Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Analytical nuclear gradients for the range-separated many-body dispersion model of noncovalent interactions

Journal Article · · Chemical Science
DOI:https://doi.org/10.1039/c5sc03234b· OSTI ID:1467449
 [1];  [2];  [3];  [4];  [2]
  1. Harvard Univ., Cambridge, MA (United States). Dept. of Chemistry and Chemical Biology; Harvard University
  2. Harvard Univ., Cambridge, MA (United States). Dept. of Chemistry and Chemical Biology
  3. Harvard Univ., Cambridge, MA (United States). Dept. of Chemistry; Cornell Univ., Ithaca, NY (United States). Dept. of Chemistry and Chemical Biology
  4. Harvard Univ., Cambridge, MA (United States). Dept. of Chemistry; Princeton Univ., NJ (United States). Princeton Inst. for the Science and Technology of Materials, Dept. of Physics, and Program in Applied and Computational Mathematics

An accurate treatment of the long-range electron correlation energy, including van der Waals (vdW) or dispersion interactions, is essential for describing the structure, dynamics, and function of a wide variety of systems. Among the most accurate models for including dispersion into density functional theory (DFT) is the range-separated many-body dispersion (MBD) method [A. Ambrosetti et al., J. Chem. Phys., 2014, 140, 18A508], in which the correlation energy is modeled at short-range by a semi-local density functional and at long-range by a model system of coupled quantum harmonic oscillators. In this work, we develop analytical gradients of the MBD energy with respect to nuclear coordinates, including all implicit coordinate dependencies arising from the partitioning of the charge density into Hirshfeld effective volumes. To demonstrate the efficiency and accuracy of these MBD gradients for geometry optimizations of systems with intermolecular and intramolecular interactions, we optimized conformers of the benzene dimer and isolated small peptides with aromatic side-chains. We find excellent agreement with the wavefunction theory reference geometries of these systems (at a fraction of the computational cost) and find that MBD consistently outperforms the popular TS and D3(BJ) dispersion corrections. To demonstrate the performance of the MBD model on a larger system with supramolecular interactions, we optimized the C60@C60H28 buckyball catcher host–guest complex. In our analysis, we also find that neglecting the implicit nuclear coordinate dependence arising from the charge density partitioning, as has been done in prior numerical treatments, leads to an unacceptable error in the MBD forces, with relative errors of ~20% (on average) that can extend well beyond 100%.

Research Organization:
Princeton Univ., NJ (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR) (SC-21)
Grant/Contract Number:
SC0008626
OSTI ID:
1467449
Journal Information:
Chemical Science, Journal Name: Chemical Science Journal Issue: 3 Vol. 7; ISSN 2041-6520; ISSN CSHCBM
Publisher:
Royal Society of ChemistryCopyright Statement
Country of Publication:
United States
Language:
English

References (134)

Inclusion complexes of buckycatcher with C60 and C70 journal January 2010
Many-body van der Waals interactions in molecules and condensed matter journal May 2014
Electronic Properties of Molecules and Surfaces with a Self-Consistent Interatomic van der Waals Density Functional journal April 2015
Studies on the Relationship Between Lymphocytosis and Bovine Leukosis1 book January 1969
Molecular Electronic-Structure Theory book August 2000
Many-Body Dispersion Interactions in Molecular Crystal Polymorphism journal May 2013
Supramolecular Binding Thermodynamics by Dispersion-Corrected Density Functional Theory journal July 2012
Accurate description of van der Waals complexes by density functional theory including empirical corrections journal January 2004
Semiempirical GGA-type density functional constructed with a long-range dispersion correction journal January 2006
Density functional theory augmented with an empirical dispersion term. Interaction energies and geometries of 80 noncovalent complexes compared with ab initio quantum mechanics calculations journal January 2007
Effect of the damping function in dispersion corrected density functional theory journal March 2011
Bonded-atom fragments for describing molecular charge densities journal January 1977
Self-consistent molecular Hartree—Fock—Slater calculations I. The computational procedure journal September 1973
Molecular polarizabilities calculated with a modified dipole interaction journal August 1981
RI-MP2: optimized auxiliary basis sets and demonstration of efficiency journal September 1998
Ab initio molecular simulations with numeric atom-centered orbitals journal November 2009
On the T-shaped structures of the benzene dimer journal April 2007
Coupled cluster calculations of interaction energies in benzene–fluorobenzene van der Waals complexes journal June 2007
High accuracy benchmark calculations on the benzene dimer potential energy surface journal October 2007
Implementation and validation of DFT-D for molecular vibrations and dynamics: The benzene dimer as a case study journal February 2008
Accurate treatment of van der Waals interactions using standard density functional theory methods with effective core-type potentials: Application to carbon-containing dimers journal April 2008
Computing dispersion interactions in density functional theory journal February 2010
Ab Initio Molecular Dynamics book January 2009
Understanding Molecular Crystals with Dispersion-Inclusive Density Functional Theory: Pairwise Corrections and Beyond journal June 2014
Stabilization and Structure Calculations for Noncovalent Interactions in Extended Molecular Systems Based on Wave Function and Density Functional Theories journal September 2010
Dispersion Interactions with Density-Functional Theory: Benchmarking Semiempirical and Interatomic Pairwise Corrected Density Functionals journal October 2011
Comprehensive Benchmarking of a Density-Dependent Dispersion Correction journal October 2011
Efficient Calculations of Dispersion Energies for Nanoscale Systems from Coupled Density Response Functions journal May 2012
First-Principles Modeling of Non-Covalent Interactions in Supramolecular Systems: The Role of Many-Body Effects journal October 2012
Benchmarking of London Dispersion-Accounting Density Functional Theory Methods on Very Large Molecular Complexes journal February 2013
Benzene Dimer: High-Level Wave Function and Density Functional Theory Calculations journal October 2008
van der Waals Interactions in Density-Functional Theory: Intermolecular Complexes journal March 2010
New structure for the most stable isomer of the benzene dimer: a quantum chemical study journal April 1993
van der Waals Volumes and Radii journal March 1964
Potential Energy Surface of the Benzene Dimer: Ab Initio Theoretical Study journal April 1994
Origin of Attraction and Directionality of the π/π Interaction:  Model Chemistry Calculations of Benzene Dimer Interaction journal January 2002
Estimates of the Ab Initio Limit for π−π Interactions:  The Benzene Dimer journal September 2002
A Double Concave Hydrocarbon Buckycatcher journal April 2007
Highly Accurate Coupled Cluster Potential Energy Curves for the Benzene Dimer:  Sandwich, T-Shaped, and Parallel-Displaced Configurations journal November 2004
Beyond the Benzene Dimer:  An Investigation of the Additivity of π−π Interactions journal November 2005
Potential Energy Surface for the Benzene Dimer and Perturbational Analysis of π−π Interactions journal August 2006
Understanding of Assembly Phenomena by Aromatic−Aromatic Interactions:  Benzene Dimer and the Substituted Systems journal May 2007
Thermodynamics of Host–Guest Interactions between Fullerenes and a Buckycatcher journal October 2014
Interactions in Large, Polyaromatic Hydrocarbon Dimers: Application of Density Functional Theory with Dispersion Corrections journal October 2008
Theoretical Study of Dispersion Binding of Hydrocarbon Molecules to Hydrogen-Terminated Silicon(100)-2×1 journal March 2009
An Assessment of Theoretical Methods for Nonbonded Interactions: Comparison to Complete Basis Set Limit Coupled-Cluster Potential Energy Curves for the Benzene Dimer, the Methane Dimer, Benzene−Methane, and Benzene−H 2 S journal September 2009
Potential Energy Surface for the Benzene Dimer. Results of ab Initio CCSD(T) Calculations Show Two Nearly Isoenergetic Structures:  T-Shaped and Parallel-Displaced journal January 1996
The Equilibrium Structure of Benzene journal April 2000
Many-Body van der Waals Interactions between Graphitic Nanostructures journal April 2010
A (Nearly) Universally Applicable Method for Modeling Noncovalent Interactions Using B3LYP journal June 2012
Seamless and Accurate Modeling of Organic Molecular Materials journal March 2013
Hard Numbers for Large Molecules: Toward Exact Energetics for Supramolecular Systems journal February 2014
Non-additivity of molecule-surface van der Waals potentials from force measurements journal November 2014
Quantum Chemical Approach to Estimating the Thermodynamics of Metabolic Reactions journal November 2014
An unsolvated buckycatcher and its first dianion journal January 2014
Computational design of molecules for an all-quinone redox flow battery journal January 2015
van der Waals dispersion interactions in molecular materials: beyond pairwise additivity journal January 2015
Calculation of intermolecular interactions in the benzene dimer using coupled-cluster and local electron correlation methods journal January 2006
Computational characterization and modeling of buckyball tweezers: density functional study of concave–convex π⋯π interactions journal January 2008
Benchmark database on isolated small peptides containing an aromatic side chain: comparison between wave function and density functional theory methods and empirical force field journal January 2008
Long-range corrected hybrid density functionals with damped atom–atom dispersion corrections journal January 2008
Investigating inclusion complexes using quantum chemical methods journal January 2012
Theoretical characterization of existing and new fullerene receptors journal January 2013
Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-theory based treatment journal March 2001
Towards extending the applicability of density functional theory to weakly bound systems journal November 2001
Empirical correction to density functional theory for van der Waals interactions journal January 2002
Interaction of the van der Waals Type Between Three Atoms journal June 1943
Exchange-hole dipole moment and the dispersion interaction journal April 2005
A post-Hartree–Fock model of intermolecular interactions journal July 2005
A density-functional model of the dispersion interaction journal October 2005
Intermolecular potentials based on symmetry-adapted perturbation theory with dispersion energies from time-dependent density-functional calculations journal December 2005
Exchange-hole dipole moment and the dispersion interaction: High-order dispersion coefficients journal January 2006
Many-body effects of dispersion interaction journal August 2006
A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions journal November 2006
Critical analysis and extension of the Hirshfeld atoms in molecules journal April 2007
A unified density-functional treatment of dynamical, nondynamical, and dispersion correlations journal September 2007
Exchange-hole dipole moment and the dispersion interaction revisited journal October 2007
Investigation of the benzene-dimer potential energy surface: DFT/CCSD(T) correction scheme journal March 2008
Accurate and efficient calculation of van der Waals interactions within density functional theory by local atomic potential approach journal October 2008
An efficient algorithm for the density-functional theory treatment of dispersion interactions journal March 2009
Dispersion-corrected Mo̸ller–Plesset second-order perturbation theory journal January 2009
Density functional method including weak interactions: Dispersion coefficients based on the local response approximation journal December 2009
A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu journal April 2010
Two- and three-body interatomic dispersion energy contributions to binding in molecules and solids journal June 2010
Local response dispersion method. II. Generalized multicenter interactions journal November 2010
Nonlocal van der Waals density functional: The simpler the better journal December 2010
On some approximations in applications of X α theory journal October 1979
Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen journal January 1989
Floppy structure of the benzene dimer: Ab initio calculation on the structure and dipole moment journal October 1990
The rotational spectrum, structure and dynamics of a benzene dimer journal March 1993
Polarizability and volume journal March 1993
A quantum chemistry study of benzene dimer journal August 1996
A benchmark for non-covalent interactions in solids journal August 2012
Perspective: Advances and challenges in treating van der Waals dispersion forces in density functional theory journal September 2012
Interatomic methods for the dispersion energy derived from the adiabatic connection fluctuation-dissipation theorem journal February 2013
Understanding the role of vibrations, exact exchange, and many-body van der Waals interactions in the cohesive properties of molecular crystals journal July 2013
Van der Waals interactions in density functional theory by combining the quantum harmonic oscillator-model with localized Wannier functions journal August 2013
Long-range correlation energy calculated from coupled atomic response functions journal May 2014
Perspective: Fifty years of density-functional theory in chemical physics journal May 2014
Consistent structures and interactions by density functional theory with small atomic orbital basis sets journal August 2015
Collective many-body van der Waals interactions in molecular systems journal August 2012
Information theory, atoms in molecules, and molecular similarity journal August 2000
The theory of the cohesive energies of solids journal January 1987
The Theory of Intermolecular Forces book January 2013
Padé-Approximant Calculation of the Nonretarded van der Waals Coefficients for Two and Three Helium Atoms journal July 1968
Note on an Approximation Treatment for Many-Electron Systems journal October 1934
The Influence of Retardation on the London-van der Waals Forces journal February 1948
Pseudopotentials that work: From H to Pu journal October 1982
Optimally smooth norm-conserving pseudopotentials journal December 1985
Fluctuation attraction in condensed matter: A nonlocal functional approach journal August 1991
Higher-accuracy van der Waals density functional journal August 2010
Nonlocal van der Waals density functional made simple and efficient journal January 2013
Van der Waals Interactions in DFT Made Easy by Wannier Functions journal February 2008
Accurate Molecular Van Der Waals Interactions from Ground-State Electron Density and Free-Atom Reference Data journal February 2009
Nonlocal van der Waals Density Functional Made Simple journal August 2009
Efficient Implementation of a van der Waals Density Functional: Application to Double-Wall Carbon Nanotubes journal August 2009
Unraveling the Stability of Polypeptide Helices: Critical Role of van der Waals Interactions journal March 2011
van der Waals Bonding in Layered Compounds from Advanced Density-Functional First-Principles Calculations journal June 2012
Accurate and Efficient Method for Many-Body van der Waals Interactions journal June 2012
Soft Collective Fluctuations Governing Hydrophobic Association journal September 2013
Role of Dispersion Interactions in the Polymorphism and Entropic Stabilization of the Aspirin Crystal journal July 2014
Electronic Properties of Molecules and Surfaces with a Self-Consistent Interatomic van der Waals Density Functional journal April 2015
Norm-Conserving Pseudopotentials journal November 1979
Simultaneous Relaxation of Nuclear Geometries and Electric Charge Densities in Electronic Structure Theories journal May 1983
van der Waals Interactions in Density-Functional Theory journal January 1996
Constraint Satisfaction in Local and Gradient Susceptibility Approximations: Application to a van der Waals Density Functional journal March 1996
Generalized Gradient Approximation Made Simple journal October 1996
Generalized Gradient Approximation Made Simple [Phys. Rev. Lett. 77, 3865 (1996)] journal February 1997
Van der Waals Density Functional for General Geometries journal June 2004
Optimization of Effective Atom Centered Potentials for London Dispersion Forces in Density Functional Theory journal October 2004
XSEDE: Accelerating Scientific Discovery journal September 2014
Bond Lengths in Free Molecules of Buckminsterfullerene, C60, from Gas-Phase Electron Diffraction journal October 1991
Van der Waals Interactions Between Organic Adsorbates and at Organic/Inorganic Interfaces journal June 2010
Simplified calculation of eigenvector derivatives journal September 1976

Cited By (14)

First-principles modeling of molecular crystals: structures and stabilities, temperature and pressure: First-principles modeling of molecular crystals
  • Hoja, Johannes; Reilly, Anthony M.; Tkatchenko, Alexandre
  • Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 7, Issue 1 https://doi.org/10.1002/wcms.1294
journal December 2016
First-principles stability ranking of molecular crystal polymorphs with the DFT+MBD approach journal January 2018
Theory and practice of modeling van der Waals interactions in electronic-structure calculations journal January 2019
Communication: Charge-population based dispersion interactions for molecules and materials journal April 2016
Non-covalent interactions across organic and biological subsets of chemical space: Physics-based potentials parametrized from machine learning journal June 2018
Geometry optimisations with a nonlocal density-functional theory method based on a double Hirshfeld partitioning journal July 2018
Isotope effects in liquid water via deep potential molecular dynamics journal October 2019
Advanced capabilities for materials modelling with Quantum ESPRESSO journal October 2017
Reliable and practical computational description of molecular crystal polymorphs journal January 2019
Advanced capabilities for materials modelling with Quantum ESPRESSO text January 2017
Communication: Charge-Population Based Dispersion Interactions for Molecules and Materials text January 2016
Advanced capabilities for materials modelling with Quantum ESPRESSO text January 2017
Non-covalent interactions across organic and biological subsets of chemical space: Physics-based potentials parametrized from machine learning text January 2017
Isotope Effects in Liquid Water via Deep Potential Molecular Dynamics text January 2019

Similar Records

Many-body dispersion effects in the binding of adsorbates on metal surfaces
Journal Article · Mon Sep 14 00:00:00 EDT 2015 · Journal of Chemical Physics · OSTI ID:22490878

Assessing Electronic Structure Methods for Long-Range Three-Body Dispersion Interactions: Analysis and Calculations on Well-Separated Metal Atom Trimers
Journal Article · Mon Jun 24 00:00:00 EDT 2019 · Journal of Chemical Theory and Computation · OSTI ID:1779227

First-Principles Modeling of Non-Covalent Interactions in Supramolecular Systems: The Role of Many-Body Effects
Journal Article · Thu Oct 18 00:00:00 EDT 2012 · Journal of Chemical Theory and Computation · OSTI ID:1564977