Genomes OnLine database (GOLD) v.7: updates and new features

Mukherjee, Supratim; Stamatis, Dimitri; Bertsch, Jon; Ovchinnikova, Galina; Katta, Hema Y.; Mojica, Alejandro; Chen, I-Min A.; Kyrpides, Nikos C.; Reddy, TBK

doi:10.1093/nar/gky977

Title: Genomes OnLine database (GOLD) v.7: updates and new features

Journal Article · Wed Oct 24 00:00:00 EDT 2018 · Nucleic Acids Research

DOI:https://doi.org/10.1093/nar/gky977· OSTI ID:1481765

Mukherjee, Supratim ^[1]; Stamatis, Dimitri ^[1]; Bertsch, Jon ^[1]; Ovchinnikova, Galina ^[1]; Katta, Hema Y. ^[1]; Mojica, Alejandro ^[1]; Chen, I-Min A. ^[1]; Kyrpides, Nikos C. ^[1]; Reddy, TBK ^[1]

Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, CA 94598, USA

The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. Currently GOLD hosts information on 33 415 Studies, 49 826 Biosamples, 313 324 Organisms, 215 881 Sequencing Projects and 174 454 Analysis Projects with a total of 541 metadata fields, of which 80 are based on controlled vocabulary (CV) terms. GOLD provides a user-friendly web interface to browse sequencing projects and launch advanced search tools across four classification levels. Users submit metadata on a wide range of Sequencing and Analysis Projects in GOLD before depositing sequence data to the Integrated Microbial Genomes (IMG) system for analysis. GOLD conforms with and supports the rules set by the Genomic Standards Consortium (GSC) Minimum Information standards. The current version of GOLD (v.7) has seen the number of projects and associated metadata increase exponentially over the years. This paper provides an update on the current status of GOLD and highlights the new features added over the last two years.

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Research Organization:: Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

DOE Contract Number:: AC02-05CH11231

OSTI ID:: 1481765

Journal Information:: Nucleic Acids Research, Vol. 2018; ISSN 0305-1048

Publisher:: Oxford University Press

Country of Publication:: United States

Language:: English

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