Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

Riley, Robert; Salamov, Asaf A.; Brown, Daren W.; Nagy, Laszlo G.; Floudas, Dimitrios; Held, Benjamin W.; Levasseur, Anthony; Lombard, Vincent; Morin, Emmanuelle; Otillar, Robert; Lindquist, Erika A.; Sun, Hui; LaButti, Kurt M.; Schmutz, Jeremy; Jabbour, Dina; Luo, Hong; Baker, Scott E.; Pisabarro, Antonio G.; Walton, Jonathan D.; Blanchette, Robert A.; Henrissat, Bernard; Martin, Francis; Cullen, Dan; Hibbett, David S.; Grigoriev, Igor V.

doi:10.1073/pnas.1400592111

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

Journal Article · Mon Jun 23 00:00:00 EDT 2014 · Proceedings of the National Academy of Sciences of the United States of America

DOI:https://doi.org/10.1073/pnas.1400592111· OSTI ID:1469149

Riley, Robert ^[1]; Salamov, Asaf A. ^[1]; Brown, Daren W. ^[2]; Nagy, Laszlo G. ^[3]; Floudas, Dimitrios ^[3]; Held, Benjamin W. ^[4]; Levasseur, Anthony ^[5]; Lombard, Vincent ^[6]; Morin, Emmanuelle ^[7]; Otillar, Robert ^[1]; Lindquist, Erika A. ^[1]; Sun, Hui ^[1]; LaButti, Kurt M. ^[1]; Schmutz, Jeremy ^[8]; Jabbour, Dina ^[9]; Luo, Hong ^[9]; Baker, Scott E. ^[10]; Pisabarro, Antonio G. ^[11]; Walton, Jonathan D. ^[9]; Blanchette, Robert A. ^[4] more »

USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
US Dept. of Agriculture (USDA)., Peoria, IL (United States)
Clark Univ., Worcester, MA (United States). Dept. of Biology
Univ. of Minnesota, St. Paul, MN (United States)
Aix-Marseille Univ., Marseille (France). Inst. National de la Recherche Agronomique
Aix-Marseille Univ., Marseille (France). Centre National de la Recherche Scientifique
Inst. National de la Recherche Agronomique (INRA), Champenoux (France). Inst. National de la Recherche Agronomique-Université de Lorraine, Interactions Arbres/Micro-organismes
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); HudsonAlpha Inst. of Biotechnology, Huntsville, AL (United States)
Michigan State Univ., East Lansing, MI (United States). DOE Great Lakes Bioenergy Research Center
Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab. (EMSL)
Univ. Pública de Navarra, Pamplona (Spain). Dept. de Producción Agraria
Inst. National de la Recherche Agronomique (INRA), Champenoux (France). Inst. National de la Recherche Agronomique-Université de Lorraine, Interactions Arbres/Micro-organismes
USDA Forest Products Lab., Madison, WI (United States)

Basidiomycota (basidiomycetes) make up 32% of the described fungi and include most wood-decaying species, as well as pathogens and mutualistic symbionts. Wood-decaying basidiomycetes have typically been classified as either white rot or brown rot, based on the ability (in white rot only) to degrade lignin along with cellulose and hemicellulose. Prior genomic comparisons suggested that the two decay modes can be distinguished based on the presence or absence of ligninolytic class II peroxidases (PODs), as well as the abundance of enzymes acting directly on crystalline cellulose (reduced in brown rot). To assess the generality of the white-rot/brown-rot classification paradigm, we compared the genomes of 33 basidiomycetes, including four newly sequenced wood decayers, and performed phylogenetically informed principal-components analysis (PCA) of a broad range of gene families encoding plant biomass-degrading enzymes. The newly sequenced Botryobasidium botryosum and Jaapia argillacea genomes lack PODs but possess diverse enzymes acting on crystalline cellulose, and they group close to the model white-rot species Phanerochaete chrysosporium in the PCA. Furthermore, laboratory assays showed that both B. botryosum and J. argillacea can degrade all polymeric components of woody plant cell walls, a characteristic of white rot. We also found expansions in reducing polyketide synthase genes specific to the brown-rot fungi. Our results suggest a continuum rather than a dichotomy between the white-rot and brown-rot modes of wood decay. A more nuanced categorization of rot types is needed, based on an improved understanding of the genomics and biochemistry of wood decay.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)

Grant/Contract Number:: AC02-05CH11231; FC02-07ER64494

OSTI ID:: 1469149

Alternate ID(s):: OSTI ID: 1556894

Report Number(s):: LBNL--178088; ir:178088

Journal Information:: Proceedings of the National Academy of Sciences of the United States of America, Journal Name: Proceedings of the National Academy of Sciences of the United States of America Journal Issue: 27 Vol. 111; ISSN 0027-8424

Publisher:: National Academy of Sciences, Washington, DC (United States)Copyright Statement

Country of Publication:: United States

Language:: English

References (95)

Lignin-modifying enzymes in filamentous basidiomycetes - ecological, functional and phylogenetic review Lundell, Taina K.; Mäkelä, Miia R.; Hildén, Kristiina Journal of Basic Microbiology, Vol. 50, Issue 1 https://doi.org/10.1002/jobm.200900338	journal	February 2010
Basic Local Alignment Search Tool Altschul, S. Journal of Molecular Biology, Vol. 215, Issue 3 https://doi.org/10.1006/jmbi.1990.9999	journal	October 1990
Microbial and Enzymatic Degradation of Wood and Wood Components Eriksson, Karl-Erik L.; Blanchette, Robert A.; Ander, Paul Springer Series in Wood Science https://doi.org/10.1007/978-3-642-46687-8	book	January 1990
The importance of phenol oxidase activity in lignin degradation by the white-rot fungus Sporotrichum pulverulentum Ander, Paul; Eriksson, Karl-Erik Archives of Microbiology, Vol. 109, Issue 1-2 https://doi.org/10.1007/BF00425105	journal	January 1976
Influence of culture parameters on lignin metabolism byPhanerochaete chrysosporium Kirk, T. K.; Schultz, E.; Connors, W. J. Archives of Microbiology, Vol. 117, Issue 3 https://doi.org/10.1007/BF00738547	journal	June 1978
An Antarctic Hot Spot for Fungi at Shackleton's Historic Hut on Cape Royds Blanchette, Robert A.; Held, Benjamin W.; Arenz, Brett E. Microbial Ecology, Vol. 60, Issue 1 https://doi.org/10.1007/s00248-010-9664-z	journal	April 2010
Lignocellulosic polysaccharides and lignin degradation by wood decay fungi: the relevance of nonenzymatic Fenton-based reactions Arantes, Valdeir; Milagres, Adriane M. F.; Filley, Timothy R. Journal of Industrial Microbiology & Biotechnology, Vol. 38, Issue 4 https://doi.org/10.1007/s10295-010-0798-2	journal	August 2010
Demethoxylation of [O14CH3]-labelled lignin model compounds by the brown-rot fungi Gloeophyllum trabeum and Poria (Postia) placenta Niemenmaa, Outi; Uusi-Rauva, Antti; Hatakka, Annele Biodegradation, Vol. 19, Issue 4 https://doi.org/10.1007/s10532-007-9161-3	journal	November 2007
Multiple ligninase-related genes from Phanerochaete chrysosporium Brown, Allan; Sims, Paul F. G.; Raeder, Ute Gene, Vol. 73, Issue 1 https://doi.org/10.1016/0378-1119(88)90314-9	journal	December 1988
Significant levels of extracellular reactive oxygen species produced by brown rot basidiomycetes on cellulose Cohen, Roni; Jensen, Kenneth A.; Houtman, Carl J. FEBS Letters, Vol. 531, Issue 3 https://doi.org/10.1016/S0014-5793(02)03589-5	journal	October 2002
Biodegradative mechanism of the brown rot basidiomycete Gloeophyllum trabeum : evidence for an extracellular hydroquinone-driven fenton reaction Kerem, Zohar; Jensen, Kenneth A.; Hammel, Kenneth E. FEBS Letters, Vol. 446, Issue 1 https://doi.org/10.1016/S0014-5793(99)00180-5	journal	March 1999
Manganese(II) oxidation by manganese peroxidase from the basidiomycete Phanerochaete chrysosporium. Kinetic mechanism and role of chelators. Wariishi, H.; Valli, K.; Gold, M. H. Journal of Biological Chemistry, Vol. 267, Issue 33 https://doi.org/10.1016/S0021-9258(18)35893-9	journal	November 1992
Crystallographic refinement of lignin peroxidase at 2 A. Poulos, T. L.; Edwards, S. L.; Wariishi, H. Journal of Biological Chemistry, Vol. 268, Issue 6 https://doi.org/10.1016/S0021-9258(18)53627-9	journal	February 1993
Basic local alignment search tool Altschul, Stephen F.; Gish, Warren; Miller, Webb Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410 https://doi.org/10.1016/S0022-2836(05)80360-2	journal	October 1990
Molecular biology and structure-function of lignin-degrading heme peroxidases Martı́nez, Angel T. Enzyme and Microbial Technology, Vol. 30, Issue 4 https://doi.org/10.1016/S0141-0229(01)00521-X	journal	April 2002
Sequential saccharification of corn fiber and ethanol production by the brown rot fungus Gloeophyllum trabeum Rasmussen, M. L.; Shrestha, P.; Khanal, S. K. Bioresource Technology, Vol. 101, Issue 10 https://doi.org/10.1016/j.biortech.2009.12.115	journal	May 2010
Draft Genome of Omphalotus olearius Provides a Predictive Framework for Sesquiterpenoid Natural Product Biosynthesis in Basidiomycota Wawrzyn, Grayson T.; Quin, Maureen B.; Choudhary, Swati Chemistry & Biology, Vol. 19, Issue 6 https://doi.org/10.1016/j.chembiol.2012.05.012	journal	June 2012
The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction Padamsee, Mahajabeen; Kumar, T. K. Arun; Riley, Robert Fungal Genetics and Biology, Vol. 49, Issue 3 https://doi.org/10.1016/j.fgb.2012.01.007	journal	March 2012
Genome mining reveals the evolutionary origin and biosynthetic potential of basidiomycete polyketide synthases Lackner, Gerald; Misiek, Mathias; Braesel, Jana Fungal Genetics and Biology, Vol. 49, Issue 12 https://doi.org/10.1016/j.fgb.2012.09.009	journal	December 2012
Cryptococcus neoformans, a fungus under stress Brown, Sarah M.; Campbell, Leona T.; Lodge, Jennifer K. Current Opinion in Microbiology, Vol. 10, Issue 4 https://doi.org/10.1016/j.mib.2007.05.014	journal	August 2007
A higher-level phylogenetic classification of the Fungi Hibbett, David S.; Binder, Manfred; Bischoff, Joseph F. Mycological Research, Vol. 111, Issue 5 https://doi.org/10.1016/j.mycres.2007.03.004	journal	May 2007
Role of fungal peroxidases in biological ligninolysis Hammel, K.; Cullen, D. Current Opinion in Plant Biology, Vol. 11, Issue 3 https://doi.org/10.1016/j.pbi.2008.02.003	journal	June 2008
Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi) Brandon Matheny, P.; Wang, Zheng; Binder, Manfred Molecular Phylogenetics and Evolution, Vol. 43, Issue 2 https://doi.org/10.1016/j.ympev.2006.08.024	journal	May 2007
Stimulation of Lignocellulosic Biomass Hydrolysis by Proteins of Glycoside Hydrolase Family 61 Structure and Function of a Large, Enigmatic Family Harris, Paul; Welner, Ditte; McFarland, K. Biochemistry, Vol. 49, Issue 15, p. 3305-3316 https://doi.org/10.1021/bi100009p	journal	April 2010
Autocatalytic Formation of a Hydroxy Group at Cβ of Trp171 in Lignin Peroxidase ^† Blodig, Wolfgang; Doyle, Wendy A.; Smith, Andrew T. Biochemistry, Vol. 37, Issue 25 https://doi.org/10.1021/bi9727186	journal	June 1998
Comparative Characterization of Fungal Anthracenone and Naphthacenedione Biosynthetic Pathways Reveals an α-Hydroxylation-Dependent Claisen-like Cyclization Catalyzed by a Dimanganese Thioesterase Li, Yanran; Chooi, Yit-Heng; Sheng, Yuewei Journal of the American Chemical Society, Vol. 133, Issue 39 https://doi.org/10.1021/ja206906d	journal	October 2011
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis Martin, F.; Aerts, A.; Ahrén, D. Nature, Vol. 452, Issue 7183 https://doi.org/10.1038/nature06556	journal	March 2008
Genome sequence of the model mushroom Schizophyllum commune Ohm, Robin A.; de Jong, Jan F.; Lugones, Luis G. Nature Biotechnology, Vol. 28, Issue 9 https://doi.org/10.1038/nbt.1643	journal	July 2010
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 Martinez, Diego; Larrondo, Luis F.; Putnam, Nik Nature Biotechnology, Vol. 22, Issue 6 https://doi.org/10.1038/nbt967	journal	May 2004
Fungal secondary metabolism — from biochemistry to genomics Keller, Nancy P.; Turner, Geoffrey; Bennett, Joan W. Nature Reviews Microbiology, Vol. 3, Issue 12, p. 937-947 https://doi.org/10.1038/nrmicro1286	journal	December 2005
Malassezia globosa and restricta: Breakthrough Understanding of the Etiology and Treatment of Dandruff and Seborrheic Dermatitis through Whole-Genome Analysis Dawson, Thomas L. Journal of Investigative Dermatology Symposium Proceedings, Vol. 12, Issue 2 https://doi.org/10.1038/sj.jidsymp.5650049	journal	December 2007
Production of glycolipid biosurfactants by basidiomycetous yeasts Morita, Tomotake; Fukuoka, Tokuma; Imura, Tomohiro Biotechnology and Applied Biochemistry, Vol. 53, Issue 1 https://doi.org/10.1042/BA20090033	journal	May 2009
Ligninolytic enzymes of the white-rot fungus Phlebia radiata Niku-Paavola, M. L.; Karhunen, E.; Salola, P. Biochemical Journal, Vol. 254, Issue 3 https://doi.org/10.1042/bj2540877	journal	September 1988
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion Martinez, Diego; Challacombe, Jean; Morgenstern, Ingo Proceedings of the National Academy of Sciences, Vol. 106, Issue 6 https://doi.org/10.1073/pnas.0809575106	journal	February 2009
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus) Stajich, J. E.; Wilke, S. K.; Ahren, D. Proceedings of the National Academy of Sciences, Vol. 107, Issue 26 https://doi.org/10.1073/pnas.1003391107	journal	June 2010
Obligate biotrophy features unraveled by the genomic analysis of rust fungi Duplessis, S.; Cuomo, C. A.; Lin, Y. -C. Proceedings of the National Academy of Sciences, Vol. 108, Issue 22 https://doi.org/10.1073/pnas.1019315108	journal	May 2011
Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components Quinlan, R. J.; Sweeney, M. D.; Lo Leggio, L. Proceedings of the National Academy of Sciences, Vol. 108, Issue 37, p. 15079-15084 https://doi.org/10.1073/pnas.1105776108	journal	August 2011
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis Fernandez-Fueyo, E.; Ruiz-Duenas, F. J.; Ferreira, P. Proceedings of the National Academy of Sciences, Vol. 109, Issue 14, p. 5458-5463 https://doi.org/10.1073/pnas.1119912109	journal	March 2012
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche Morin, E.; Kohler, A.; Baker, A. R. Proceedings of the National Academy of Sciences, Vol. 109, Issue 43 https://doi.org/10.1073/pnas.1206847109	journal	October 2012
Lignin-degrading enzyme from Phanerochaete chrysosporium: Purification, characterization, and catalytic properties of a unique H2O2-requiring oxygenase Tien, M.; Kirk, T. K. Proceedings of the National Academy of Sciences, Vol. 81, Issue 8 https://doi.org/10.1073/pnas.81.8.2280	journal	April 1984
Aspergillus has distinct fatty acid synthases for primary and secondary metabolism Brown, D. W.; Adams, T. H.; Keller, N. P. Proceedings of the National Academy of Sciences, Vol. 93, Issue 25 https://doi.org/10.1073/pnas.93.25.14873	journal	December 1996
Mycoparasitism by Basidiomycetes in Culture Griffith, N. T.; Barnett, H. L. Mycologia, Vol. 59, Issue 1 https://doi.org/10.1080/00275514.1967.12018401	journal	January 1967
Comparison of wood decay among diverse lignicolous fungi Worrall, James J.; Anagnost, Susan E.; Zabel, Robert A. Mycologia, Vol. 89, Issue 2 https://doi.org/10.1080/00275514.1997.12026772	journal	March 1997
A phylogenetic overview of the Agaricomycotina Hibbett, David S. Mycologia, Vol. 98, Issue 6 https://doi.org/10.1080/15572536.2006.11832621	journal	November 2006
Phylogenies and the Comparative Method Felsenstein, Joseph The American Naturalist, Vol. 125, Issue 1 https://doi.org/10.1086/284325	journal	January 1985
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models Stamatakis, Alexandros Bioinformatics, Vol. 22, Issue 21 https://doi.org/10.1093/bioinformatics/btl446	journal	August 2006
Clustal W and Clustal X version 2.0 Larkin, M. A.; Blackshields, G.; Brown, N. P. Bioinformatics, Vol. 23, Issue 21, p. 2947-2948 https://doi.org/10.1093/bioinformatics/btm404	journal	September 2007
An efficient algorithm for large-scale detection of protein families Enright, A. J. Nucleic Acids Research, Vol. 30, Issue 7 https://doi.org/10.1093/nar/30.7.1575	journal	April 2002
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform Katoh, K. Nucleic Acids Research, Vol. 30, Issue 14 https://doi.org/10.1093/nar/gkf436	journal	July 2002
Database resources of the National Center for Biotechnology Information Wheeler, D. L.; Barrett, T.; Benson, D. A. Nucleic Acids Research, Vol. 36, Issue Database https://doi.org/10.1093/nar/gkm1000	journal	December 2007
GenBank Benson, D. A.; Karsch-Mizrachi, I.; Lipman, D. J. Nucleic Acids Research, Vol. 37, Issue Database https://doi.org/10.1093/nar/gkn723	journal	January 2009
Database resources of the National Center for Biotechnology Information Sayers, E. W.; Barrett, T.; Benson, D. A. Nucleic Acids Research, Vol. 37, Issue Database https://doi.org/10.1093/nar/gkn741	journal	January 2009
The carbohydrate-active enzymes database (CAZy) in 2013 Lombard, Vincent; Golaconda Ramulu, Hemalatha; Drula, Elodie Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1178	journal	November 2013
MycoCosm portal: gearing up for 1000 fungal genomes Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1183	journal	December 2013
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis Castresana, J. Molecular Biology and Evolution, Vol. 17, Issue 4 https://doi.org/10.1093/oxfordjournals.molbev.a026334	journal	April 2000
Characterization of Seedling Infection Types and Adult Plant Infection Responses of Monogenic Sr Gene Lines to Race TTKS of Puccinia graminis f. sp. tritici Jin, Y.; Singh, R. P.; Ward, R. W. Plant Disease, Vol. 91, Issue 9 https://doi.org/10.1094/PDIS-91-9-1096	journal	September 2007
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs Zerbino, D. R.; Birney, E. Genome Research, Vol. 18, Issue 5 https://doi.org/10.1101/gr.074492.107	journal	February 2008
Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2 Jaffe, D. B. Genome Research, Vol. 13, Issue 1 https://doi.org/10.1101/gr.828403	journal	January 2003
Infection of roots of Norway spruce (Picea abies) by Heterobasidion annosum.: 1 Initial reactions in sapwood by wounding and infection Johansson, M.; Stenlid, J. Forest Pathology, Vol. 15, Issue 1 https://doi.org/10.1111/j.1439-0329.1985.tb01040.x	journal	March 1985
Infection of roots of Norway spruce (Picea abies) by Heterobasidion annosum.: II. Early changes in phenolic content and toxicity Stenlid, J.; Johansson, M. Forest Pathology, Vol. 17, Issue 4-5 https://doi.org/10.1111/j.1439-0329.1987.tb01019.x	journal	August 1987
Evidence for cleavage of lignin by a brown rot basidiomycete Yelle, Daniel J.; Ralph, John; Lu, Fachuang Environmental Microbiology, Vol. 10, Issue 7 https://doi.org/10.1111/j.1462-2920.2008.01605.x	journal	July 2008
Size-Correction and Principal Components for Interspecific Comparative Studies Revell, Liam J. Evolution, Vol. 63, Issue 12 https://doi.org/10.1111/j.1558-5646.2009.00804.x	journal	December 2009
Use of electron microscopy for aiding our understanding of wood biodegradation Daniel, Geoffrey FEMS Microbiology Reviews, Vol. 13, Issue 2-3 https://doi.org/10.1111/j.1574-6976.1994.tb00043.x	journal	March 1994
Degradation of cellulose by basidiomycetous fungi Baldrian, Petr; Valášková, Vendula FEMS Microbiology Reviews, Vol. 32, Issue 3 https://doi.org/10.1111/j.1574-6976.2008.00106.x	journal	May 2008
An Oxidative Enzyme Boosting the Enzymatic Conversion of Recalcitrant Polysaccharides Vaaje-Kolstad, Gustav; Westereng, Bjørge; Horn, Svein J. Science, Vol. 330, Issue 6001, p. 219-222 https://doi.org/10.1126/science.1192231	journal	October 2010
The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi Eastwood, D. C.; Floudas, D.; Binder, M. Science, Vol. 333, Issue 6043, p. 762-765 https://doi.org/10.1126/science.1205411	journal	July 2011
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes Floudas, Dimitrios; Binder, Manfred; Riley, Robert Science, Vol. 336, Issue 6089 https://doi.org/10.1126/science.1221748	journal	June 2012
Evidence from Serpula lacrymans that 2,5-Dimethoxyhydroquinone Is a Lignocellulolytic Agent of Divergent Brown Rot Basidiomycetes Korripally, Premsagar; Timokhin, Vitaliy I.; Houtman, Carl J. Applied and Environmental Microbiology, Vol. 79, Issue 7 https://doi.org/10.1128/AEM.03880-12	journal	February 2013
Oxidoreductive Cellulose Depolymerization by the Enzymes Cellobiose Dehydrogenase and Glycoside Hydrolase 61 Langston, James A.; Shaghasi, Tarana; Abbate, Eric Applied and Environmental Microbiology, Vol. 77, Issue 19, p. 7007-7015 https://doi.org/10.1128/AEM.05815-11	journal	August 2011
The ligninolytic system of the white rot fungus Pycnoporus cinnabarinus: purification and characterization of the laccase. Eggert, C.; Temp, U.; Eriksson, K. E. Applied and environmental microbiology, Vol. 62, Issue 4 https://doi.org/10.1128/AEM.62.4.1151-1158.1996	journal	January 1996
Pathways for Extracellular Fenton Chemistry in the Brown Rot Basidiomycete Gloeophyllum trabeum Jensen, K. A.; Houtman, C. J.; Ryan, Z. C. Applied and Environmental Microbiology, Vol. 67, Issue 6 https://doi.org/10.1128/AEM.67.6.2705-2711.2001	journal	June 2001
Brain abscess caused by Schizophyllum commune: an emerging basidiomycete pathogen. Rihs, J. D.; Padhye, A. A.; Good, C. B. Journal of clinical microbiology, Vol. 34, Issue 7 https://doi.org/10.1128/JCM.34.7.1628-1632.1996	journal	January 1996
Molecular biology of the lignin-degrading basidiomycete Phanerochaete chrysosporium. Gold, M. H.; Alic, M. Microbiological Reviews, Vol. 57, Issue 3 https://doi.org/10.1128/MMBR.57.3.605-622.1993	journal	January 1993
The ligninolytic system of the white rot fungus Pycnoporus cinnabarinus: purification and characterization of the laccase. Eggert, C.; Temp, U.; Eriksson, K. E. Applied and environmental microbiology, Vol. 62, Issue 4 https://doi.org/10.1128/aem.62.4.1151-1158.1996	journal	January 1996
Involvement of a new enzyme, glyoxal oxidase, in extracellular H2O2 production by Phanerochaete chrysosporium. Kersten, P. J.; Kirk, T. K. Journal of Bacteriology, Vol. 169, Issue 5 https://doi.org/10.1128/jb.169.5.2195-2201.1987	journal	May 1987
Brain abscess caused by Schizophyllum commune: an emerging basidiomycete pathogen. Rihs, J. D.; Padhye, A. A.; Good, C. B. Journal of clinical microbiology, Vol. 34, Issue 7 https://doi.org/10.1128/jcm.34.7.1628-1632.1996	journal	January 1996
Molecular biology of the lignin-degrading basidiomycete Phanerochaete chrysosporium Gold, M. H.; Alic, M. Microbiological Reviews, Vol. 57, Issue 3 https://doi.org/10.1128/mr.57.3.605-622.1993	journal	September 1993
Resolving the phylogenetic position of the Wallemiomycetes: an enigmatic major lineage of Basidiomycota Matheny, P. Brandon; Gossmann, Jasmin A.; Zalar, Polona Canadian Journal of Botany, Vol. 84, Issue 12 https://doi.org/10.1139/b06-128	journal	December 2006
Population structure of Heterobasidion annosum from North America and Europe Otrosina, William J.; Chase, Thomas E.; Cobb Jr., Fields W. Canadian Journal of Botany, Vol. 71, Issue 8 https://doi.org/10.1139/b93-123	journal	August 1993
Degradation of the lignocellulose complex in wood Blanchette, Robert A. Canadian Journal of Botany, Vol. 73, Issue S1 https://doi.org/10.1139/b95-350	journal	December 1995
Molecular Genetics of Polyketides and its Comparison to Fatty Acid Biosynthesis Hopwood, David A.; Sherman, David H. Annual Review of Genetics, Vol. 24, Issue 1 https://doi.org/10.1146/annurev.ge.24.120190.000345	journal	December 1990
Enzymatic "Combustion": The Microbial Degradation of Lignin Kirk, T. K.; Farrell, R. L. Annual Review of Microbiology, Vol. 41, Issue 1, p. 465-501 https://doi.org/10.1146/annurev.mi.41.100187.002341	journal	October 1987
Delignification by Wood-Decay Fungi Blanchette, R. A. Annual Review of Phytopathology, Vol. 29, Issue 1 https://doi.org/10.1146/annurev.py.29.090191.002121	journal	September 1991
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes Levasseur, Anthony; Drula, Elodie; Lombard, Vincent Biotechnology for Biofuels, Vol. 6, Issue 1, Article No. 41 https://doi.org/10.1186/1754-6834-6-41	journal	January 2013
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes Koonin, Eugene V.; Fedorova, Natalie D.; Jackson, John D. Genome Biology, Vol. 5, Issue 2 https://doi.org/10.1186/gb-2004-5-2-r7	journal	January 2004
Production of 2,5-dimethoxyhydroquinone by the brown-rot fungus Serpula lacrymans to drive extracellular Fenton reaction Shimokawa, T.; Nakamura, M.; Hayashi, N. Holzforschung, Vol. 58, Issue 3 https://doi.org/10.1515/HF.2004.047	journal	May 2004
Variability of Wood Degrading Enzymes of Schizophyllum commune Schmidt, O.; Liese, W. Holzforschung, Vol. 34, Issue 2 https://doi.org/10.1515/hfsg.1980.34.2.67	journal	January 1980
Basidiomycosis: a review of the literature Lacaz, Carlos da Silva; Heins-Vaccari, Elisabeth Maria; Melo, Natalina Takashi de Revista do Instituto de Medicina Tropical de São Paulo, Vol. 38, Issue 5 https://doi.org/10.1590/S0036-46651996000500011	journal	October 1996
Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha Liebal, Ulf Winfried; Fabry, Brigida A.; Ravikrishnan, Aarthi RWTH Aachen University https://doi.org/10.18154/rwth-2021-02761	text	January 2021
Crystallographic Refinement of Lignin Peroxidase at 2 Angstroms Poulos, T. L.; Edwards, S. L.; Wariishi, H. Worldwide Protein Data Bank https://doi.org/10.2210/pdb1lga/pdb	text	January 1993
Mycoparasitism by Basidiomycetes in Culture Griffith, N. T.; Barnett, H. L. Mycologia, Vol. 59, Issue 1 https://doi.org/10.2307/3756948	journal	January 1967
Comparison of Wood Decay among Diverse Lignicolous Fungi Worrall, James J.; Anagnost, Susan E.; Zabel, Robert A. Mycologia, Vol. 89, Issue 2 https://doi.org/10.2307/3761073	journal	March 1997
Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae dominated by corticioid forms Binder, Manfred; Larsson, Karl-Henrik; Matheny, P. Brandon Mycologia, Vol. 102, Issue 4 https://doi.org/10.3852/09-288	journal	July 2010
Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay Hori, Chiaki; Gaskell, Jill; Igarashi, Kiyohiko Mycologia, Vol. 105, Issue 6 https://doi.org/10.3852/13-072	journal	November 2013
A phylogenetic overview of the Agaricomycotina Hibbett, D. S. Mycologia, Vol. 98, Issue 6 https://doi.org/10.3852/mycologia.98.6.917	journal	November 2006

Cited By (161)

Description of the first fungal dye-decolorizing peroxidase oxidizing manganese(II) Fernández-Fueyo, Elena; Linde, Dolores; Almendral, David Applied Microbiology and Biotechnology, Vol. 99, Issue 21 https://doi.org/10.1007/s00253-015-6665-3	journal	May 2015
Lignocellulose degradation mechanisms across the Tree of Life Cragg, Simon M.; Beckham, Gregg T.; Bruce, Neil C. Current Opinion in Chemical Biology, Vol. 29 https://doi.org/10.1016/j.cbpa.2015.10.018	journal	December 2015
Peptide Macrocyclization Catalyzed by a Prolyl Oligopeptidase Involved in α-Amanitin Biosynthesis Luo, Hong; Hong, Sung-Yong; Sgambelluri, R. Michael Chemistry & Biology, Vol. 21, Issue 12 https://doi.org/10.1016/j.chembiol.2014.10.015	journal	December 2014
Comparative analysis of genome sequences of the conifer tree pathogen, Heterobasidion annosum s.s . Choi, Jaeyoung; Lee, Gir-Won; Kim, Ki-Tae Genomics Data, Vol. 14 https://doi.org/10.1016/j.gdata.2017.10.003	journal	December 2017
The good, the bad and the tasty: The many roles of mushrooms de Mattos-Shipley, K. M. J.; Ford, K. L.; Alberti, F. Studies in Mycology, Vol. 85 https://doi.org/10.1016/j.simyco.2016.11.002	journal	September 2016
Diversity of cytosine methylation across the fungal tree of life Bewick, Adam J.; Hofmeister, Brigitte T.; Powers, Rob A. Nature Ecology & Evolution, Vol. 3, Issue 3 https://doi.org/10.1038/s41559-019-0810-9	journal	February 2019
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi Knapp, Dániel G.; Németh, Julianna B.; Barry, Kerrie Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-24686-4	journal	April 2018
The evolution of genomic and epigenomic features in two Pleurotus fungi Zhang, Zhibin; Wen, Jiawei; Li, Juzuo Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-26619-7	journal	May 2018
Identification of a Novel Anti-cancer Protein, FIP-bbo, from Botryobasidium botryosum and Protein Structure Analysis using Molecular Dynamic Simulation Wang, Ying; Gao, Ying Nv; Bai, Rui Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-42104-1	journal	April 2019
Novel redox-active enzymes for ligninolytic applications revealed from multiomics analyses of Peniophora sp. CBMAI 1063, a laccase hyper-producer strain Brenelli, Lívia B.; Persinoti, Gabriela F.; Cairo, João Paulo L. Franco Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-53608-1	journal	November 2019
In silico definition of new ligninolytic peroxidase sub-classes in fungi and putative relation to fungal life style Mathé, Catherine; Fawal, Nizar; Roux, Christophe Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-56774-4	journal	December 2019
Evolutionary convergence in lignin-degrading enzymes Ayuso-Fernández, Iván; Ruiz-Dueñas, Francisco J.; Martínez, Angel T. Proceedings of the National Academy of Sciences, Vol. 115, Issue 25 https://doi.org/10.1073/pnas.1802555115	journal	June 2018
Peroxidase evolution in white-rot fungi follows wood lignin evolution in plants Ayuso-Fernández, Iván; Rencoret, Jorge; Gutiérrez, Ana Proceedings of the National Academy of Sciences, Vol. 116, Issue 36 https://doi.org/10.1073/pnas.1905040116	journal	August 2019
Demonstration of Lignin-to-Peroxidase Direct Electron Transfer: A TRANSIENT-STATE KINETICS, DIRECTED MUTAGENESIS, EPR, AND NMR STUDY Sáez-Jiménez, Verónica; Baratto, Maria Camilla; Pogni, Rebecca Journal of Biological Chemistry, Vol. 290, Issue 38 https://doi.org/10.1074/jbc.m115.665919	journal	August 2015
Comparative study of genome-wide plant biomass-degrading CAZymes in white rot, brown rot and soft rot fungi Sista Kameshwar, Ayyappa Kumar; Qin, Wensheng Mycology, Vol. 9, Issue 2 https://doi.org/10.1080/21501203.2017.1419296	journal	December 2017
Somatic transposition and meiotically driven elimination of an active helitron family inPleurotus ostreatus Borgognone, Alessandra; Castanera, Raúl; Muguerza, Elaia DNA Research https://doi.org/10.1093/dnares/dsw060	journal	January 2017
Comparative genome and transcriptome analyses reveal adaptations to opportunistic infections in woody plant degrading pathogens of Botryosphaeriaceae Yan, Ji Ye; Zhao, Wen Sheng; Chen, Zhen DNA Research, Vol. 25, Issue 1 https://doi.org/10.1093/dnares/dsx040	journal	October 2017
Decomposition of spruce wood and release of volatile organic compounds depend on decay type, fungal interactions and enzyme production patterns Mali, Tuulia; Mäki, Mari; Hellén, Heidi FEMS Microbiology Ecology, Vol. 95, Issue 9 https://doi.org/10.1093/femsec/fiz135	journal	August 2019
An evolutionary signal to fungal succession during plant litter decay Vivelo, Sasha; Bhatnagar, Jennifer M. FEMS Microbiology Ecology, Vol. 95, Issue 10 https://doi.org/10.1093/femsec/fiz145	journal	September 2019
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita Hess, Jaqueline; Skrede, Inger; Chaib De Mares, Maryam Molecular Biology and Evolution https://doi.org/10.1093/molbev/msy179	journal	September 2018
Hallmarks of basidiomycete soft- and white-rot in wood-decay -omics data of Armillaria Sahu, Neha; Merényi, Zsolt; Bálint, Balázs bioRxiv https://doi.org/10.1101/2020.05.04.075879	journal	May 2020
Fungal evolution: major ecological adaptations and evolutionary transitions Naranjo‐Ortiz, Miguel A.; Gabaldón, Toni Biological Reviews https://doi.org/10.1111/brv.12510	journal	April 2019
Fungal evolution: diversity, taxonomy and phylogeny of the Fungi Naranjo‐Ortiz, Miguel A.; Gabaldón, Toni Biological Reviews, Vol. 94, Issue 6 https://doi.org/10.1111/brv.12550	journal	October 2019
Comparative and population genomic landscape of Phellinus noxius : A hypervariable fungus causing root rot in trees Chung, Chia-Lin; Lee, Tracy J.; Akiba, Mitsuteru Molecular Ecology, Vol. 26, Issue 22 https://doi.org/10.1111/mec.14359	journal	October 2017
Gene Regulation Shifts Shed Light on Fungal Adaption in Plant Biomass Decomposers Zhang, Jiwei; Silverstein, Kevin A. T.; Castaño, Jesus David mBio, Vol. 10, Issue 6 https://doi.org/10.1128/mbio.02176-19	journal	November 2019
Proteases of Wood Rot Fungi with Emphasis on the GenusPleurotus Inácio, Fabíola Dorneles; Ferreira, Roselene Oliveira; Araujo, Caroline Aparecida Vaz de BioMed Research International, Vol. 2015 https://doi.org/10.1155/2015/290161	journal	January 2015
Classification of fungal and bacterial lytic polysaccharide monooxygenases Busk, Peter K.; Lange, Lene BMC Genomics, Vol. 16, Issue 1 https://doi.org/10.1186/s12864-015-1601-6	journal	May 2015
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus Perlin, Michael H.; Amselem, Joelle; Fontanillas, Eric BMC Genomics, Vol. 16, Issue 1 https://doi.org/10.1186/s12864-015-1660-8	journal	June 2015
De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood Oghenekaro, Abbot O.; Raffaello, Tommaso; Kovalchuk, Andriy BMC Genomics, Vol. 17, Issue 1 https://doi.org/10.1186/s12864-016-2574-9	journal	March 2016
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales Castanera, Raúl; Pérez, Gúmer; López-Varas, Leticia BMC Genomics, Vol. 18, Issue 1 https://doi.org/10.1186/s12864-017-4243-z	journal	November 2017
A genetic linkage map of Pleurotus tuoliensis integrated with physical mapping of the de novo sequenced genome and the mating type loci Gao, Wei; Qu, Jibin; Zhang, Jinxia BMC Genomics, Vol. 19, Issue 1 https://doi.org/10.1186/s12864-017-4421-z	journal	January 2018
Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi Mäkinen, Mari; Kuuskeri, Jaana; Laine, Pia BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-019-5817-8	journal	May 2019
Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota) Kuuskeri, Jaana; Mäkelä, Miia R.; Isotalo, Jarkko BMC Microbiology, Vol. 15, Issue 1 https://doi.org/10.1186/s12866-015-0538-x	journal	October 2015
Fast solubilization of recalcitrant cellulosic biomass by the basidiomycete fungus Laetisaria arvalisinvolves successive secretion of oxidative and hydrolytic enzymes Navarro, David; Rosso, Marie-Noëlle; Haon, Mireille Biotechnology for Biofuels, Vol. 7, Issue 1 https://doi.org/10.1186/s13068-014-0143-5	journal	October 2014
Detoxification of 5-hydroxymethylfurfural by the Pleurotus ostreatus lignolytic enzymes aryl alcohol oxidase and dehydrogenase Feldman, Daria; Kowbel, David J.; Glass, N. Louise Biotechnology for Biofuels, Vol. 8, Issue 1 https://doi.org/10.1186/s13068-015-0244-9	journal	April 2015
Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus Couturier, Marie; Navarro, David; Chevret, Didier Biotechnology for Biofuels, Vol. 8, Issue 1 https://doi.org/10.1186/s13068-015-0407-8	journal	December 2015
Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system Zhu, Ning; Liu, Jiawen; Yang, Jinshui Biotechnology for Biofuels, Vol. 9, Issue 1 https://doi.org/10.1186/s13068-016-0461-x	journal	February 2016
A secretomic view of woody and nonwoody lignocellulose degradation by Pleurotus ostreatus Fernández-Fueyo, Elena; Ruiz-Dueñas, Francisco J.; López-Lucendo, María F. Biotechnology for Biofuels, Vol. 9, Issue 1 https://doi.org/10.1186/s13068-016-0462-9	journal	February 2016
Exploring glycoside hydrolases and accessory proteins from wood decay fungi to enhance sugarcane bagasse saccharification Valadares, Fernanda; Gonçalves, Thiago A.; Gonçalves, Dayelle S. P. O. Biotechnology for Biofuels, Vol. 9, Issue 1 https://doi.org/10.1186/s13068-016-0525-y	journal	May 2016
Oxidation of a non-phenolic lignin model compound by two Irpex lacteus manganese peroxidases: evidence for implication of carboxylate and radicals Qin, Xing; Sun, Xianhua; Huang, Huoqing Biotechnology for Biofuels, Vol. 10, Issue 1 https://doi.org/10.1186/s13068-017-0787-z	journal	April 2017
The yeast Geotrichum candidum encodes functional lytic polysaccharide monooxygenases Ladevèze, Simon; Haon, Mireille; Villares, Ana Biotechnology for Biofuels, Vol. 10, Issue 1 https://doi.org/10.1186/s13068-017-0903-0	journal	September 2017
Effects of cre1 modification in the white-rot fungus Pleurotus ostreatus PC9: altering substrate preference during biological pretreatment Yoav, Shahar; Salame, Tomer M.; Feldman, Daria Biotechnology for Biofuels, Vol. 11, Issue 1 https://doi.org/10.1186/s13068-018-1209-6	journal	July 2018
Grouping of multicopper oxidases in Lentinula edodes by sequence similarities and expression patterns Sakamoto, Yuichi; Nakade, Keiko; Yoshida, Kentaro AMB Express, Vol. 5, Issue 1 https://doi.org/10.1186/s13568-015-0151-2	journal	September 2015
Comprehensive investigation of a dye-decolorizing peroxidase and a manganese peroxidase from Irpex lacteus F17, a lignin-degrading basidiomycete Duan, Zihong; Shen, Rui; Liu, Binjie AMB Express, Vol. 8, Issue 1 https://doi.org/10.1186/s13568-018-0648-6	journal	July 2018
Transcriptomic profiling sheds light on the blue-light and red-light response of oyster mushroom (Pleurotus ostreatus) Wang, Huan; Tong, Xidan; Tian, Fenghua AMB Express, Vol. 10, Issue 1 https://doi.org/10.1186/s13568-020-0951-x	journal	January 2020
Draft genome sequence of fastidious pathogen Ceratobasidium theobromae, which causes vascular-streak dieback in Theobroma cacao Ali, Shahin S.; Asman, Asman; Shao, Jonathan Fungal Biology and Biotechnology, Vol. 6, Issue 1 https://doi.org/10.1186/s40694-019-0077-6	journal	September 2019
Enabling community-based metrology for wood-degrading fungi Perez, Rolando; Luccioni, Marina; Kamakaka, Rohinton Fungal Biology and Biotechnology, Vol. 7, Issue 1 https://doi.org/10.1186/s40694-020-00092-2	journal	March 2020
Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood Hori, Chiaki; Ishida, Takuya; Igarashi, Kiyohiko PLoS Genetics, Vol. 10, Issue 12 https://doi.org/10.1371/journal.pgen.1004759	journal	December 2014
Signature Wood Modifications Reveal Decomposer Community History Schilling, Jonathan S.; Kaffenberger, Justin T.; Liew, Feng Jin PLOS ONE, Vol. 10, Issue 3 https://doi.org/10.1371/journal.pone.0120679	journal	March 2015
Improving the Oxidative Stability of a High Redox Potential Fungal Peroxidase by Rational Design Sáez-Jiménez, Verónica; Acebes, Sandra; Guallar, Victor PLOS ONE, Vol. 10, Issue 4 https://doi.org/10.1371/journal.pone.0124750	journal	April 2015
The GSTome Reflects the Chemical Environment of White-Rot Fungi Deroy, Aurélie; Saiag, Fanny; Kebbi-Benkeder, Zineb PLOS ONE, Vol. 10, Issue 10 https://doi.org/10.1371/journal.pone.0137083	journal	October 2015
Saccharification of Lignocelluloses by Carbohydrate Active Enzymes of the White Rot Fungus Dichomitus squalens Rytioja, Johanna; Hildén, Kristiina; Mäkinen, Susanna PLOS ONE, Vol. 10, Issue 12 https://doi.org/10.1371/journal.pone.0145166	journal	December 2015
Interactions affect hyphal growth and enzyme profiles in combinations of coniferous wood-decaying fungi of Agaricomycetes Mali, Tuulia; Kuuskeri, Jaana; Shah, Firoz PLOS ONE, Vol. 12, Issue 9 https://doi.org/10.1371/journal.pone.0185171	journal	September 2017
New lipases by mining of Pleurotus ostreatus genome Piscitelli, Alessandra; Tarallo, Vincenzo; Guarino, Lucia PLOS ONE, Vol. 12, Issue 9 https://doi.org/10.1371/journal.pone.0185377	journal	September 2017
Discovery of microRNA-like RNAs during early fruiting body development in the model mushroom Coprinopsis cinerea Lau, Amy Yuet Ting; Cheng, Xuanjin; Cheng, Chi Keung PLOS ONE, Vol. 13, Issue 9 https://doi.org/10.1371/journal.pone.0198234	journal	September 2018
Drought increases the frequencies of fungal functional genes related to carbon and nitrogen acquisition Treseder, Kathleen K.; Berlemont, Renaud; Allison, Steven D. PLOS ONE, Vol. 13, Issue 11 https://doi.org/10.1371/journal.pone.0206441	journal	November 2018
Molecular fungal community and its decomposition activity in sapwood and heartwood of 13 temperate European tree species Leonhardt, Sabrina; Hoppe, Björn; Stengel, Elisa PLOS ONE, Vol. 14, Issue 2 https://doi.org/10.1371/journal.pone.0212120	journal	February 2019
Genome and secretome of Chondrostereum purpureum correspond to saprotrophic and phytopathogenic life styles Reina, Rocio; Kellner, Harald; Hess, Jaqueline PLOS ONE, Vol. 14, Issue 3 https://doi.org/10.1371/journal.pone.0212769	journal	March 2019
Expression patterns of two pal genes of Pleurotus ostreatus across developmental stages and under heat stress Hou, Ludan; Wang, Lining; Wu, Xiangli BMC Microbiology https://doi.org/10.21203/rs.2.9641/v3	journal	October 2019
Redefining the Subsurface Biosphere: Characterization of Fungi Isolated From Energy-Limited Marine Deep Subsurface Sediment Kiel Reese, Brandi; Sobol, Morgan S.; Bowles, Marshall Wayne Frontiers in Fungal Biology, Vol. 2 https://doi.org/10.3389/ffunb.2021.727543	journal	September 2021
Visual Comparative Omics of Fungi for Plant Biomass Deconstruction Miyauchi, Shingo; Navarro, David; Grigoriev, Igor V. Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.01335	journal	August 2016
Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins Garcia, Kevin; Ané, Jean-Michel Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.01734	journal	November 2016
A New Functional Classification of Glucuronoyl Esterases by Peptide Pattern Recognition Agger, Jane W.; Busk, Peter K.; Pilgaard, Bo Frontiers in Microbiology, Vol. 08 https://doi.org/10.3389/fmicb.2017.00309	journal	February 2017
Co-culturing of Fungal Strains Against Botrytis cinerea as a Model for the Induction of Chemical Diversity and Therapeutic Agents Serrano, Rachel; González-Menéndez, Víctor; Rodríguez, Lorena Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.00649	journal	April 2017
Reconstruction and Analysis of a Genome-Scale Metabolic Model of Ganoderma lucidum for Improved Extracellular Polysaccharide Production Ma, Zhongbao; Ye, Chao; Deng, Weiwei Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.03076	journal	December 2018
Pleurotus eryngii Genomes Reveal Evolution and Adaptation to the Gobi Desert Environment Dai, Yueting; Sun, Lei; Yin, Xiaolei Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.02024	journal	September 2019
Comparative Analysis of DNA Methyltransferase Gene Family in Fungi: A Focus on Basidiomycota Huang, Ruirui; Ding, Qiangqiang; Xiang, Yanan Frontiers in Plant Science, Vol. 7 https://doi.org/10.3389/fpls.2016.01556	journal	October 2016
Genome-Wide Characterization and Expression Analyses of Pleurotus ostreatus MYB Transcription Factors during Developmental Stages and under Heat Stress Based on de novo Sequenced Genome Wang, Lining; Gao, Wei; Wu, Xiangli International Journal of Molecular Sciences, Vol. 19, Issue 7 https://doi.org/10.3390/ijms19072052	journal	July 2018
Enzymatic Preparation of 2,5-Furandicarboxylic Acid (FDCA)—A Substitute of Terephthalic Acid—By the Joined Action of Three Fungal Enzymes Karich, Alexander; Kleeberg, Sebastian; Ullrich, René Microorganisms, Vol. 6, Issue 1 https://doi.org/10.3390/microorganisms6010005	journal	January 2018
Fungal Adaptation to the Advanced Stages of Wood Decomposition: Insights from the Steccherinum ochraceum Moiseenko, Konstantin V.; Glazunova, Olga A.; Shakhova, Natalia V. Microorganisms, Vol. 7, Issue 11 https://doi.org/10.3390/microorganisms7110527	journal	November 2019
Enzyme Activity Profiles Produced on Wood and Straw by Four Fungi of Different Decay Strategies Veloz Villavicencio, Eliana; Mali, Tuulia; Mattila, Hans K. Microorganisms, Vol. 8, Issue 1 https://doi.org/10.3390/microorganisms8010073	journal	January 2020
Hallmarks of Basidiomycete Soft- and White-Rot in Wood-Decay -Omics Data of Two Armillaria Species Sahu, Neha; Merényi, Zsolt; Bálint, Balázs Microorganisms, Vol. 9, Issue 1 https://doi.org/10.3390/microorganisms9010149	journal	January 2021
Systematic Analysis of the Pleurotus ostreatus Laccase Gene (PoLac) Family and Functional Characterization of PoLac2 Involved in the Degradation of Cotton-Straw Lignin Jiao, Xiaoyu; Li, Guoqing; Wang, Yan Molecules, Vol. 23, Issue 4 https://doi.org/10.3390/molecules23040880	journal	April 2018
A draft genome and transcriptome of common milkweed ( Asclepias syriaca ) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae Weitemier, Kevin; Straub, Shannon C. K.; Fishbein, Mark PeerJ, Vol. 7 https://doi.org/10.7717/peerj.7649	journal	January 2019
Defect detection in FRP-bonded structural system via phase-based motion magnification technique Qiu, Qiwen; Lau, Denvid Structural Control and Health Monitoring, Vol. 25, Issue 12 https://doi.org/10.1002/stc.2259	journal	October 2018
Plant Fungal Disease Management Using Nanobiotechnology as a Tool Álvarez, Sandra Pérez; López, Norma Elena Leyva; Lozano, Jesús Méndez Advances and Applications Through Fungal Nanobiotechnology https://doi.org/10.1007/978-3-319-42990-8_8	book	November 2016
Prolyl-specific peptidases for applications in food protein hydrolysis Mika, Nicole; Zorn, Holger; Rühl, Martin Applied Microbiology and Biotechnology, Vol. 99, Issue 19 https://doi.org/10.1007/s00253-015-6838-0	journal	August 2015
Comparative analysis of lignin peroxidase and manganese peroxidase activity on coniferous and deciduous wood using ToF-SIMS MacDonald, Jacqueline; Goacher, Robyn E.; Abou-Zaid, Mamdouh Applied Microbiology and Biotechnology, Vol. 100, Issue 18 https://doi.org/10.1007/s00253-016-7560-2	journal	May 2016
Biology, dynamics, and applications of transposable elements in basidiomycete fungi Castanera, Raúl; Borgognone, Alessandra; Pisabarro, Antonio G. Applied Microbiology and Biotechnology, Vol. 101, Issue 4 https://doi.org/10.1007/s00253-017-8097-8	journal	January 2017
Comparative mitogenomics reveals large-scale gene rearrangements in the mitochondrial genome of two Pleurotus species Li, Qiang; Chen, Cheng; Xiong, Chuan Applied Microbiology and Biotechnology, Vol. 102, Issue 14 https://doi.org/10.1007/s00253-018-9082-6	journal	May 2018
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613 Park, Hongjae; Min, Byoungnam; Jang, Yeongseon Applied Microbiology and Biotechnology, Vol. 103, Issue 19 https://doi.org/10.1007/s00253-019-10089-6	journal	September 2019
RiPEIP1, a gene from the arbuscular mycorrhizal fungus Rhizophagus irregularis, is preferentially expressed in planta and may be involved in root colonization Fiorilli, Valentina; Belmondo, Simone; Khouja, Hassine Radhouane Mycorrhiza, Vol. 26, Issue 6 https://doi.org/10.1007/s00572-016-0697-0	journal	April 2016
Fomitopsis betulina (formerly Piptoporus betulinus): the Iceman’s polypore fungus with modern biotechnological potential Pleszczyńska, Małgorzata; Lemieszek, Marta K.; Siwulski, Marek World Journal of Microbiology and Biotechnology, Vol. 33, Issue 5 https://doi.org/10.1007/s11274-017-2247-0	journal	April 2017
Microbial enzyme systems for lignin degradation and their transcriptional regulation Furukawa, Takanori; Bello, Fatai Olumide; Horsfall, Louise Frontiers in Biology, Vol. 9, Issue 6 https://doi.org/10.1007/s11515-014-1336-9	journal	November 2014
What is cultivated oyster mushroom? Phylogenetic and physiological study of Pleurotus ostreatus and related taxa Pánek, Matěj; Wiesnerová, Lucie; Jablonský, Ivan Mycological Progress, Vol. 18, Issue 9 https://doi.org/10.1007/s11557-019-01515-0	journal	September 2019
Notes, outline and divergence times of Basidiomycota He, Mao-Qiang; Zhao, Rui-Lin; Hyde, Kevin D. Fungal Diversity, Vol. 99, Issue 1 https://doi.org/10.1007/s13225-019-00435-4	journal	November 2019
Lytic xylan oxidases from wood-decay fungi unlock biomass degradation Couturier, Marie; Ladevèze, Simon; Sulzenbacher, Gerlind Nature Chemical Biology, Vol. 14, Issue 3 https://doi.org/10.1038/nchembio.2558	journal	January 2018
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum Peter, Martina; Kohler, Annegret; Ohm, Robin A. Nature Communications, Vol. 7, Issue 1 https://doi.org/10.1038/ncomms12662	journal	September 2016
Dimensions of biodiversity in the Earth mycobiome Peay, Kabir G.; Kennedy, Peter G.; Talbot, Jennifer M. Nature Reviews Microbiology, Vol. 14, Issue 7 https://doi.org/10.1038/nrmicro.2016.59	journal	June 2016
The fungus that came in from the cold: dry rot’s pre-adapted ability to invade buildings Balasundaram, S. V.; Hess, J.; Durling, M. B. The ISME Journal, Vol. 12, Issue 3 https://doi.org/10.1038/s41396-017-0006-8	journal	January 2018
Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi Wu, Baojun; Gaskell, Jill; Zhang, Jiwei The ISME Journal, Vol. 13, Issue 6 https://doi.org/10.1038/s41396-019-0359-2	journal	February 2019
Delayed fungal evolution did not cause the Paleozoic peak in coal production Nelsen, Matthew P.; DiMichele, William A.; Peters, Shanan E. Proceedings of the National Academy of Sciences, Vol. 113, Issue 9 https://doi.org/10.1073/pnas.1517943113	journal	January 2016
Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta Zhang, Jiwei; Presley, Gerald N.; Hammel, Kenneth E. Proceedings of the National Academy of Sciences, Vol. 113, Issue 39 https://doi.org/10.1073/pnas.1608454113	journal	September 2016
Characterization of cellulolytic enzyme system of Schizophyllum commune mutant and evaluation of its efficiency on biomass hydrolysis Sornlake, Warasirin; Rattanaphanjak, Phatcharamon; Champreda, Verawat Bioscience, Biotechnology, and Biochemistry, Vol. 81, Issue 7 https://doi.org/10.1080/09168451.2017.1320937	journal	May 2017
Microporotriol, a new cadinane-type sesquiterpenoid from the cultures of the wood-decay fungus Microporus affinis HFG829 Zhao, Zhen-Zhu; Liu, Ji-Kai; Chen, He-Ping Natural Product Research https://doi.org/10.1080/14786419.2019.1582038	journal	March 2019
Transposon-associated epigenetic silencing during Pleurotus ostreatus life cycle Borgognone, Alessandra; Castanera, Raúl; Morselli, Marco DNA Research, Vol. 25, Issue 5 https://doi.org/10.1093/dnares/dsy016	journal	June 2018
A Lab-Based Study of Temperate Forest Termite Impacts on Two Common Wood-Rot Fungi Martin, Jason S.; Bulmer, Mark S. Environmental Entomology https://doi.org/10.1093/ee/nvy122	journal	September 2018
Wood decomposition in aquatic and terrestrial ecosystems in the tropics: contrasting biotic and abiotic processes Jones, Jennifer M.; Heath, Katy D.; Ferrer, Astrid FEMS Microbiology Ecology, Vol. 95, Issue 1 https://doi.org/10.1093/femsec/fiy223	journal	November 2018
Lignin degradation: microorganisms, enzymes involved, genomes analysis and evolution Janusz, Grzegorz; Pawlik, Anna; Sulej, Justyna FEMS Microbiology Reviews, Vol. 41, Issue 6 https://doi.org/10.1093/femsre/fux049	journal	October 2017
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities Nagy, László G.; Riley, Robert; Tritt, Andrew Molecular Biology and Evolution, Vol. 33, Issue 4 https://doi.org/10.1093/molbev/msv337	journal	December 2015
Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution Nagy, László G.; Riley, Robert; Bergmann, Philip J. Molecular Biology and Evolution, Vol. 34, Issue 1 https://doi.org/10.1093/molbev/msw238	journal	November 2016
Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships Prasanna, Arun N.; Gerber, Daniel; Kijpornyongpan, Teeratas Systematic Biology https://doi.org/10.1093/sysbio/syz029	journal	May 2019
Comparative and population genomics landscape of Phellinus noxius: a hypervariable fungus causing root rot in trees Chung, Chia-Lin; Lee, Tracy J.; Akiba, Mitsuteru Molecular Ecology https://doi.org/10.1101/132712	posted_content	September 2017
Discovery of microRNA-like RNAs during early fruiting body development in the model mushroom Coprinopsis cinerea Lau, Amy Yuet Ting; Cheng, Xuanjin; Cheng, Chi Keung bioRxiv https://doi.org/10.1101/325217	posted_content	May 2018
Differential gene expression associated with fungal trophic shifts along the senescence gradient of the moss Dicranum scoparium Chen, Ko‐Hsuan; Liao, Hui‐Ling; Bellenger, Jean‐Philippe Environmental Microbiology, Vol. 21, Issue 7 https://doi.org/10.1111/1462-2920.14605	journal	April 2019
Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers Barbi, Florian; Kohler, Annegret; Barry, Kerrie Environmental Microbiology, Vol. 22, Issue 3 https://doi.org/10.1111/1462-2920.14873	journal	August 2019
Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life Dentinger, Bryn T. M.; Gaya, Ester; O'Brien, Heath Biological Journal of the Linnean Society, Vol. 117, Issue 1 https://doi.org/10.1111/bij.12553	journal	May 2015
Fungal functional ecology: bringing a trait‐based approach to plant‐associated fungi Zanne, Amy E.; Abarenkov, Kessy; Afkhami, Michelle E. Biological Reviews, Vol. 95, Issue 2 https://doi.org/10.1111/brv.12570	journal	November 2019
Temperature sensitivities of extracellular enzyme V _max and K _m across thermal environments Allison, Steven D.; Romero-Olivares, Adriana L.; Lu, Ying Global Change Biology, Vol. 24, Issue 7 https://doi.org/10.1111/gcb.14045	journal	February 2018
Scaling up: A guide to high-throughput genomic approaches for biodiversity analysis Porter, Teresita M.; Hajibabaei, Mehrdad Molecular Ecology, Vol. 27, Issue 2 https://doi.org/10.1111/mec.14478	journal	January 2018
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors Shah, Firoz; Nicolás, César; Bentzer, Johan New Phytologist, Vol. 209, Issue 4 https://doi.org/10.1111/nph.13722	journal	November 2015
Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates Looney, Brian P.; Meidl, Peter; Piatek, Marek J. New Phytologist, Vol. 218, Issue 1 https://doi.org/10.1111/nph.15001	journal	January 2018
Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae Almási, Éva; Sahu, Neha; Krizsán, Krisztina New Phytologist, Vol. 224, Issue 2 https://doi.org/10.1111/nph.16032	journal	June 2019
Extracellular electron transfer systems fuel cellulose oxidative degradation Kracher, D.; Scheiblbrandner, S.; Felice, A. K. G. Science, Vol. 352, Issue 6289 https://doi.org/10.1126/science.aaf3165	journal	April 2016
Transcriptome and Secretome Analyses of the Wood Decay Fungus Wolfiporia cocos Support Alternative Mechanisms of Lignocellulose Conversion Gaskell, Jill; Blanchette, Robert A.; Stewart, Philip E. Applied and Environmental Microbiology, Vol. 82, Issue 13 https://doi.org/10.1128/AEM.00639-16	journal	April 2016
Gene Expression Patterns of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium Are Influenced by Wood Substrate Composition during Degradation Skyba, Oleksandr; Cullen, Dan; Douglas, Carl J. Applied and Environmental Microbiology, Vol. 82, Issue 14 https://doi.org/10.1128/aem.00134-16	journal	May 2016
Unusual and Highly Bioactive Sesterterpenes Synthesized by Pleurotus ostreatus during Coculture with Trametes robiniophila Murr Shen, Xiao-Ting; Mo, Xu-Hua; Zhu, Li-Ping Applied and Environmental Microbiology, Vol. 85, Issue 14 https://doi.org/10.1128/aem.00293-19	journal	May 2019
Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola Wu, Baojun; Gaskell, Jill; Held, Benjamin W. Applied and Environmental Microbiology, Vol. 84, Issue 16 https://doi.org/10.1128/aem.00991-18	journal	June 2018
Oxidative Damage Control during Decay of Wood by Brown Rot Fungus Using Oxygen Radicals Castaño, Jesus D.; Zhang, Jiwei; Anderson, Claire E. Applied and Environmental Microbiology, Vol. 84, Issue 22 https://doi.org/10.1128/aem.01937-18	journal	September 2018
A Highly Diastereoselective Oxidant Contributes to Ligninolysis by the White Rot Basidiomycete Ceriporiopsis subvermispora Yelle, Daniel J.; Kapich, Alexander N.; Houtman, Carl J. Applied and Environmental Microbiology, Vol. 80, Issue 24 https://doi.org/10.1128/aem.02111-14	journal	September 2014
pH-Dependent Relationship between Catalytic Activity and Hydrogen Peroxide Production Shown via Characterization of a Lytic Polysaccharide Monooxygenase from Gloeophyllum trabeum Hegnar, Olav A.; Petrovic, Dejan M.; Bissaro, Bastien Applied and Environmental Microbiology, Vol. 85, Issue 5 https://doi.org/10.1128/aem.02612-18	journal	December 2018
Distinct Growth and Secretome Strategies for Two Taxonomically Divergent Brown Rot Fungi Presley, Gerald N.; Schilling, Jonathan S. Applied and Environmental Microbiology, Vol. 83, Issue 7 https://doi.org/10.1128/aem.02987-16	journal	January 2017
Lentinula edodes Genome Survey and Postharvest Transcriptome Analysis Sakamoto, Yuichi; Nakade, Keiko; Sato, Shiho Applied and Environmental Microbiology, Vol. 83, Issue 10 https://doi.org/10.1128/aem.02990-16	journal	March 2017
Fungal Traits That Drive Ecosystem Dynamics on Land Treseder, Kathleen K.; Lennon, Jay T. Microbiology and Molecular Biology Reviews, Vol. 79, Issue 2 https://doi.org/10.1128/mmbr.00001-15	journal	May 2015
Oxidoreductases and Reactive Oxygen Species in Conversion of Lignocellulosic Biomass Bissaro, Bastien; Várnai, Anikó; Røhr, Åsmund K. Microbiology and Molecular Biology Reviews, Vol. 82, Issue 4 https://doi.org/10.1128/mmbr.00029-18	journal	September 2018
Plant-Polysaccharide-Degrading Enzymes from Basidiomycetes Rytioja, Johanna; Hildén, Kristiina; Yuzon, Jennifer Microbiology and Molecular Biology Reviews, Vol. 78, Issue 4 https://doi.org/10.1128/mmbr.00035-14	journal	November 2014
Identification and Characterization of Small Noncoding RNAs in Genome Sequences of the Edible Fungus Pleurotus ostreatus Qu, Jibin; Zhao, Mengran; Hsiang, Tom BioMed Research International, Vol. 2016 https://doi.org/10.1155/2016/2503023	journal	January 2016
Brown Rot-Type Fungal Decomposition of Sorghum Bagasse: Variable Success and Mechanistic Implications Presley, Gerald N.; Ndimba, Bongani K.; Schilling, Jonathan S. International Journal of Microbiology, Vol. 2018 https://doi.org/10.1155/2018/4961726	journal	January 2018
Decay of softwood in archaeological wooden artifacts El Hadidi, Nesrin M. N. Studies in Conservation, Vol. 62, Issue 2 https://doi.org/10.1179/2047058415y.0000000028	journal	March 2016
Evolutionary dynamics of host specialization in wood-decay fungi Krah, Franz-Sebastian; Bässler, Claus; Heibl, Christoph BMC Evolutionary Biology, Vol. 18, Issue 1 https://doi.org/10.1186/s12862-018-1229-7	journal	August 2018
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens Morales-Cruz, Abraham; Amrine, Katherine C. H.; Blanco-Ulate, Barbara BMC Genomics, Vol. 16, Issue 1 https://doi.org/10.1186/s12864-015-1624-z	journal	June 2015
Expansion and diversification of the MSDIN family of cyclic peptide genes in the poisonous agarics Amanita phalloides and A. bisporigera Pulman, Jane A.; Childs, Kevin L.; Sgambelluri, R. Michael BMC Genomics, Vol. 17, Issue 1 https://doi.org/10.1186/s12864-016-3378-7	journal	December 2016
The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer-degrading enzymes Gupta, Deepak K.; Rühl, Martin; Mishra, Bagdevi BMC Genomics, Vol. 19, Issue 1 https://doi.org/10.1186/s12864-017-4430-y	journal	January 2018
Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus Min, Byoungnam; Kim, Seunghwan; Oh, Youn-Lee BMC Genomics, Vol. 19, Issue 1 https://doi.org/10.1186/s12864-018-5159-y	journal	November 2018
Genome of lethal Lepiota venenata and insights into the evolution of toxin-biosynthetic genes Lüli, Yunjiao; Cai, Qing; Chen, Zuo H. BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-019-5575-7	journal	March 2019
Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose Kuuskeri, Jaana; Häkkinen, Mari; Laine, Pia Biotechnology for Biofuels, Vol. 9, Issue 1 https://doi.org/10.1186/s13068-016-0608-9	journal	September 2016
Role of surface tryptophan for peroxidase oxidation of nonphenolic lignin Sáez-Jiménez, Verónica; Rencoret, Jorge; Rodríguez-Carvajal, Miguel Angel Biotechnology for Biofuels, Vol. 9, Issue 1 https://doi.org/10.1186/s13068-016-0615-x	journal	September 2016
Deciphering lignocellulose deconstruction by the white rot fungus Irpex lacteus based on genomic and transcriptomic analyses Qin, Xing; Su, Xiaoyun; Luo, Huiying Biotechnology for Biofuels, Vol. 11, Issue 1 https://doi.org/10.1186/s13068-018-1060-9	journal	March 2018
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass Miyauchi, Shingo; Rancon, Anaïs; Drula, Elodie Biotechnology for Biofuels, Vol. 11, Issue 1 https://doi.org/10.1186/s13068-018-1198-5	journal	July 2018
Hypoxia is regulating enzymatic wood decomposition and intracellular carbohydrate metabolism in filamentous white rot fungus Mattila, Hans Kristian; Mäkinen, Mari; Lundell, Taina Biotechnology for Biofuels, Vol. 13, Issue 1 https://doi.org/10.1186/s13068-020-01677-0	journal	February 2020
Molecular characterization and overexpression of mnp6 and vp3 from Pleurotus ostreatus revealed their involvement in biodegradation of cotton stalk lignin Wang, Yan; Li, Guoqing; Jiao, Xiaoyu Biology Open, Vol. 8, Issue 2 https://doi.org/10.1242/bio.036483	journal	December 2018
Several Genes Encoding Enzymes with the Same Activity Are Necessary for Aerobic Fungal Degradation of Cellulose in Nature Busk, Peter K.; Lange, Mette; Pilgaard, Bo PLoS ONE, Vol. 9, Issue 12 https://doi.org/10.1371/journal.pone.0114138	journal	December 2014
Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation Chen, Lianfu; Gong, Yuhua; Cai, Yingli PLOS ONE, Vol. 11, Issue 8 https://doi.org/10.1371/journal.pone.0160336	journal	August 2016
The wood decay fungus Cerrena unicolor adjusts its metabolism to grow on various types of wood and light conditions Pawlik, Anna; Ruminowicz-Stefaniuk, Marta; Frąc, Magdalena PLOS ONE, Vol. 14, Issue 2 https://doi.org/10.1371/journal.pone.0211744	journal	February 2019
Fungal genome sequencing: basic biology to biotechnology Sharma, Krishna Kant Critical Reviews in Biotechnology https://doi.org/10.3109/07388551.2015.1015959	journal	February 2015
Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins Pellegrin, Clement; Morin, Emmanuelle; Martin, Francis M. Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.01278	journal	November 2015
Evolutionary Relationships Between the Laccase Genes of Polyporales: Orthology-Based Classification of Laccase Isozymes and Functional Insight From Trametes hirsuta Savinova, Olga S.; Moiseenko, Konstantin V.; Vavilova, Ekaterina A. Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.00152	journal	February 2019
An Italian Research Culture Collection of Wood Decay Fungi Girometta, Carolina Elena; Bernicchia, Annarosa; Baiguera, Rebecca Michela Diversity, Vol. 12, Issue 2 https://doi.org/10.3390/d12020058	journal	February 2020
Initial Rhodonia placenta Gene Expression in Acetylated Wood: Group-Wise Upregulation of Non-Enzymatic Oxidative Wood Degradation Genes Depending on the Treatment Level Kölle, Martina; Ringman, Rebecka; Pilgård, Annica Forests, Vol. 10, Issue 12 https://doi.org/10.3390/f10121117	journal	December 2019
Comparative Proteomic Analysis of Pleurotus ostreatus Reveals Great Metabolic Differences in the Cap and Stipe Development and the Potential Role of Ca2+ in the Primordium Differentiation Zhu, Weiwei; Hu, Jinbo; Li, Yang International Journal of Molecular Sciences, Vol. 20, Issue 24 https://doi.org/10.3390/ijms20246317	journal	December 2019
Unveiling of Concealed Processes for the Degradation of Pharmaceutical Compounds by Neopestalotiopsis sp. Kang, Bo Ram; Kim, Min Sung; Lee, Tae Kwon Microorganisms, Vol. 7, Issue 8 https://doi.org/10.3390/microorganisms7080264	journal	August 2019
Mycoextraction: Rapid Cadmium Removal by Macrofungi-Based Technology from Alkaline Soil Chen, Miaomiao; Wang, Likun; Hou, Junliang Minerals, Vol. 8, Issue 12 https://doi.org/10.3390/min8120589	journal	December 2018
Two new species of Amanita sect. Phalloideae from Africa, one of which is devoid of amatoxins and phallotoxins Fraiture, André; Amalfi, Mario; Raspé, Olivier MycoKeys, Vol. 53 https://doi.org/10.3897/mycokeys.53.34560	journal	June 2019
Oxidized demethylated lignin as a bio-based adhesive for wood bonding Chen, Xinyi; Xi, Xuedong; Pizzi, Antonio Taylor & Francis https://doi.org/10.6084/m9.figshare.11627937	text	January 2020
Oxidized demethylated lignin as a bio-based adhesive for wood bonding Chen, Xinyi; Xi, Xuedong; Pizzi, Antonio Taylor & Francis https://doi.org/10.6084/m9.figshare.11627937.v1	text	January 2020
Fungal genome sequencing: basic biology to biotechnology Sharma, Krishna Kant Taylor & Francis https://doi.org/10.6084/m9.figshare.1568869	text	January 2015
Fungal genome sequencing: basic biology to biotechnology Sharma, Krishna Kant Taylor & Francis https://doi.org/10.6084/m9.figshare.1568869.v1	text	January 2015
Characterization of cellulolytic enzyme system of Schizophyllum commune mutant and evaluation of its efficiency on biomass hydrolysis Sornlake, Warasirin; Rattanaphanjak, Phatcharamon; Champreda, Verawat Taylor & Francis https://doi.org/10.6084/m9.figshare.4991489.v1	text	January 2017
Comparative study of genome-wide plant biomass-degrading CAZymes in white rot, brown rot and soft rot fungi Kameshwar, Ayyappa Kumar Sista; Qin, Wensheng Taylor & Francis https://doi.org/10.6084/m9.figshare.6741647	text	January 2018
Comparative study of genome-wide plant biomass-degrading CAZymes in white rot, brown rot and soft rot fungi Kameshwar, Ayyappa Kumar Sista; Qin, Wensheng Taylor & Francis https://doi.org/10.6084/m9.figshare.6741647.v1	text	January 2018
Enzymatic characterization of an extracellular glucoamylase from Tricholoma matsutake and its cloning and secretory expression in Pichia pastoris Onuma, Hiroki; Uchiyama, Hiroto; Hara, Kento Taylor & Francis https://doi.org/10.6084/m9.figshare.6982463	text	January 2018

Similar Records

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white rot/ brown rot paradigm for wood decay fungi

Conference · Fri Mar 14 00:00:00 EDT 2014 · OSTI ID:1241198

Comparative genome analysis of Basidiomycete fungi

Conference · Wed Aug 07 00:00:00 EDT 2013 · OSTI ID:1241232

Related Subjects

54 ENVIRONMENTAL SCIENCES
59 BASIC BIOLOGICAL SCIENCES
bioenergy
lignocellulose
phylogenomics

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

Citation Formats

References (95)

Cited By (161)

Similar Records

Related Subjects