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Protein Data Bank: the single global archive for 3D macromolecular structure data

Journal Article · · Nucleic Acids Research
DOI:https://doi.org/10.1093/nar/gky949· OSTI ID:1479119
Not Available
Research Organization:
Rutgers Univ., New Brunswick, NJ (United States)
Sponsoring Organization:
National Institutes of Health (NIH); National Science Foundation (NSF); USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
Contributing Organization:
wwPDB Consortium
Grant/Contract Number:
SC0019749
OSTI ID:
1479119
Alternate ID(s):
OSTI ID: 1600527
Journal Information:
Nucleic Acids Research, Journal Name: Nucleic Acids Research Journal Issue: D1 Vol. 47; ISSN 0305-1048
Publisher:
Oxford University PressCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (39)

The Cambridge Structural Database in Retrospect and Prospect journal January 2014
EMDB Web Resources journal March 2018
The challenge of modeling protein assemblies: the CASP12-CAPRI experiment journal November 2017
Evaluation of the template-based modeling in CASP12 journal December 2017
Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12 journal December 2017
D3R Grand Challenge 2: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies journal December 2017
New electron microscopy database and deposition system journal November 2002
A New Generation of Crystallographic Validation Tools for the Protein Data Bank journal October 2011
Outcome of the First Electron Microscopy Validation Task Force Meeting journal February 2012
Report of the wwPDB Small-Angle Scattering Task Force: Data Requirements for Biomolecular Modeling and the PDB journal June 2013
Recommendations of the wwPDB NMR Validation Task Force journal September 2013
Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop journal July 2015
Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop journal April 2016
OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive journal March 2017
PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models journal September 2017
Validation of Structures in the Protein Data Bank journal December 2017
Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules journal June 2018
Crystallography: Protein Data Bank journal October 1971
EMPIAR: a public archive for raw electron microscopy image data journal March 2016
Announcing the worldwide Protein Data Bank journal December 2003
NMR Exchange Format: a unified and open standard for representation of NMR restraint data journal June 2015
The FAIR Guiding Principles for scientific data management and stewardship journal March 2016
STAR/mmCIF: An ontology for macromolecular structure journal February 2000
PDBML: the representation of archival macromolecular structure data in XML journal October 2004
The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank journal December 2014
Chemical annotation of small and peptide-like molecules at the Protein Data Bank journal January 2013
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data journal January 2018
The Protein Data Bank journal January 2000
Remediation of the protein data bank archive journal December 2007
BioMagResBank journal December 2007
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format journal October 2011
SASBDB, a repository for biological small-angle scattering data journal October 2014
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures journal October 2016
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe journal November 2017
STAR/CIF macromolecular NMR data dictionaries and data file formats journal August 1996
Implementing an X-ray validation pipeline for the Protein Data Bank journal March 2012
A public database of macromolecular diffraction experiments journal October 2016
Validation of ligands in macromolecular structures determined by X-ray crystallography journal March 2018
Collaboration gets the most out of software journal September 2013

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