Reconstruction of the Metabolic Potential of Acidophilic Sideroxydans Strains from the Metagenome of an Microaerophilic Enrichment Culture of Acidophilic Iron-Oxidizing Bacteria from a Pilot Plant for the Treatment of Acid Mine Drainage Reveals Metabolic Versatility and Adaptation to Life at Low pH
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December 2016 |
UCHIME improves sensitivity and speed of chimera detection
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June 2011 |
Analysis of immune, microbiota and metabolome maturation in infants in a clinical trial of Lactobacillus paracasei CBA L74-fermented formula
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June 2020 |
Microbial Oxidation of Pyrite Coupled to Nitrate Reduction in Anoxic Groundwater Sediment
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July 2009 |
Natural emissions of methane from geothermal and volcanic sources in Europe
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August 2007 |
Impact of CO2 concentration on autotrophic metabolisms and carbon fate in saline aquifers – A case study
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October 2013 |
Microbial Stimulation and Succession following a Test Well Injection Simulating CO2 Leakage into a Shallow Newark Basin Aquifer
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January 2015 |
PyNAST: a flexible tool for aligning sequences to a template alignment
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November 2009 |
Gene and translation initiation site prediction in metagenomic sequences
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July 2012 |
Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer
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August 2011 |
The effect of Fe-oxidizing bacteria on Fe-silicate mineral dissolution
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October 2001 |
CO2 disposal by means of silicates
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June 1990 |
Monitoring permanent CO2 storage by in situ mineral carbonation using a reactive tracer technique
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January 2014 |
New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph
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June 2015 |
Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer
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March 2016 |
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
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January 2015 |
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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September 1997 |
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
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June 2007 |
Structural mechanism of RuBisCO activation by carbamylation of the active site lysine
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October 2012 |
Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
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July 2012 |
Solving the carbon-dioxide buoyancy challenge: The design and field testing of a dissolved CO2 injection system
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June 2015 |
Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle
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February 2008 |
Methanogenic Hydrocarbon Degradation: Evidence from Field and Laboratory Studies
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January 2016 |
Rapid carbon mineralization for permanent disposal of anthropogenic carbon dioxide emissions
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June 2016 |
Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways
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September 2010 |
Functional microbial diversity explains groundwater chemistry in a pristine aquifer
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January 2013 |
DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences
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November 2011 |
Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth
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April 2015 |
Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria
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October 2014 |
RStudio: A Platform-Independent IDE for R and Sweave: SOFTWARE REVIEW
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October 2011 |
FLASH: fast length adjustment of short reads to improve genome assemblies
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September 2011 |
The geology and water chemistry of the Hellisheidi, SW-Iceland carbon storage site
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January 2013 |
Classification and phylogeny of hydrogenases
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August 2001 |
Microbial community structure and functional properties in permanently and seasonally flooded areas in Poyang Lake
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March 2020 |
Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria
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November 2015 |
A thermodynamic assessment of the potential synthesis of condensed hydrocarbons during cooling and dilution of volcanic gases
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January 2000 |
Search and clustering orders of magnitude faster than BLAST
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August 2010 |
Rapid biotic molecular transformation of fulvic acids in a karst aquifer
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November 2007 |
Microbial characterization of basalt formation waters targeted for geological carbon sequestration
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March 2013 |
Rapid solubility and mineral storage of CO2 in basalt
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January 2014 |
Abundance and diversity of microbial life in ocean crust
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May 2008 |
Expanded microbial genome coverage and improved protein family annotation in the COG database
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November 2014 |
Carbon Storage in Basalt
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April 2014 |
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
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May 2012 |
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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November 2012 |
Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
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September 2010 |
Potential impact of CO2 storage on subsurface microbial ecosystems and implications for groundwater quality
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January 2011 |
Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: Distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site
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February 2006 |
Microbial Stimulation and Succession following a Test Well Injection Simulating CO₂ Leakage into a Shallow Newark Basin Aquifer
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journal
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January 2015 |
ARB: a software environment for sequence data
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journal
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February 2004 |
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
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preprint
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January 2014 |
Desulfotomaculum spp. and related gram-positive sulfate-reducing bacteria in deep subsurface environments
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January 2013 |
The Pfam protein families database: towards a more sustainable future
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December 2015 |
Multidimensional reactive transport modeling of CO2 mineral sequestration in basalts at the Hellisheidi geothermal field, Iceland
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July 2012 |
Diversity of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase Large-Subunit Genes from Groundwater and Aquifer Microorganisms
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June 2003 |
Life in the hydrated suboceanic mantle
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January 2012 |
Geochemistry of Dissolved Organic Matter in a Spatially Highly Resolved Groundwater Petroleum Hydrocarbon Plume Cross-Section
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May 2016 |
Experimental contamination of Minims of fluorescein by Pseudomonas aeruginosa.
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July 1986 |
QIIME allows analysis of high-throughput community sequencing data
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April 2010 |
Diverse uncultivated ultra-small bacterial cells in groundwater
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February 2015 |
Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics
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January 2013 |
Factors Controlling Phosphate Interaction with Iron Oxides
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January 2012 |
A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater: SPE-DOM from seawater
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June 2008 |
rrndb: the Ribosomal RNA Operon Copy Number Database
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January 2001 |
The deleterious effect of secondary phases on olivine carbonation yield: Insight from time-resolved aqueous-fluid sampling and FIB-TEM characterization
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October 2013 |
Gas chemistry, boiling and phase segregation in a geothermal system, Hellisheidi, Iceland
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journal
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January 2014 |
Desulfotomaculum aquiferis sp. nov. and Desulfotomaculum profundi sp. nov., isolated from a deep natural gas storage aquifer
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November 2016 |
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
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October 2003 |
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
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journal
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October 2013 |
Characterization of Melioribacter roseus gen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria , and a proposal of a novel bacterial phylum I gnavibacteriae
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journal
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January 2013 |
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
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January 2011 |
Monitoring of the microbial community composition in deep subsurface saline aquifers during CO2 storage in Ketzin, Germany
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January 2011 |
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
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December 2005 |
Ca-carbonates precipitation and limestone genesis — the microbiogeologist point of view
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July 1999 |
Metal ions in biological catalysis: from enzyme databases to general principles
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July 2008 |
The chemistry and saturation states of subsurface fluids during the in situ mineralisation of CO2 and H2S at the CarbFix site in SW-Iceland
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March 2017 |
The geomicrobiology of CO2 geosequestration: a focused review on prokaryotic community responses to field-scale CO2 injection
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April 2015 |
Using Boreholes as Windows into Groundwater Ecosystems
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July 2013 |
Chapter 6 Microbial Processes in Oil Fields
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book
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February 2009 |
First Investigation of the Microbiology of the Deepest Layer of Ocean Crust
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November 2010 |
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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March 2010 |