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Title: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Journal Article · · Nature Biotechnology
DOI:https://doi.org/10.1038/nbt0218-196a· OSTI ID:1459401
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  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  2. Bigelow Lab for Ocean Sciences, East Boothbay, ME (United States)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); United States Dept. of Agriculture, Gainesville, FL (United States)
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Merced, CA (United States)
  5. Broad Institute, Cambridge, MA (United States)
  6. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  7. European Molecular Biology Lab, Heidelberg (Germany)
  8. The Jackson Lab. for Genomic Medicine, Farmington, CT (United States)
  9. Michigan State Univ., East Lansing, MI (United States)
  10. California State Univ., San Bernardino, CA (United States)
  11. J. Craig Venter Institute, San Diego, CA (United States)
  12. J. Craig Venter Institute, Rockville, MD (United States)
  13. Max Planck Institute for Marine Microbiology, Bremen (Germany)
  14. Argonne National Lab. (ANL), Argonne, IL (United States); Univ. of Chicago, Chicago, IL (United States)
  15. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
  16. Univ. of British Columbia, Vancouver, BC (Canada)
  17. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of Southern California, Los Angeles, CA (United States)
  18. Uppsala Univ., Uppsala (Sweden)
  19. Univ. of Vermont Cancer Center, Burlington, VT (United States)
  20. Georgia Inst. of Technology, Atlanta, GA (United States)
  21. Univ. of Illinois Urbana-Champaign, Urbana, IL (United States)
  22. Univ. of Texas-Austin, Austin, TX (United States)
  23. Univ. of Vienna, Vienna (Austria)
  24. Univ. of California, Davis, CA (United States)
  25. Univ. of Nevada, Las Vegas, NV (United States)
  26. Univ. of Wisconsin-Madison, Madison, WI (United States)
  27. Univ. of Colorado, Boulder, CO (United States)
  28. Univ. of California San Diego, La Jolla, CA (United States)
  29. Welcome Trust Genome Campus, Cambridge (United Kingdom)
  30. National Institutes of Health, Bethesda, MD (United States)
  31. The Univ. of Queensland, Queensland (Australia)
  32. St. Petersburg State Univ., St. Petersburg (Russia)
  33. Argonne National Lab. (ANL), Argonne, IL (United States)
  34. Knapp Center for Biomedical Discovery, Chicago, IL (United States)
  35. National Cancer Institute, Frederick, MD (United States)
  36. Univ. of California, Berkeley, CA (United States)
+ Show Author Affiliations

Here, we present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome- Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1459401
Journal Information:
Nature Biotechnology, Vol. 36, Issue 2; ISSN 1087-0156
Publisher:
Springer NatureCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 1 work
Citation information provided by
Web of Science

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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea journal August 2017
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Cited By (32)

BOARD INVITED REVIEW: The pig microbiota and the potential for harnessing the power of the microbiome to improve growth and health1 journal June 2019
Anaerobic hydrocarbon degradation in candidate phylum ‘Atribacteria’ (JS1) inferred from genomics journal June 2019
The known and the unknown in soil microbial ecology journal January 2019
Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods journal January 2020
Minimum Information about an Uncultivated Virus Genome (MIUViG) journal December 2018
A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.) journal October 2018
Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere journal November 2019
Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments journal November 2018
Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea journal October 2019
Substantial expansion of the human gut microbiota genome catalogue journal March 2019
Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes journal August 2019
An integrated respiratory microbial gene catalogue to better understand the microbial aetiology of Mycoplasma pneumoniae pneumonia journal July 2019
Computational Framework for High-Quality Production and Large-Scale Evolutionary Analysis of Metagenome Assembled Genomes journal October 2019
A comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog journal January 2021
Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons journal October 2019
Advantages and Limits of Metagenomic Assembly and Binning of a Giant Virus journal June 2020
New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters journal February 2020
A pipeline for targeted metagenomics of environmental bacteria journal February 2020
Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage journal August 2021
Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages journal September 2019
An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome text January 2020
Roadmap for naming uncultivated archaea and bacteria text January 2020
MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries journal August 2019
Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs journal October 2017
Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments journal December 2018
Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species journal March 2019
An Expanded Ribosomal Phylogeny of Cyanobacteria Supports a Deep Placement of Plastids journal July 2019
Evaluation of the Microba Community Profiler for Taxonomic Profiling of Metagenomic Datasets From the Human Gut Microbiome journal April 2021
New Insights into the Ecology and Physiology of Methanomassiliicoccales from Terrestrial and Aquatic Environments journal December 2020
Niche-directed evolution modulates genome architecture in freshwater Planctomycetes text January 2019
Freshwater carbon and nutrient cycles revealed through reconstructed population genomes journal January 2018
Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites journal January 2020

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