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DNA Templated Metal Nanoclusters: From Emergent Properties to Unique Applications

Journal Article · · Accounts of Chemical Research
 [1];  [1];  [1];  [2];  [3]
  1. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  2. Univ. of Mississippi, Oxford, MS (United States). Dept. of Chemistry and Biochemistry
  3. Northern Arizona Univ., Flagstaff, AZ (United States). Dept. of Chemistry and Biochemistry
Metal nanoclusters containing a few to several hundred atoms with sizes ranging from sub-nanometer to ~2 nm occupy an intermediate size regime that bridges larger plasmonic nanoparticles and smaller metal complexes. With strong quantum confinement, metal nanoclusters exhibit molecule-like properties. This paper focuses on noble metal nanoclusters that are synthesized within a single stranded DNA template. Compared to other ligand protected metal nanoclusters, DNA-templated metal nanoclusters manifest intriguing physical and chemical properties that are heavily influenced by the design of DNA templates. For example, DNA-templated silver nanoclusters can show bright fluorescence, tunable emission colors, and enhanced stability by tuning the sequence of the encapsulating DNA template. DNA-templated gold nanoclusters can also serve as excellent cocatalysts, which are integratable with other biocatalysts such as enzymes. In this Account, DNA-templated silver and gold nanoclusters are selected as paradigm systems to showcase their emergent properties and unique applications. We first discuss the DNA-templated silver nanoclusters with a focus on the creation of a complementary palette of emission colors, which has potential applications for multiplex assays. The importance of the DNA template toward enhanced stability of silver nanoclusters is also demonstrated. We then introduce a special class of activable fluorescence probes that are based on the fluorescence turn-on phenomena of DNA-templated silver nanoclusters, which are named nanocluster beacons (NCBs). NCBs have distinct advantages over molecular beacons for nucleic acid detection, and their emission mechanisms are also discussed in detail. We then discuss a universal method of creating novel DNA–silver nanocluster aptamers for protein detection with high specificity. The remainder of the Account is devoted to the DNA-templated gold nanoclusters. We demonstrate that DNA–gold nanoclusters can serve as enhancers for enzymatic reduction of oxygen, which is one of the most important reactions in biofuel cells. Although DNA-templated metal nanoclusters are still in their infancy, we anticipate they will emerge as a new type of functional nanomaterial with wide applications in biology and energy science. Future research will focus on the synthesis of size selected DNA–metal nanoclusters with atomic monodispersity, structural determination of different sized DNA–metal nanoclusters, and establishment of structure–property correlations. Some long-standing mysteries, such as the origin of fluorescence and mechanism for emission color tunability, constitute the central questions regarding the photophysical properties of DNA–metal nanoclusters. On the application side, more studies are required to understand the interaction between nanocluster and biological systems. In the foreseeable future, one can expect that new biosensors, catalysts, and functional devices will be invented based on the intriguing properties of well-designed DNA–metal nanoclusters and their composites. Altogether, DNA–metal nanoclusters can add additional spotlights into the highly vibrant field of ligand protected, quantum sized metal nanoclusters.
Research Organization:
Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
LANL Laboratory Directed Research and Development (LDRD) Program; USDOE Office of Science (SC)
Grant/Contract Number:
AC52-06NA25396
OSTI ID:
1480003
Report Number(s):
LA-UR--18-25907
Journal Information:
Accounts of Chemical Research, Journal Name: Accounts of Chemical Research Journal Issue: 11 Vol. 51; ISSN 0001-4842
Publisher:
American Chemical SocietyCopyright Statement
Country of Publication:
United States
Language:
English

References (54)

Sequence-Dependent Fluorescence of DNA-Hosted Silver Nanoclusters journal January 2008
Water-Soluble Fluorescent Silver Nanoclusters journal January 2010
Evidence for Rod-Shaped DNA-Stabilized Silver Nanocluster Emitters journal February 2013
DNA-Mediated Silver Nanoclusters: Synthesis, Properties and Applications journal April 2012
Synthesis of Branched DNA Scaffolded Super-Nanoclusters with Enhanced Antibacterial Performance journal March 2018
Synthesis of DNA-templated fluorescent gold nanoclusters journal May 2012
Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd journal November 1993
Ultra-small fluorescent metal nanoclusters: Synthesis and biological applications journal August 2011
Metal nanoclusters: New fluorescent probes for sensors and bioimaging journal February 2014
DNA-stabilized, fluorescent, metal nanoclusters for biosensor development journal June 2014
Atomically Precise Colloidal Metal Nanoclusters and Nanoparticles: Fundamentals and Opportunities journal September 2016
Atomically Precise Clusters of Noble Metals: Emerging Link between Atoms and Nanoparticles journal June 2017
Tuning the Magic Size of Atomically Precise Gold Nanoclusters via Isomeric Methylbenzenethiols journal April 2015
DNA Materials: Bridging Nanotechnology and Biotechnology journal May 2014
Metal-Directed Protein Self-Assembly journal May 2010
Individual Water-Soluble Dendrimer-Encapsulated Silver Nanodot Fluorescence journal November 2002
DNA-Templated Ag Nanocluster Formation journal April 2004
Ag K-Edge EXAFS Analysis of DNA-Templated Fluorescent Silver Nanoclusters: Insight into the Structural Origins of Emission Tuning by DNA Sequence Variations journal August 2011
A Fluorescence Light-Up Ag Nanocluster Probe That Discriminates Single-Nucleotide Variants by Emission Color journal July 2012
Graphene Oxide/Nucleic-Acid-Stabilized Silver Nanoclusters: Functional Hybrid Materials for Optical Aptamer Sensing and Multiplexed Analysis of Pathogenic DNAs journal July 2013
Oligonucleotide-Stabilized Ag Nanocluster Fluorophores journal April 2008
Protein-Directed Synthesis of Highly Fluorescent Gold Nanoclusters journal January 2009
Highly Sequence-Dependent Formation of Fluorescent Silver Nanoclusters in Hybridized DNA Duplexes for Single Nucleotide Mutation Identification journal January 2010
A Hybrid DNA-Templated Gold Nanocluster For Enhanced Enzymatic Reduction of Oxygen journal September 2015
A Segregated, Partially Oxidized, and Compact Ag 10 Cluster within an Encapsulating DNA Host journal March 2016
Ag Nanocluster Formation Using a Cytosine Oligonucleotide Template journal January 2007
Nanoparticle-Free Synthesis of Fluorescent Gold Nanoclusters at Physiological Temperature journal August 2007
Ligand Effects on the Structure and the Electronic Optical Properties of Anionic Au 25 (SR) 18 Clusters journal September 2013
Formation and Stabilization of Fluorescent Gold Nanoclusters Using Small Molecules journal March 2010
DNA-Templated Molecular Silver Fluorophores journal March 2013
A DNA−Silver Nanocluster Probe That Fluoresces upon Hybridization journal August 2010
A Complementary Palette of NanoCluster Beacons journal October 2014
Ultrastable silver nanoparticles journal September 2013
Ultrafast coherence transfer in DNA-templated silver nanoclusters journal May 2017
Hydrogen-bonded structure and mechanical chiral response of a silver nanoparticle superlattice journal April 2014
Silver nanocluster aptamers: in situ generation of intrinsically fluorescent recognition ligands for protein detection journal January 2011
Developing luminescent silver nanodots for biological applications journal January 2012
Engineering ultrasmall water-soluble gold and silver nanoclusters for biomedical applications journal January 2014
Fluorescent silver nanoclusters stabilized by DNA scaffolds journal January 2014
Metal nanoclusters: novel probes for diagnostic and therapeutic applications journal January 2015
DNA-templated silver nanoclusters: structural correlation and fluorescence modulation journal January 2016
Gold nanocluster formation using morpholino oligomer as template and assembly agent within hybrid bio-nanomaterials journal January 2016
A complementary palette of fluorescent silver nanoclusters journal January 2010
Fluorescent silver nanoclusters journal January 2011
Blue emitting gold nanoclusters templated by poly-cytosine DNA at low pH and poly-adenine DNA at neutral pH journal January 2012
Bright two-photon emission and ultra-fast relaxation dynamics in a DNA-templated nanocluster investigated by ultra-fast spectroscopy journal January 2012
A DNA-templated fluorescent silver nanocluster with enhanced stability journal January 2012
Fluorescent silver nanoclusters as DNA probes journal January 2013
Strongly emissive individual DNA-encapsulated Ag nanoclusters as single-molecule fluorophores journal May 2007
Site-specific targeting of enterovirus capsid by functionalized monodisperse gold nanoclusters journal January 2014
DNA-hosted fluorescent gold nanoclusters: sequence-dependent formation journal December 2012
A Beacon of Light journal June 2011
Programmable materials and the nature of the DNA bond journal February 2015
Emergence of hierarchical structural complexities in nanoparticles and their assembly journal December 2016

Cited By (11)

Metal Nanoclusters Stabilized by Selenol Ligands journal September 2019
DNA-templated copper nanoclusters as a fluorescent probe for fluoride by using aluminum ions as a bridge journal May 2019
Fluorescent silver nanoclusters as antibody label in a competitive immunoassay for the complement factor H journal June 2019
Recent progress in copper nanocluster-based fluorescent probing: a review journal September 2019
Fluorometric determination of microRNA by using target-triggered cascade signal amplification and DNA-templated silver nanoclusters journal September 2019
Fluorometric determination of microRNA using arched probe-mediated isothermal exponential amplification combined with DNA-templated silver nanoclusters journal October 2019
Target-induced in-situ formation of fluorescent DNA-templated copper nanoparticles by a catalytic hairpin assembly: application to the determination of DNA and thrombin journal November 2019
Instant hydrogel formation of terpyridine-based complexes triggered by DNA via non-covalent interaction journal January 2019
Intrinsically fluorescent gold nanoclusters stabilized within a copper storage protein that follow the Irving–Williams trend in metal ion sensing journal January 2019
A cationic [Ag 12 S 12 ] cluster-based 2D coordination polymer and its dye composite with enhanced photocurrent and dielectric responses journal January 2019
Biocompatible gold nanoclusters: synthetic strategies and biomedical prospects journal June 2019

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