The social network of microorganisms — how auxotrophies shape complex communities

Zengler, Karsten; Zaramela, Livia S.

doi:10.1038/s41579-018-0004-5

Title: The social network of microorganisms — how auxotrophies shape complex communities

Journal Article · Thu Mar 29 00:00:00 EDT 2018 · Nature Reviews Microbiology

DOI:https://doi.org/10.1038/s41579-018-0004-5· OSTI ID:1485597

^[1]; Zaramela, Livia S. ^[1]

Univ. of California, San Diego, CA (United States)

Microorganisms engage in complex interactions with other organisms and their environment. Recent studies have shown that these interactions are not limited to the exchange of electron donors. Most microorganisms are auxotrophs, thus relying on external nutrients for growth, including the exchange of amino acids and vitamins. Currently, we lack a deeper understanding of auxotrophies in microorganisms and how nutrient requirements differ between different strains and different environments. In this Opinion article, we describe how the study of auxotrophies and nutrient requirements among members of complex communities will enable new insights into community composition and assembly. Furthermore, understanding this complex network over space and time is crucial for developing strategies to interrogate and shape microbial communities.

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Research Organization:: Johns Hopkins Univ., Baltimore, MD (United States)

Sponsoring Organization:: USDOE Office of Energy Efficiency and Renewable Energy (EERE)

Grant/Contract Number:: SC0012658

OSTI ID:: 1485597

Journal Information:: Nature Reviews Microbiology, Vol. 16, Issue 6; ISSN 1740-1526

Publisher:: Springer NatureCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 196 works

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Uncovering and resolving challenges of quantitative modeling in a simplified community of interacting cells Hart, Samuel F. M.; Mi, Hanbing; Green, Robin PLOS Biology, Vol. 17, Issue 2 https://doi.org/10.1371/journal.pbio.3000135	journal	February 2019
The genetic basis for adaptation of model-designed syntrophic co-cultures Lloyd, Colton J.; King, Zachary A.; Sandberg, Troy E. PLOS Computational Biology, Vol. 15, Issue 3 https://doi.org/10.1371/journal.pcbi.1006213	journal	March 2019
Core Gut Bacteria Analysis of Healthy Mice Wang, Jingjing; Lang, Tao; Shen, Jian Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.00887	journal	April 2019
Bottom-Up Approaches to Synthetic Cooperation in Microbial Communities Rodríguez Amor, Daniel; Dal Bello, Martina Life, Vol. 9, Issue 1 https://doi.org/10.3390/life9010022	journal	February 2019
A riboswitch gives rise to multi-generational phenotypic heterogeneity in an auxotrophic bacterium A., Hernandez-Valdes, Jhonatan; Jordi, van Gestel,; P., Kuipers, Oscar ETH Zurich https://doi.org/10.3929/ethz-b-000405676	text	January 2020
The advantage of leakage of essential metabolites and resultant symbiosis of diverse species Yamagishi, Jumpei F.; Saito, Nen; Kaneko, Kunihiko arXiv https://doi.org/10.48550/arxiv.1811.10172	text	January 2018

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