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Novel Modes of Inhibition of Wild-Type Isocitrate Dehydrogenase 1 (IDH1): Direct Covalent Modification of His315

Journal Article · · Journal of Medicinal Chemistry
IDH1 plays a critical role in a number of metabolic processes and serves as a key source of cytosolic NADPH under conditions of cellular stress. However, few inhibitors of wild-type IDH1 have been reported. Furthermore we present the discovery and biochemical characterization of two novel inhibitors of wild-type IDH1. In addition, we present the first ligand-bound crystallographic characterization of these novel small molecule IDH1 binding pockets. Importantly, the NADPH competitive α,β-unsaturated enone 1 makes a unique covalent linkage through active site H315. As few small molecules have been shown to covalently react with histidine residues, these data support the potential utility of an underutilized strategy for reversible covalent small molecule design.
Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1471640
Journal Information:
Journal of Medicinal Chemistry, Journal Name: Journal of Medicinal Chemistry Journal Issue: 15 Vol. 61; ISSN 0022-2623
Publisher:
American Chemical Society (ACS)Copyright Statement
Country of Publication:
United States
Language:
ENGLISH

References (23)

IDH1 and IDH2 mutations are frequent events in central chondrosarcoma and central and periosteal chondromas but not in other mesenchymal tumours journal May 2011
Δ12-Prostaglandin J2 as a Product and Ligand of Human Serum Albumin: Formation of an Unusual Covalent Adduct at His146 journal December 2009
Discovery of the First Potent Inhibitors of Mutant IDH1 That Lower Tumor 2-HG in Vivo journal August 2012
Idh1 protects murine hepatocytes from endotoxin-induced oxidative stress by regulating the intracellular NADP+/NADPH ratio journal April 2015
IDH1 mutant structures reveal a mechanism of dominant inhibition journal November 2010
Mutations of IDH1 and IDH2 genes in early and accelerated phases of myelodysplastic syndromes and MDS/myeloproliferative neoplasms journal April 2010
Pan-mutant-IDH1 inhibitor BAY1436032 is highly effective against human IDH1 mutant acute myeloid leukemia in vivo journal January 2017
Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia journal November 2011
Reductive carboxylation supports growth in tumour cells with defective mitochondria journal November 2011
Reductive carboxylation supports redox homeostasis during anchorage-independent growth journal April 2016
New IDH1 mutant inhibitors for treatment of acute myeloid leukemia journal October 2015
IDH1 and IDH2 Mutations in Gliomas journal February 2009
Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome journal September 2009
Hypoxia promotes isocitrate dehydrogenase-dependent carboxylation of  -ketoglutarate to citrate to support cell growth and viability journal November 2011
IDH1 deficiency attenuates gluconeogenesis in mouse liver by impairing amino acid utilization journal December 2016
Modification of histidine residues in proteins by reaction with 4-hydroxynonenal. journal May 1992
The anti-angiogenic agent fumagillin covalently modifies a conserved active-site histidine in the Escherichia coli methionine aminopeptidase journal October 1998
Selective Inhibition of Mutant Isocitrate Dehydrogenase 1 (IDH1) via Disruption of a Metal Binding Network by an Allosteric Small Molecule journal November 2014
Structures of Human Cytosolic NADP-dependent Isocitrate Dehydrogenase Reveal a Novel Self-regulatory Mechanism of Activity journal June 2004
Isocitrate Dehydrogenase 1 and 2 Mutations in Cancer: Alterations at a Crossroads of Cellular Metabolism journal May 2010
An Integrated Genomic Analysis of Human Glioblastoma Multiforme journal September 2008
An Inhibitor of Mutant IDH1 Delays Growth and Promotes Differentiation of Glioma Cells journal April 2013
Frequent Mutation of Isocitrate Dehydrogenase (IDH)1 and IDH2 in Cholangiocarcinoma Identified Through Broad-Based Tumor Genotyping journal December 2011

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