Coupled Mesoscopic and Microscopic Simulation of Stochastic Reaction-Diffusion Processes in Mixed Dimensions
|
journal
|
January 2012 |
Random Walks on Lattices. III. Calculation of First‐Passage Times with Application to Exciton Trapping on Photosynthetic Units
|
journal
|
April 1969 |
A general computational framework for modeling cellular structure and function
|
journal
|
September 1997 |
A convergent reaction-diffusion master equation
|
journal
|
August 2013 |
Stochastic reaction-diffusion kinetics in the microscopic limit
|
journal
|
November 2010 |
Multiscale Reaction-Diffusion Algorithms: PDE-Assisted Brownian Dynamics
|
journal
|
January 2013 |
A hybrid continuous-discrete method for stochastic reaction–diffusion processes
|
journal
|
September 2016 |
Multiscale reaction-diffusion simulations with Smoldyn: Fig. 1.
|
journal
|
March 2015 |
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist
|
journal
|
December 2016 |
Hybrid approaches for multiple-species stochastic reaction–diffusion models
|
journal
|
October 2015 |
Stochastic modelling of reaction–diffusion processes: algorithms for bimolecular reactions
|
journal
|
August 2009 |
MOLNs: A Cloud Platform for Interactive, Reproducible, and Scalable Spatial Stochastic Computational Experiments in Systems Biology Using PyURDME
|
journal
|
January 2016 |
Lost in presumption: stochastic reactions in spatial models
|
journal
|
December 2012 |
Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
|
journal
|
January 2008 |
Reaction-diffusion master equation in the microscopic limit
|
journal
|
April 2012 |
Green’s-function reaction dynamics: A particle-based approach for simulating biochemical networks in time and space
|
journal
|
December 2005 |
An adaptive algorithm for simulation of stochastic reaction–diffusion processes
|
journal
|
January 2010 |
The pseudo-compartment method for coupling partial differential equation and compartment-based models of diffusion
|
journal
|
May 2015 |
The Role of Type 4 Phosphodiesterases in Generating Microdomains of cAMP: Large Scale Stochastic Simulations
|
journal
|
July 2010 |
The Role of Dimerisation and Nuclear Transport in the Hes1 Gene Regulatory Network
|
journal
|
May 2013 |
Noise-Induced Min Phenotypes in E. coli
|
journal
|
January 2006 |
Flexible single molecule simulation of reaction–diffusion processes
|
journal
|
May 2011 |
Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases
|
journal
|
December 2004 |
URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries
|
journal
|
January 2012 |
Convergence of methods for coupling of microscopic and mesoscopic reaction–diffusion simulations
|
journal
|
May 2015 |
Spatial Stochastic Dynamics Enable Robust Cell Polarization
|
journal
|
July 2013 |
STEPS: efficient simulation of stochastic reaction–diffusion models in realistic morphologies
|
journal
|
January 2012 |
Reaction rates for mesoscopic reaction-diffusion kinetics
|
journal
|
February 2015 |
Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
|
journal
|
August 2004 |
Reaction rates for reaction-diffusion kinetics on unstructured meshes
|
journal
|
February 2017 |
Stochastic reaction-diffusion simulation with MesoRD
|
journal
|
April 2005 |
Reaction rates for a generalized reaction-diffusion master equation
|
journal
|
January 2016 |
The Reaction-Diffusion Master Equation as an Asymptotic Approximation of Diffusion to a Small Target
|
journal
|
January 2009 |
E-CELL: software environment for whole-cell simulation
|
journal
|
January 1999 |
Spatio-temporal correlations can drastically change the response of a MAPK pathway
|
journal
|
January 2010 |
The two-regime method for optimizing stochastic reaction–diffusion simulations
|
journal
|
September 2011 |
Second quantization representation for classical many-particle system
|
journal
|
September 1976 |
Random Walks on Lattices. II
|
journal
|
February 1965 |
ReaDDy - A Software for Particle-Based Reaction-Diffusion Dynamics in Crowded Cellular Environments
|
journal
|
September 2013 |
A diffusional bimolecular propensity function
|
journal
|
October 2009 |
Simulation of Stochastic Reaction-Diffusion Processes on Unstructured Meshes
|
journal
|
January 2009 |
Exact Solution of the Reversible Diffusion-Influenced Reaction for an Isolated Pair in Three Dimensions
|
journal
|
February 1999 |
Diffusion-controlled reaction rates
|
journal
|
August 1949 |
Spatial Stochastic Dynamics Enable Robust Cell Polarization
|
text
|
January 2013 |
Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions
|
text
|
January 2009 |
Multiscale reaction-diffusion algorithms: PDE-assisted Brownian dynamics
|
preprint
|
January 2012 |
A Convergent Reaction-Diffusion Master Equation
|
text
|
January 2012 |
Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations
|
preprint
|
January 2013 |
Reaction rates for a generalized reaction-diffusion master equation
|
text
|
January 2015 |
Hybrid approaches for multiple-species stochastic reaction-diffusion models
|
text
|
January 2015 |
MOLNs: A cloud platform for interactive, reproducible and scalable spatial stochastic computational experiments in systems biology using PyURDME
|
preprint
|
January 2015 |