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Enhanced xylose fermentation capacity related to an altered glucose sensing and repression network in a recombinant Saccharomyces cerevisiae
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November 2013 |
An efficient xylose-fermenting recombinant Saccharomyces cerevisiae strain obtained through adaptive evolution and its global transcription profile
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The DAN1 gene of S. cerevisiae is regulated in parallel with the hypoxic genes, but by a different mechanism
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Understanding the mechanism of glucose-induced relief of Rgt1-mediated repression in yeast
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CK2 phosphorylation of eukaryotic translation initiation factor 5 potentiates cell cycle progression
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Improvement of Xylose Uptake and Ethanol Production in Recombinant Saccharomyces cerevisiae through an Inverse Metabolic Engineering Approach
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December 2005 |
Rational and Evolutionary Engineering Approaches Uncover a Small Set of Genetic Changes Efficient for Rapid Xylose Fermentation in Saccharomyces cerevisiae
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February 2013 |
The future of metabolic engineering and synthetic biology: Towards a systematic practice
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May 2012 |
Genome-Wide Transcriptional Analysis of Aerobic and Anaerobic Chemostat Cultures of Saccharomyces cerevisiae
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December 1999 |
Combinatorial genetic perturbation to refine metabolic circuits for producing biofuels and biochemicals
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The One Hour Yeast Proteome
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Synthetic Biology: Advancing the Design of Diverse Genetic Systems
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Role in anaerobiosis of the isoenzymes forSaccharomyces cerevisiae fumarate reductase encoded byOSM1 andFRDS1
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The yeast A kinases differentially regulate iron uptake and respiratory function
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A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Whole Genome, Whole Population Sequencing Reveals That Loss of Signaling Networks Is the Major Adaptive Strategy in a Constant Environment
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iAID: an improved auxin-inducible degron system for the construction of a ‘tight’ conditional mutant in the budding yeast Saccharomyces cerevisiae : Improved auxin-inducible degron in
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The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update
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Functional analyses of PAU genes in Saccharomyces cerevisiae
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Transcriptome changes in adaptive evolution of xylose-fermenting industrial Saccharomyces cerevisiae strains with δ-integration of different xylA genes
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September 2017 |
Hxk2 Regulates the Phosphorylation State of Mig1 and Therefore Its Nucleocytoplasmic Distribution
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Glucose regulates transcription in yeast through a network of signaling pathways
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An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
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Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast
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September 2016 |
The Genetic Landscape of a Cell
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An expanded tool kit for the auxin-inducible degron system in budding yeast: A tool kit for the AID system
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Exploring xylose metabolism in Spathaspora species: XYL1.2 from Spathaspora passalidarum as the key for efficient anaerobic xylose fermentation in metabolic engineered Saccharomyces cerevisiae
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August 2016 |
Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response
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May 2018 |
Interacting proteins of protein kinase A regulatory subunit in Saccharomyces cerevisiae
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September 2014 |
Pathway connectivity and signaling coordination in the yeast stress‐activated signaling network
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November 2014 |
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
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November 2008 |
Bacterial xylose isomerases from the mammal gut Bacteroidetes cluster function in Saccharomyces cerevisiae for effective xylose fermentation
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May 2015 |
Combining evidence using p-values: application to sequence homology searches
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February 1998 |
Production of 3-hydroxypropionic acid from glucose and xylose by metabolically engineered Saccharomyces cerevisiae
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December 2015 |
Model-based transcriptome engineering promotes a fermentative transcriptional state in yeast
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November 2016 |
Molecular Specificity, Convergence and Constraint Shape Adaptive Evolution in Nutrient-Poor Environments
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Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
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April 2011 |
Analysis of the Yeast Kinome Reveals a Network of Regulated Protein Localization during Filamentous Growth
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Hyperphosphorylation of Msn2p and Msn4p in response to heat shock and the diauxic shift is inhibited by cAMP in Saccharomyces cerevisiae
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September 2000 |
Cyclin-Dependent Kinase Co-Ordinates Carbohydrate Metabolism and Cell Cycle in S. cerevisiae
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Rewiring yeast sugar transporter preference through modifying a conserved protein motif
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December 2013 |
The Yeast Cyclin-Dependent Kinase Routes Carbon Fluxes to Fuel Cell Cycle Progression
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May 2016 |
mTORC1 and CK2 coordinate ternary and eIF4F complex assembly
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Rewriting yeast central carbon metabolism for industrial isoprenoid production
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September 2016 |
Phosphorylation of the S. cerevisiae Cdc25 in response to glucose results in its dissociation from Ras
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December 1992 |
Xylose isomerase overexpression along with engineering of the pentose phosphate pathway and evolutionary engineering enable rapid xylose utilization and ethanol production by Saccharomyces cerevisiae
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Life in the midst of scarcity: adaptations to nutrient availability in Saccharomyces cerevisiae
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January 2010 |
MGA2 Is Involved in the Low-Oxygen Response Element-Dependent Hypoxic Induction of Genes in Saccharomyces cerevisiae
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September 2001 |
Saccharomyces cerevisiae PAU genes are induced by anaerobiosis: Anaerobic regulation of PAU genes
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March 2000 |
Systems-Level Engineering of Nonfermentative Metabolism in Yeast
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June 2009 |
A role for Saccharomyces cerevisiae histone H2A in DNA repair
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December 2000 |
Kinetic modelling reveals current limitations in the production of ethanol from xylose by recombinant Saccharomyces cerevisiae
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September 2011 |
ADP/ATP translocator is essential only for anaerobic growth of yeast Saccharomyces cerevisiae
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Reciprocal Regulation of Anaerobic and Aerobic Cell Wall Mannoprotein Gene Expression in Saccharomyces cerevisiae
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Deletion of PHO13 , Encoding Haloacid Dehalogenase Type IIA Phosphatase, Results in Upregulation of the Pentose Phosphate Pathway in Saccharomyces cerevisiae
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December 2014 |
Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research
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April 2016 |
Local protein kinase A action proceeds through intact holoenzymes
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June 2017 |
Construction of efficient xylose-fermenting Saccharomyces cerevisiae through a synthetic isozyme system of xylose reductase from Scheffersomyces stipitis
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October 2017 |
High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae
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July 2012 |
Novel sensing mechanisms and targets for the cAMP-protein kinase A pathway in the yeast Saccharomyces cerevisiae
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The glucose signaling network in yeast
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November 2013 |
Cyclic AMP-Protein Kinase A and Snf1 Signaling Mechanisms Underlie the Superior Potency of Sucrose for Induction of Filamentation in Saccharomyces cerevisiae
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September 2007 |
Autophosphorylation−Inactivation Site of Hexokinase 2 in Saccharomyces cerevisiae †
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Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism
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November 2013 |
A quantitative literature-curated gold standard for kinase-substrate pairs
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January 2011 |
Synergistic effects of TAL1 over-expression and PHO13 deletion on the weak acid inhibition of xylose fermentation by industrial Saccharomyces cerevisiae strain
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June 2014 |
Yeast genomic expression studies using DNA microarrays
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January 2002 |
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
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The three yeast A kinases have specific signaling functions in pseudohyphal growth
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November 1998 |
Molecular mechanisms controlling the localisation of protein kinase A
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Xylose and xylose/glucose co-fermentation by recombinant Saccharomyces cerevisiae strains expressing individual hexose transporters
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September 2014 |
Roles played by Ras subfamily proteins in the cell and developmental biology of microorganisms
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October 2003 |
Glucose repression can be alleviated by reducing glucose phosphorylation rate in Saccharomyces cerevisiae
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February 2018 |
Feedback regulation of Ras2 guanine nucleotide exchange factor (Ras2-GEF) activity of Cdc25p by Cdc25p phosphorylation in the yeast Saccharomyces cerevisiae
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November 2010 |
Nutritional Control of Growth and Development in Yeast
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September 2012 |
Ras Regulates the Polarity of the Yeast Actin Cytoskeleton through the Stress Response Pathway
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June 2001 |
Unraveling the genetic basis of xylose consumption in engineered Saccharomyces cerevisiae strains
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December 2016 |
Glucose-regulated interaction of a regulatory subunit of protein phosphatase 1 with the Snf1 protein kinase in Saccharomyces cerevisiae
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May 1998 |
Rare Variants in Hypermutable Genes Underlie Common Morphology and Growth Traits in Wild Saccharomyces paradoxus
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August 2013 |
Complete biosynthesis of noscapine and halogenated alkaloids in yeast
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April 2018 |
Translation initiation factor eIF-5A expressed from either of two yeast genes or from human cDNA. Functional identity under aerobic and anaerobic conditions
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July 1993 |
Deletion of FPS1 , Encoding Aquaglyceroporin Fps1p, Improves Xylose Fermentation by Engineered Saccharomyces cerevisiae
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Engineering Redox Cofactor Regeneration for Improved Pentose Fermentation in Saccharomyces cerevisiae
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October 2003 |
Transcription analysis of recombinant industrial and laboratory Saccharomyces cerevisiae strains reveals the molecular basis for fermentation of glucose and xylose
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Hexokinase 2 Is an Intracellular Glucose Sensor of Yeast Cells That Maintains the Structure and Activity of Mig1 Protein Repressor Complex
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Glucose repression in Saccharomyces cerevisiae
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The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast
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Oxygen and haem regulate the synthesis of peroxisomal proteins: catalase A, acyl-CoA oxidase and Pex1p in the yeast Saccharomyces cerevisiae; the regulation of these proteins by oxygen is not mediated by haem
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Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress
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July 2017 |
Eukaryotic Release Factor 1 Phosphorylation by CK2 Protein Kinase Is Dynamic but Has Little Effect on the Efficiency of Translation Termination in Saccharomyces cerevisiae
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August 2006 |
The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE).
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Model-Based Clustering, Discriminant Analysis, and Density Estimation
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Thirty years of the HAP2/3/4/5 complex
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Functional optimization of gene clusters by combinatorial design and assembly
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November 2014 |
The Function and Properties of the Azf1 Transcriptional Regulator Change with Growth Conditions in Saccharomyces cerevisiae
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February 2006 |
Laboratory evolution for forced glucose-xylose co-consumption enables identification of mutations that improve mixed-sugar fermentation by xylose-fermenting Saccharomyces cerevisiae
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May 2018 |
Co-expression of TAL1 and ADH1 in recombinant xylose-fermenting Saccharomyces cerevisiae improves ethanol production from lignocellulosic hydrolysates in the presence of furfural
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Exploring genetic suppression interactions on a global scale
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Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis
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Characterization of Saccharomyces cerevisiae genes encoding subunits of cyclic AMP-dependent protein kinase.
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Metabolic remodeling in frataxin-deficient yeast is mediated by Cth2 and Adr1
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Transcriptional Profiling Identifies Two Members of the ATP-binding Cassette Transporter Superfamily Required for Sterol Uptake in Yeast
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Azf1p is a nuclear-localized zinc-finger protein that is preferentially expressed under non-fermentative growth conditions in Saccharomyces cerevisiae
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Xylose Fermentation by Saccharomyces cerevisiae: Challenges and Prospects
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Evolutionary engineering of mixed-sugar utilization by a xylose-fermenting strain
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Enhanced xylose fermentation and ethanol production by engineered Saccharomyces cerevisiae strain
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Activation State of the Ras2 Protein and Glucose-induced Signaling in Saccharomyces cerevisiae
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Ptc1, a Type 2C Ser/Thr Phosphatase, Inactivates the HOG Pathway by Dephosphorylating the Mitogen-Activated Protein Kinase Hog1
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Regulation of phosphotransferases in glucose- and xylose-fermenting yeasts
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Complex Physiology and Compound Stress Responses during Fermentation of Alkali-Pretreated Corn Stover Hydrolysate by an Escherichia coli Ethanologen
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Improvement of xylose fermentation in respiratory-deficient xylose-fermenting Saccharomyces cerevisiae
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In vivo phosphorylation site of hexokinase 2 in Saccharomyces cerevisiae
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PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae
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AZF1 Is a Glucose-Dependent Positive Regulator of CLN3 Transcription in Saccharomyces cerevisiae
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The N-Terminal Half of Cdc25 Is Essential for Processing Glucose Signaling in Saccharomyces cerevisiae
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Universal and Confident Phosphorylation Site Localization Using phosphoRS
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Engineering Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: Reflections and perspectives
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Engineering and Two-Stage Evolution of a Lignocellulosic Hydrolysate-Tolerant Saccharomyces cerevisiae Strain for Anaerobic Fermentation of Xylose from AFEX Pretreated Corn Stover
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Rapid Depletion of Budding Yeast Proteins via the Fusion of an Auxin‐Inducible Degron (AID)
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Increased Ethanol Productivity in Xylose-Utilizing Saccharomyces cerevisiae via a Randomly Mutagenized Xylose Reductase
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Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell
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Springing into Action: Reg2 Negatively Regulates Snf1 Protein Kinase and Facilitates Recovery from Prolonged Glucose Starvation in Saccharomyces cerevisiae
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Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae
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Feasibility of xylose fermentation by engineered Saccharomyces cerevisiae overexpressing endogenous aldose reductase ( GRE3 ), xylitol dehydrogenase ( XYL2 ), and xylulokinase ( XYL3 ) from Scheffersomyces stipitis
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Large-Scale Analysis of Kinase Signaling in Yeast Pseudohyphal Development Identifies Regulation of Ribonucleoprotein Granules
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