Genome Sequences of Six Cluster N Mycobacteriophages, Kevin1, Nenae, Parmesanjohn, ShrimpFriedEgg, Smurph, and SpongeBob, Isolated on Mycobacterium smegmatis mc 2 155

Caratenuto, Russell A.; Ciabattoni, Grace O.; DesGranges, Nicolas J.; Drost, Cassidy L.; Gao, Longhui; Gipson, Brianna; Kahler, Nicholas C.; Kirven, Nicole A.; Melehani, Julia C.; Patel, Krishna; Rokes, Alecia B.; Seth, Ryan A.; West, Matthew C.; Alhout, Alexa A.; Akoto, Francis F.; Capogna, Nicole; Cudkevich, Netta; Graham, Lee H.; Grapel, Matthew S.; Haleem, Maaz M.; Korenberg, Jamie B.; Lichak, Brooke P.; McKinley, Lauren N.; Mendello, Kourtney R.; Murphy, Caitlin E.; Pyfer, Lauren M.; Ramirez, Wascar A.; Reisner, Julia R.; Swope, Rachel H.; Thoonkuzhy, Matthew J.; Vargas, Lauren A.; Veliz, Croldy A.; Volpe, Katherine R.; Zhang, Kevin D.; Faltine-Gonzalez, Dylan Z.; Zuilkoski, Caitlin M.; Mageeney, Catherine M.; Mohammed, Hamidu T.; Kenna, Margaret A.; Ware, Vassie C.; Dennehy, John J.

doi:10.1128/MRA.00399-19

Genome Sequences of Six Cluster N Mycobacteriophages, Kevin1, Nenae, Parmesanjohn, ShrimpFriedEgg, Smurph, and SpongeBob, Isolated on Mycobacterium smegmatis mc ² 155

Journal Article · Thu May 30 00:00:00 EDT 2019 · Microbiology Resource Announcements

DOI:https://doi.org/10.1128/MRA.00399-19· OSTI ID:1526230

Caratenuto, Russell A. ^[1]; Ciabattoni, Grace O. ^[1]; DesGranges, Nicolas J. ^[1]; Drost, Cassidy L. ^[1]; Gao, Longhui ^[1]; Gipson, Brianna ^[1]; Kahler, Nicholas C. ^[1]; Kirven, Nicole A. ^[1]; Melehani, Julia C. ^[1]; Patel, Krishna ^[1]; Rokes, Alecia B. ^[1]; Seth, Ryan A. ^[1]; West, Matthew C. ^[1]; Alhout, Alexa A. ^[1]; Akoto, Francis F. ^[1]; Capogna, Nicole ^[1]; Cudkevich, Netta ^[1]; Graham, Lee H. ^[1]; Grapel, Matthew S. ^[1]; Haleem, Maaz M. ^[1] more »

Lehigh Univ., Bethlehem, PA (United States)

The annotation of six cluster N Mycobacterium smegmatisphages (Kevin1, Nenae, Parmesanjohn, ShrimpFriedEgg, Smurph, and SpongeBob) reveals regions of genomic diversity, particularly within the central region of the genome. The genome of Kevin1 includes two orphams (genes with no similarity to other phage genes), with one predicted to encode an AAA-ATPase.

Research Organization:: Sandia National Laboratories (SNL-CA), Livermore, CA (United States)

Sponsoring Organization:: PhD Research, Non-DOE funded

Grant/Contract Number:: AC04-94AL85000

OSTI ID:: 1526230

Report Number(s):: SAND--2019-4181J; 674686

Journal Information:: Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 22 Vol. 8; ISSN 2576-098X

Publisher:: SSPA - American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (10)

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core Zimmermann, Lukas; Stephens, Andrew; Nam, Seung-Zin Journal of Molecular Biology, Vol. 430, Issue 15 https://doi.org/10.1016/j.jmb.2017.12.007	journal	July 2018
Assembly algorithms for next-generation sequencing data Miller, Jason R.; Koren, Sergey; Sutton, Granger Genomics, Vol. 95, Issue 6 https://doi.org/10.1016/j.ygeno.2010.03.001	journal	June 2010
Prophage-mediated defence against viral attack and viral counter-defence Dedrick, Rebekah M.; Jacobs-Sera, Deborah; Bustamante, Carlos A. Guerrero Nature Microbiology, Vol. 2, Issue 3 https://doi.org/10.1038/nmicrobiol.2016.251	journal	January 2017
Identifying bacterial genes and endosymbiont DNA with Glimmer Delcher, Arthur L.; Bratke, Kirsten A.; Powers, Edwin C. Bioinformatics, Vol. 23, Issue 6 https://doi.org/10.1093/bioinformatics/btm009	journal	January 2007
Consed: a graphical editor for next-generation sequencing Gordon, David; Green, Phil Bioinformatics, Vol. 29, Issue 22 https://doi.org/10.1093/bioinformatics/btt515	journal	August 2013
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence Lowe, Todd M.; Eddy, Sean R. Nucleic Acids Research, Vol. 25, Issue 5 https://doi.org/10.1093/nar/25.5.955	journal	March 1997
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences Laslett, Dean; Canback, Bjorn Nucleic Acids Research, Vol. 32, Issue 1, p. 11-16 https://doi.org/10.1093/nar/gkh152	journal	January 2004
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses Besemer, J.; Borodovsky, M. Nucleic Acids Research, Vol. 33, Issue Web Server https://doi.org/10.1093/nar/gki487	journal	July 2005
CDD: NCBI's conserved domain database Marchler-Bauer, Aron; Derbyshire, Myra K.; Gonzales, Noreen R. Nucleic Acids Research, Vol. 43, Issue D1 https://doi.org/10.1093/nar/gku1221	journal	November 2014
Phamerator: a bioinformatic tool for comparative bacteriophage genomics Cresawn, Steven G.; Bogel, Matt; Day, Nathan BMC Bioinformatics, Vol. 12, Issue 1 https://doi.org/10.1186/1471-2105-12-395	journal	October 2011

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