rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
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journal
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November 2014 |
The Mineralosphere Concept: Mineralogical Control of the Distribution and Function of Mineral-associated Bacterial Communities
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December 2015 |
Estimating and mapping ecological processes influencing microbial community assembly
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May 2015 |
Decreases in average bacterial community rRNA operon copy number during succession
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November 2015 |
Metals, minerals and microbes: geomicrobiology and bioremediation
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journal
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December 2009 |
Mineral Types and Tree Species Determine the Functional and Taxonomic Structures of Forest Soil Bacterial Communities
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December 2016 |
A continental view of pine-associated ectomycorrhizal fungal spore banks: a quiescent functional guild with a strong biogeographic pattern
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January 2015 |
Up Against The Wall: The Effects of Climate Warming on Soil Microbial Diversity and The Potential for Feedbacks to The Carbon Cycle
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June 2013 |
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
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journal
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July 2013 |
Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses
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July 2013 |
Aggregate-associated soil organic matter as an ecosystem property and a measurement tool
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January 2014 |
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
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October 2017 |
The Role of Lichens in Soil Formation and Plant Succession
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journal
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October 1953 |
Meter-Scale Diversity of Microbial Communities on a Weathered Pegmatite Granite Outcrop in the Wicklow Mountains, Ireland; Evidence for Mineral Induced Selection?
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journal
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January 2010 |
Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition
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journal
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December 2000 |
Biological impact on mineral dissolution: Application of the lichen model to understanding mineral weathering in the rhizosphere
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March 1999 |
An Illumina metabarcoding pipeline for fungi
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journal
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June 2014 |
Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities
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journal
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January 2012 |
Mineral Type Structures Soil Microbial Communities
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journal
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January 2016 |
Influence of Phylogeny on Fungal Community Assembly and Ecosystem Functioning
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journal
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June 2007 |
Microbial hotspots and hot moments in soil: Concept & review
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journal
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April 2015 |
Methods for estimating the effect of litterbag mesh size on decomposition
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journal
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October 2017 |
Does the preferential microbial colonisation of ferromagnesian minerals affect mineral weathering in soil?
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journal
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May 2008 |
Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis
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journal
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June 2015 |
Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons
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journal
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August 2015 |
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem
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journal
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February 2014 |
Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils
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journal
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July 2012 |
Assessment of Soil Microbial Community Structure by Use of Taxon-Specific Quantitative PCR Assays
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journal
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July 2005 |
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
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journal
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October 2009 |
Quantifying community assembly processes and identifying features that impose them
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journal
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June 2013 |
Primary community assembly on land - the missing stages: why are the heterotrophic organisms always there first?
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journal
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May 2002 |
QIIME allows analysis of high-throughput community sequencing data
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journal
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April 2010 |
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
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journal
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October 2013 |
Micro-scale determinants of bacterial diversity in soil
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journal
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November 2013 |
Characterization of Bacterial Community Structure on a Weathered Pegmatitic Granite
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journal
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April 2006 |
Quantitative and qualitative microscale distribution of bacteria in soil
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journal
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October 2001 |
rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea
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journal
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January 2009 |
Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics
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book
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January 1990 |
An in situ inventory of fungi and their associated migrating bacteria in forest soils using fungal highway columns
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journal
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October 2016 |
Organo-mineral associations in temperate soils: Integrating biology, mineralogy, and organic matter chemistry
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journal
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February 2008 |
Organic matter stabilization in soil microaggregates: implications from spatial heterogeneity of organic carbon contents and carbon forms
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journal
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March 2007 |
The Ecology of Acidobacteria: Moving beyond Genes and Genomes
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journal
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May 2016 |
Microbial degradation of organic carbon sorbed to phyllosilicate clays with and without hydrous iron oxide coating: Mineralization of OC-clay-oxide associations
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journal
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October 2014 |
SOM genesis: microbial biomass as a significant source
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journal
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October 2011 |
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
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journal
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April 2016 |
An Endohyphal Bacterium (Chitinophaga, Bacteroidetes) Alters Carbon Source Use by Fusarium keratoplasticum (F. solani Species Complex, Nectriaceae)
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journal
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March 2017 |
Spatial Ecology of Bacteria at the Microscale in Soil
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journal
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January 2014 |
Using null models to disentangle variation in community dissimilarity from variation in α-diversity
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journal
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February 2011 |
Cutadapt removes adapter sequences from high-throughput sequencing reads
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journal
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May 2011 |
Impact of root diversity upon coupling between soil C and N accumulation and bacterial community dynamics and activity: Result of a 30 year rotation experiment
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journal
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April 2017 |
Assembly and response rules: two goals for predictive community ecology
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journal
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April 1992 |
The Individualistic Concept of the Plant Association
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journal
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January 1939 |
Selective progressive response of soil microbial community to wild oat roots
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journal
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November 2008 |
Hydration-controlled bacterial motility and dispersal on surfaces
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journal
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July 2010 |
Characterization of Fungal Community Structure on a Weathered Pegmatitic Granite
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journal
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October 2005 |
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
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journal
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June 2009 |
The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?
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journal
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February 2013 |
The mechanics of community assembly and succession
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journal
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November 1990 |
Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls
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journal
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November 2016 |
Conservation of the Essential Genome Among Caulobacter and Brevundimonas Species
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journal
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January 2016 |
Clay minerals: Precise markers of the spatial and temporal variability of the biogeochemical soil environment
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journal
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October 2008 |
Phylogenies and Community Ecology
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journal
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November 2002 |
Bacterial quorum sensing and nitrogen cycling in rhizosphere soil: Bacterial QS and rhizosphere nitrogen cycling
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journal
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November 2008 |
Persistence of soil organic matter as an ecosystem property
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journal
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October 2011 |
Mineral weathering by bacteria: ecology, actors and mechanisms
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journal
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August 2009 |
Microbial mineral colonization across a subsurface redox transition zone
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journal
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August 2015 |
Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil
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journal
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May 2003 |
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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journal
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April 2013 |
Organic C and N stabilization in a forest soil: Evidence from sequential density fractionation
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journal
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November 2006 |
UPARSE: highly accurate OTU sequences from microbial amplicon reads
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journal
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August 2013 |
Minerals in soil select distinct bacterial communities in their microhabitats: Interactions between minerals and bacteria in soil
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journal
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March 2009 |
Towards a unified paradigm for sequence-based identification of fungi
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journal
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September 2013 |
Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm
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journal
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October 2013 |
Soil bacterial and fungal communities across a pH gradient in an arable soil
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journal
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May 2010 |
Bacterial Associations with Weathering Minerals at the Regolith-Bedrock Interface, Luquillo Experimental Forest, Puerto Rico
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journal
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April 2012 |
Niche tradeoffs, neutrality, and community structure: A stochastic theory of resource competition, invasion, and community assembly
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journal
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July 2004 |
Community Succession and Assembly: Comparing, Contrasting and Combining Paradigms in the Context of Ecological Restoration
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journal
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January 2001 |
Boundaries in Miniature: Two Examples from Soil
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journal
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January 2003 |
Initial Ecosystem Processes as Key Factors of Landscape Development—A Review
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journal
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July 2012 |
Determining mineral weathering rates based on solid and solute weathering gradients and velocities: application to biotite weathering in saprolites
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journal
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October 2002 |
Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance
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journal
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January 2011 |
Microbial selectivity on mineral surfaces: possible implications for weathering processes
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journal
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November 2009 |
Weathering of rocks induced by lichen colonization — a review
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journal
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March 2000 |
Picante: R tools for integrating phylogenies and ecology
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journal
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April 2010 |
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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journal
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December 2014 |
Long-term effect of apatite on ectomycorrhizal growth and community structure
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journal
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March 2012 |
Mapping of Sugar and Amino Acid Availability in Soil around Roots with Bacterial Sensors of Sucrose and Tryptophan
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journal
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January 1999 |
Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
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journal
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December 2016 |
Reply to: “Variables in the effect of land use on soil extrapore enzymatic activity and carbon stabilization” by Glenn (2020)
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journal
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December 2020 |
Mimicking climate warming effects on Alaskan soil microbial communities via gradual temperature increase
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journal
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May 2020 |
Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture
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journal
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March 2021 |
Succession of endophytic fungi and arbuscular mycorrhizal fungi associated with the growth of plant and their correlation with secondary metabolites in the roots of plants
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journal
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April 2021 |
The Individualistic Concept of the Plant Association
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journal
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January 1926 |
Persistence of soil organic matter as an ecosystem property
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text
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January 2011 |