--Newton--Krylov--Schur Methods for PDE-Constrained Optimization. Part II: The Lagrange--Newton Solver and Its Application to Optimal Control of Steady Viscous Flows
January 2005
Myocardial Deformation Recovery Using a 3D Biventricular Incompressible Model
January 2006
MR Imaging of Arrhythmogenic Right Ventricular Cardiomyopathy: Morphologic Findings and Interobserver Reliability
January 2003
Optimal Control Formulation for Determining Optical Flow
January 2003
A Hyperelastic Regularization Energy for Image Registration
January 2013
Regional Myocardial Function: Advances in MR Imaging and Analysis
October 2003
Image Sequence Interpolation Using Optimal Control
March 2011
Kidney Tumor Growth Prediction by Coupling Reaction–Diffusion and Biomechanical Model
January 2013
3D brain mapping using a deformable neuroanatomy
March 1994
Deformable templates using large deformation kinematics
January 1996
Introduction to the Non-rigid Image Registration Evaluation Project (NIREP)
January 2006
CLARITY for mapping the nervous system
June 2013
Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation
October 2005
An inverse problem for the recovery of the vascularization of a tumor
January 2014
Bayesian Calibration, Validation and Uncertainty Quantification for Predictive Modelling of Tumour Growth: A Tutorial
March 2017
Parameter identification problems in the modelling of cell motility
September 2014
On the communication complexity of 3D FFTs and its implications for Exascale
January 2012
Personalization of Cardiac Motion and Contractility From Images Using Variational Data Assimilation
January 2012
Truncated-newtono algorithms for large-scale unconstrained optimization
June 1983
Second-Order Runge--Kutta Approximations in Control Constrained Optimal Control
January 2000
Variational problems on flows of diffeomorphisms for image matching
January 1998
Choosing the Forcing Terms in an Inexact Newton Method
January 1996
Medical image processing on the GPU – Past, present and future
December 2013
Efficient methods for implementation of multi-level nonrigid mass-preserving image registration on GPUs and multi-threaded CPUs
April 2016
Convergence Analysis for a Class of High-Order Semi-Lagrangian Advection Schemes
June 1998
Physiologic Parameter Estimation Using Inverse Problems
January 2013
Image-Driven Parameter Estimation in Absorption-Diffusion Models of Chromoscopy
January 2011
Ill-posed medicine—an introduction to image registration
May 2008
A survey of medical image registration on graphics hardware
December 2011
Geophysical Imaging of Fluid Flow in Porous Media
January 2014
On markov chain monte carlo methods for nonlinear and non-gaussian state-space models
January 1999
Note on the Sampling Distribution for the Metropolis-Hastings Algorithm
January 2003
An inverse problem formulation for parameter estimation of a reaction–diffusion model of low grade gliomas
May 2015
A framework for scalable biophysics-based image analysis
January 2017
Linear and Nonlinear Elastic Modulus Imaging: An Application to Breast Cancer Diagnosis
August 2012
Achieving logarithmic growth of temporal and spatial complexity in reverse automatic differentiation
January 1992
Implementation and evaluation of various demons deformable image registration algorithms on a GPU
December 2009
Applying a patient-specific bio-mathematical model of glioma growth to develop virtual [18F]-FMISO-PET images
May 2011
Preconditioned all-at-once methods for large, sparse parameter estimation problems
November 2001
A Multilevel Method for the Solution of Time Dependent Optimal Transport
February 2015
A Multilevel Method for Image Registration
January 2006
On optimization techniques for solving nonlinear inverse problems
October 2000
Runge-Kutta methods in optimal control and the transformed adjoint system
December 2000
Analysis of Discrete Ill-Posed Problems by Means of the L-Curve
December 1992
The Evolution of Mathematical Modeling of Glioma Proliferation and Invasion
January 2007
An optimal control approach for deformable registration
No authors listed
2009 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops
https://doi.org/10.1109/CVPRW.2009.5204344
June 2009
Bayesian calibration, validation, and uncertainty quantification of diffuse interface models of tumor growth
October 2012
A time-domain decomposition iterative method for the solution of distributed linear quadratic optimal control problems
January 2005
Registration of Anatomical Images Using Paths of Diffeomorphisms Parameterized with Stationary Vector Field Flows
February 2009
An image-driven parameter estimation problem for a reaction–diffusion glioma growth model with mass effects
November 2007
Determining optical flow
August 1981
In vivo strain and stress estimation of the heart left and right ventricles from MRI images
December 2003
Patient-Specific Mathematical Neuro-Oncology: Using a Simple Proliferation and Invasion Tumor Model to Inform Clinical Practice
March 2015
Adaptive finite element based tomography for fluorescence optical imaging in tissue
January 2004
Line Search Multilevel Optimization as Computational Methods for Dense Optical Flow
January 2011
elastix: A Toolbox for Intensity-Based Medical Image Registration
January 2010
Adjoint method for a tumor growth PDE-constrained optimization problem
October 2013
A mathematical method for parameter estimation in a tumor growth model
July 2015
Extrapolating glioma invasion margin in brain magnetic resonance images: Suggesting new irradiation margins
April 2010
Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations
January 2010
Bayesian Personalization of Brain Tumor Growth Model
January 2015
Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model
March 2017
An Optimal Control Formulation of an Image Registration Problem
October 2009
Analysis of Finite Element Discretizations of an Optimal Control Formulation of the Image Registration Problem
January 2011
A hybrid ten-species phase-field model of tumor growth
September 2014
Selection, calibration, and validation of models of tumor growth
October 2016
Selection and validation of predictive models of radiation effects on tumor growth based on noninvasive imaging data
December 2017
Patient specific tumor growth prediction using multimodal images
April 2014
Accelerating Neuroimage Registration through Parallel Computation of Similarity Metric
September 2015
An Inexact Newton--Krylov Algorithm for Constrained Diffeomorphic Image Registration
January 2015
Constrained $H^1$-Regularization Schemes for Diffeomorphic Image Registration
January 2016
A Semi-Lagrangian Two-Level Preconditioned Newton--Krylov Solver for Constrained Diffeomorphic Image Registration
January 2017
A Lagrangian Gauss--Newton--Krylov Solver for Mass- and Intensity-Preserving Diffeomorphic Image Registration
January 2017
Cyclic Numerical Time Integration in Variational Non-Rigid Image Registration based on Quadratic Regularisation
January 2012
Biophysical modeling of brain tumor progression: From unconditionally stable explicit time integration to an inverse problem with parabolic PDE constraints for model calibration: Stable explicit time integration and PDE constrained optimization
June 2012
A Stochastic Newton MCMC Method for Large-Scale Statistical Inverse Problems with Application to Seismic Inversion
January 2012
The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)
October 2015
A Generative Approach for Image-Based Modeling of Tumor Growth
January 2011
Prediction of Lung Tumor Evolution During Radiotherapy in Individual Patients With PET
April 2014
Computational anatomy: shape, growth, and atrophy comparison via diffeomorphisms
January 2004
Geodesic Shooting for Computational Anatomy
January 2006
Fast free-form deformation using graphics processing units
June 2010
Finite Element Modeling of Brain Tumor Mass-Effect from 3D Medical Images
January 2005
Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template
April 2008
Tumor invasion margin on the Riemannian space of brain fibers
February 2012
Fast Deformable Registration on the GPU: A CUDA Implementation of Demons
No authors listed
2008 International Conference on Computational Science and Its Applications (ICCSA), 2008 International Conference on Computational Sciences and Its Applications
https://doi.org/10.1109/ICCSA.2008.22
June 2008
Solution of inverse problems in elasticity imaging using the adjoint method
February 2003
Selection and Assessment of Phenomenological Models of Tumor Growth
April 2013
Elastography: Ultrasonic estimation and imaging of the elastic properties of tissues
March 1999
DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting
August 2011
Estimation of 3D left ventricular deformation from echocardiography
March 2001
Estimation of 3-D left ventricular deformation from medical images using biomechanical models
July 2002
Fast Iterative Solution of Reaction-Diffusion Control Problems Arising from Chemical Processes
January 2013
Construction of a 4D Statistical Atlas of the Cardiac Anatomy and Its Use in Classification
January 2005
Spatio-temporal free-form registration of cardiac MR image sequences
October 2005
A Computational Framework for Infinite-Dimensional Bayesian Inverse Problems, Part II: Stochastic Newton MCMC with Application to Ice Sheet Flow Inverse Problems
January 2014
Mathematical modeling of brain tumors: effects of radiotherapy and chemotherapy
May 2007
A fully coupled space–time multiscale modeling framework for predicting tumor growth
June 2017
Tumor growth parameters estimation and source localization from a unique time point: Application to low-grade gliomas
March 2013
Frequency Domain Optical Tomography Based on the Equation of Radiative Transfer
January 2006
Predicting the efficacy of radiotherapy in individual glioblastoma patients in vivo: a mathematical modeling approach
May 2010
Mathematical Models of Avascular Tumor Growth
January 2007
A matrix-free approach to efficient affine-linear image registration on CPU and GPU
April 2016
Optical Stokes flow estimation: an imaging-based control approach
November 2006
A gradient-based method for quantitative photoacoustic tomography using the radiative transfer equation
June 2013
Modelling of glioblastoma growth by linking a molecular interaction network with an agent-based model
October 2013
An electromechanical model of the heart for image analysis and simulation
May 2006
Cardiac function estimation from MRI using a heart model and data assimilation: Advances and difficulties
August 2006
Technology Insight: MRI of the myocardium
November 2005
Parallel computation of mutual information on the GPU with application to real-time registration of 3D medical images
August 2010
A Survey of Medical Image Registration on Multicore and the GPU
March 2010
Consistent Estimation of Cardiac Motions by 4D Image Registration
January 2005
Parallel scalable PDE-constrained optimization: antenna identification in hyperthermia cancer treatment planning
May 2009
Reduced order solution of structured linear systems arising in certain PDE-constrained optimization problems
February 2012
Deformable Medical Image Registration: A Survey
July 2013
Introduction to Uncertainty Quantification
January 2015
A quantitative model for differential motility of gliomas in grey and white matter
October 2000
Virtual brain tumours (gliomas) enhance the reality of medical imaging and highlight inadequacies of current therapy
January 2002
A mathematical modelling tool for predicting survival of individual patients following resection of glioblastoma: a proof of principle
December 2007
Inverse Problem Theory and Methods for Model Parameter Estimation
January 2005
A Novel Method for Simulating the Extracellular Matrix in Models of Tumour Growth
January 2012
Advanced CLARITY for rapid and high-resolution imaging of intact tissues
June 2014
Estimation of Myocardial Strain and Contraction Phase From Cine MRI Using Variational Data Assimilation
February 2016
3D nonrigid registration via optimal mass transport on the GPU
December 2009
Multi-GPU acceleration of DARTEL (early detection of Alzheimer)
September 2014
Diffeomorphic demons: Efficient non-parametric image registration
March 2009
Diffeomorphic 3D Image Registration via Geodesic Shooting Using an Efficient Adjoint Calculation
August 2011
Computational modeling of brain tumors: discrete, continuum or hybrid?
April 2008
Three-dimensional image-based mechanical modeling for predicting the response of breast cancer to neoadjuvant therapy
February 2017
Discretely Exact Derivatives for Hyperbolic PDE-Constrained Optimization Problems Discretized by the Discontinuous Galerkin Method
August 2014
Pancreatic Tumor Growth Prediction with Multiplicative Growth and Image-Derived Motion
January 2015
Pancreatic Tumor Growth Prediction With Elastic-Growth Decomposition, Image-Derived Motion, and FDM-FEM Coupling
January 2017
Jacobi fields in groups of diffeomorphisms and applications
January 2007
A Comparative Study of Biomechanical Simulators in Deformable Registration of Brain Tumor Images
March 2008
Non-diffeomorphic registration of brain tumor images by simulating tissue loss and tumor growth
July 2009
Bayesian principal geodesic analysis for estimating intrinsic diffeomorphic image variability
October 2015