VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Libin, Pieter J. K.; Deforche, Koen; Abecasis, Ana B.; Theys, Kristof; Hancock, ed., John

doi:10.1093/bioinformatics/bty851

Title: VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Journal Article · Mon Oct 08 00:00:00 EDT 2018 · Bioinformatics

DOI:https://doi.org/10.1093/bioinformatics/bty851· OSTI ID:1512348

;

; Abecasis, Ana B.; Theys, Kristof; Hancock, ed., John

Abstract Summary Virus sequence data are an essential resource for reconstructing spatiotemporal dynamics of viral spread as well as to inform treatment and prevention strategies. However, the potential benefit of these applications critically depends on accurate and correctly annotated alignments of genetically heterogeneous data. VIRULIGN was built for fast codon-correct alignments of large datasets, with standardized and formalized genome annotation and various alignment export formats. Availability and implementation VIRULIGN is freely available at https://github.com/rega-cev/virulign as an open source software project. Supplementary information Supplementary data is available at Bioinformatics online.

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Sponsoring Organization:: USDOE Office of Nuclear Energy (NE), Nuclear Fuel Cycle and Supply Chain

Grant/Contract Number:: GHTM-UID/Multi/04413/2013; PTDC/DTP-EPI/7066/2014

OSTI ID:: 1512348

Journal Information:: Bioinformatics, Journal Name: Bioinformatics Vol. 35 Journal Issue: 10; ISSN 1367-4803

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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Cited by: 26 works

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