Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

Sasse, Joelle; Martinoia, Enrico; Northen, Trent

doi:10.1016/j.tplants.2017.09.003

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

Journal Article · Tue Oct 17 00:00:00 EDT 2017 · Trends in Plant Science

DOI:https://doi.org/10.1016/j.tplants.2017.09.003· OSTI ID:1532289

Sasse, Joelle ^[1]; Martinoia, Enrico ^[2]; Northen, Trent ^[3]

Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Univ. of Zurich (Switzerland)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)

Plant health in natural environments depends on interactions with complex and dynamic communities comprising macro- and microorganisms. While many studies have provided insights into the composition of rhizosphere microbiomes (rhizobiomes), little is known about whether plants shape their rhizobiomes. In this work, we discuss physiological factors of plants that may govern plant–microbe interactions, focusing on root physiology and the role of root exudates. Given that only a few plant transport proteins are known to be involved in root metabolite export, we suggest novel families putatively involved in this process. Finally, building off of the features discussed in this review, and in analogy to well-known symbioses, we elaborate on a possible sequence of events governing rhizobiome assembly. Recent advances in sequencing technology have been enabling high-throughput characterization of highly complex plant-associated microbial communities, which are relevant for plant health. Metagenomic approaches have been identifying the metabolic potential of microbes, and are starting to reveal functional groups of microbes, reducing the overall complexity of rhizobiomes. Metabolomic studies are uncovering differential root exudation in various environments and plant developmental stages, as well as consumption of specific exometabolites by microbes. Genome-wide association studies and other comparative genomic approaches have been revealing a link between plant genetic factors, exudation profiles, and microbiome compositions. Finally, molecular studies have been characterizing plant transport proteins necessary for interactions with specific microbes, although the transport of most nutrients and signaling molecules remains unexplored.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1532289

Journal Information:: Trends in Plant Science, Journal Name: Trends in Plant Science Journal Issue: 1 Vol. 23; ISSN 1360-1385

Publisher:: Cell PressCopyright Statement

Country of Publication:: United States

Language:: English

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Additional file 1 of Host genetic variation drives the differentiation in the ecological role of the native Miscanthus root-associated microbiome Ji, Niuniu; Liang, Di; Clark, Lindsay V. figshare https://doi.org/10.6084/m9.figshare.24225193	dataset	January 2023
Additional file 1 of Host genotype-specific rhizosphere fungus enhances drought resistance in wheat Yue, Hong; Sun, Xuming; Wang, Tingting figshare https://doi.org/10.6084/m9.figshare.25333388	dataset	January 2024
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NB-LRRs Not Responding Consecutively to Fusarium oxysporum Proliferation Caused Replant Disease Formation of Rehmannia glutinosa Chen, Aiguo; Gu, Li; Xu, Na International Journal of Molecular Sciences, Vol. 20, Issue 13 https://doi.org/10.3390/ijms20133203	journal	June 2019
Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass Sasse, Joelle; Kant, Josefine; Cole, Benjamin J. ETH Zurich https://doi.org/10.3929/ethz-b-000334593	text	January 2019
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota Hu, Lingfei; Robert, Christelle A. M.; Cadot, Selma Nature Publishing Group https://doi.org/10.5167/uzh-168377	text	January 2018
Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots Banerjee, Samiran; Walder, Florian; Büchi, Lucie Nature Publishing Group https://doi.org/10.5167/uzh-182854	text	January 2019

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