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January 2004 |
Silencing SlAGL6, a tomato AGAMOUS-LIKE6 lineage gene, generates fused sepal and green petal
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March 2017 |
Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings : UV-B-flg22 crosstalk is functional in planta
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December 2016 |
ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network
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December 2013 |
DNA co-methylation analysis suggests novel functional associations between gene pairs in breast cancer samples
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April 2013 |
ggplot2
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book
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January 2009 |
Variance component model to account for sample structure in genome-wide association studies
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March 2010 |
Methods of integrating data to uncover genotype–phenotype interactions
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January 2015 |
STAR: ultrafast universal RNA-seq aligner
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October 2012 |
From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
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October 2013 |
High-Throughput Screening of Plant Cell-Wall Composition Using Pyrolysis Molecular Beam Mass Spectroscopy
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book
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January 2009 |
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression
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January 2012 |
The MYB46 Transcription Factor Is a Direct Target of SND1 and Regulates Secondary Wall Biosynthesis in Arabidopsis
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September 2007 |
A Custom Correlation Coefficient (CCC) Approach for Fast Identification of Multi-SNP Association Patterns in Genome-Wide SNPs Data: Fast Identification of Multi-SNP Patterns in GWAS
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August 2014 |
Assessment of Populus wood chemistry following the introduction of a Bt toxin gene
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May 2006 |
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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December 2017 |
Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System
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April 2016 |
Network-based integration of systems genetics data reveals pathways associated with lignocellulosic biomass accumulation and processing
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January 2017 |
Involvement of the Chloroplast Signal Recognition Particle cpSRP43 in Acclimation to Conditions Promoting Photooxidative Stress in Arabidopsis
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January 2005 |
Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations
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January 2012 |
Crosstalk between abiotic ultraviolet-B stress and biotic (flg22) stress signalling in Arabidopsis prevents flavonol accumulation in favor of pathogen defence compound production: Elicitor-mediated flavonol pathway suppression
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July 2011 |
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
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June 2014 |
Synergistic effect of different levels of genomic data for cancer clinical outcome prediction
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December 2012 |
A 34K SNP genotyping array for Populus trichocarpa : Design, application to the study of natural populations and transferability to other Populus species
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journal
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January 2013 |
The MADS-Domain Factors AGAMOUS-LIKE15 and AGAMOUS-LIKE18, along with SHORT VEGETATIVE PHASE and AGAMOUS-LIKE24, Are Necessary to Block Floral Gene Expression during the Vegetative Phase
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June 2014 |
The Path Forward for Biofuels and Biomaterials
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January 2006 |
Gene Ontology: tool for the unification of biology
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May 2000 |
Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations
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August 2014 |
Functional Analysis of the Arlequin Mutant Corroborates the Essential Role of the ARLEQUIN/TAGL1 Gene during Reproductive Development of Tomato
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December 2010 |
Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa
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April 2014 |
Phytozome: a comparative platform for green plant genomics
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November 2011 |
Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis
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April 2015 |
Graph Clustering Via a Discrete Uncoupling Process
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January 2008 |
Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock
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journal
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January 2015 |
The class III peroxidase PRX17 is a direct target of the MADS-box transcription factor AGAMOUS-LIKE15 (AGL15) and participates in lignified tissue formation
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August 2016 |
Poplar as a feedstock for biofuels: A review of compositional characteristics
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March 2010 |
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data: Mercator: sequence functional annotation server
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December 2013 |
Reshaping Data with the reshape Package
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January 2007 |
LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis
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May 2017 |
The MYB36 transcription factor orchestrates Casparian strip formation
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June 2015 |
Lignin Biosynthesis and Structure
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May 2010 |
Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis
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August 2014 |
Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems
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November 2016 |
Repression of AGAMOUS-LIKE 24 is a crucial step in promoting flower development
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January 2004 |
Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa
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August 2012 |
Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood
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January 2012 |
MYB Transcription Factors as Regulators of Phenylpropanoid Metabolism in Plants
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May 2015 |
schwimmbad: A uniform interface to parallel processing pools in Python
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September 2017 |
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
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September 2006 |
Allele-Specific Network Reveals Combinatorial Interaction That Transcends Small Effects in Psoriasis GWAS
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September 2014 |
Rapid method for high-quality RNA isolation from seed endosperm containing high levels of starch
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June 2005 |
Molecular characterization of the pyrolysis of biomass
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March 1987 |
The Pfam protein families database: towards a more sustainable future
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December 2015 |
AGAMOUS-LIKE 24, a dosage-dependent mediator of the flowering signals
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November 2002 |
HTSeq--a Python framework to work with high-throughput sequencing data
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September 2014 |
Integrating GWAS and Co-expression Network Data Identifies Bone Mineral Density Genes SPTBN1 and MARK3 and an Osteoblast Functional Module
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January 2017 |
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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November 2003 |
The Phosphoenolpyruvate/Phosphate Translocator Is Required for Phenolic Metabolism, Palisade Cell Development, and Plastid-Dependent Nuclear Gene Expression
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September 1999 |
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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July 2010 |
BamTools: a C++ API and toolkit for analyzing and managing BAM files
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April 2011 |
The variant call format and VCFtools
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journal
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June 2011 |
High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
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January 2015 |
Arabidopsis cpSRP54 regulates carotenoid accumulation in Arabidopsis and Brassica napus
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July 2012 |
Differential DNA methylation marks and gene comethylation of COPD in African-Americans with COPD exacerbations
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November 2016 |
Negative Regulation of the SHATTERPROOF Genes by FRUITFULL During Arabidopsis Fruit Development
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journal
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July 2000 |
The AGAMOUS-LIKE 20 MADS domain protein integrates floral inductive pathways in Arabidopsis
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September 2000 |
Developing integrated crop knowledge networks to advance candidate gene discovery
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December 2016 |
MYB transcription factors in Arabidopsis
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October 2010 |
Detecting outliers: Do not use standard deviation around the mean, use absolute deviation around the median
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July 2013 |
The Sequence Alignment/Map format and SAMtools
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June 2009 |
Two High-Throughput Techniques for Determining Wood Properties as Part of a Molecular Genetics Analysis of Hybrid Poplar and Loblolly Pine
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January 1999 |
A Bayesian Integrative Genomic Model for Pathway Analysis of Complex Traits: Bayesian Model for Analysis of Multiple Genomic Data Types
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March 2012 |
Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples
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August 2012 |
Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog
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January 2012 |
Populus resequencing: towards genome-wide association studies
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September 2011 |
Overexpression of AGAMOUS-LIKE 28 (AGL28) promotes flowering by upregulating expression of floral promoters within the autonomous pathway
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September 2006 |
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
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January 1995 |
Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
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January 2012 |