Liquid crystal phase behavior of a DNA dodecamer and the chromonic dye Sunset Yellow

Theis, Joseph G.; Smith, Gregory P.; Yi, Youngwoo; Walba, David M.; Clark, Noel A.

doi:10.1103/PhysRevE.98.042701

Liquid crystal phase behavior of a DNA dodecamer and the chromonic dye Sunset Yellow

Journal Article · Mon Oct 08 00:00:00 EDT 2018 · Physical Review E

DOI:https://doi.org/10.1103/PhysRevE.98.042701· OSTI ID:1477535

Theis, Joseph G.; Smith, Gregory P.; Yi, Youngwoo; Walba, David M.; Clark, Noel A.

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View Accepted Manuscript (Publisher)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1477535

Journal Information:: Physical Review E, Journal Name: Physical Review E Journal Issue: 4 Vol. 98; ISSN PLEEE8; ISSN 2470-0045

Publisher:: American Physical SocietyCopyright Statement

Country of Publication:: United States

Language:: English

References (17)

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DNA binding studies of Sunset Yellow FCF using spectroscopy, viscometry and electrochemical techniques Asaadi, Sara; Hajian, Reza Journal of Molecular Structure, Vol. 1146 https://doi.org/10.1016/j.molstruc.2017.06.065	journal	October 2017
Molecular Order in a Chromonic Liquid Crystal: A Molecular Simulation Study of the Anionic Azo Dye Sunset Yellow Chami, Fatima; Wilson, Mark R. Journal of the American Chemical Society, Vol. 132, Issue 22 https://doi.org/10.1021/ja102468g	journal	June 2010
Binding Interaction of Cationic Phenazinium Dyes with Calf Thymus DNA: A Comparative Study Sarkar, Deboleena; Das, Paramita; Basak, Soumen The Journal of Physical Chemistry B, Vol. 112, Issue 30 https://doi.org/10.1021/jp801659d	journal	July 2008
Chromonic Liquid Crystal Formation by Edicol Sunset Yellow ^† Edwards, D. J.; Jones, J. W.; Lozman, O. The Journal of Physical Chemistry B, Vol. 112, Issue 46 https://doi.org/10.1021/jp802758m	journal	November 2008
Self-Assembly of Lyotropic Chromonic Liquid Crystal Sunset Yellow and Effects of Ionic Additives Park, Heung-Shik; Kang, Shin-Woong; Tortora, Luana The Journal of Physical Chemistry B, Vol. 112, Issue 51 https://doi.org/10.1021/jp804767z	journal	December 2008
Abiotic ligation of DNA oligomers templated by their liquid crystal ordering Fraccia, Tommaso P.; Smith, Gregory P.; Zanchetta, Giuliano Nature Communications, Vol. 6, Issue 1 https://doi.org/10.1038/ncomms7424	journal	March 2015
Chromonic review Lydon, John Journal of Materials Chemistry, Vol. 20, Issue 45 https://doi.org/10.1039/b926374h	journal	January 2010
Tracing the phase boundaries of hard spherocylinders Bolhuis, Peter; Frenkel, Daan The Journal of Chemical Physics, Vol. 106, Issue 2 https://doi.org/10.1063/1.473404	journal	January 1997
The Chemical Synthesis of DNA/RNA: Our Gift to Science Caruthers, Marvin H. Journal of Biological Chemistry, Vol. 288, Issue 2 https://doi.org/10.1074/jbc.X112.442855	journal	December 2012
Lyotropic Chromonic Liquid Crystals for Biological Sensing Applications Shiyanovskii, S. V.; Lavrentovich, O. D.; Schneider, T. Molecular Crystals and Liquid Crystals, Vol. 434, Issue 1 https://doi.org/10.1080/15421400590957288	journal	June 2005
A clarification of the complex spectrum observed with the ultraviolet circular dichroism of ethidium bromide bound to DNA Parodi, Silvio; Kendall, Frank; Nicolini, Claudio Nucleic Acids Research, Vol. 2, Issue 4 https://doi.org/10.1093/nar/2.4.477	journal	January 1975
Controlling nucleic acid secondary structure by intercalation: effects of DNA strand length on coralyne-driven duplex disproportionation Jain, S. S. Nucleic Acids Research, Vol. 31, Issue 15 https://doi.org/10.1093/nar/gkg648	journal	August 2003
Aggregation behavior and chromonic liquid crystal properties of an anionic monoazo dye Horowitz, Viva R.; Janowitz, Lauren A.; Modic, Aaron L. Physical Review E, Vol. 72, Issue 4 https://doi.org/10.1103/PhysRevE.72.041710	journal	October 2005
Phases and structures of sunset yellow and disodium cromoglycate mixtures in water Yamaguchi, Akihiro; Smith, Gregory P.; Yi, Youngwoo Physical Review E, Vol. 93, Issue 1 https://doi.org/10.1103/PhysRevE.93.012704	journal	January 2016
The Effects of Shape on the Interaction of Colloidal Particles Onsager, Lars Annals of the New York Academy of Sciences, Vol. 51, Issue 4 https://doi.org/10.1111/j.1749-6632.1949.tb27296.x	journal	May 1949
End-to-End Stacking and Liquid Crystal Condensation of 6- to 20-Base Pair DNA Duplexes Nakata, M.; Zanchetta, G.; Chapman, B. D. Science, Vol. 318, Issue 5854 https://doi.org/10.1126/science.1143826	journal	November 2007

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