Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Timescale Separation of Positive and Negative Signaling Creates History-Dependent Responses to IgE Receptor Stimulation

Journal Article · · Scientific Reports
 [1];  [2];  [3];  [4];  [5];  [1];  [3];  [2];  [2];  [5];  [4];  [6]
  1. Sandia National Lab. (SNL-CA), Livermore, CA (United States). Dept. of Systems Biology. Biological and Material Sciences
  2. Cornell Univ., Ithaca, NY (United States). Dept. of Chemistry and Chemical Biology
  3. Sandia National Lab. (SNL-CA), Livermore, CA (United States). Dept. of Biotechnology and Bioengineering. Biological and Material Sciences
  4. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  5. Univ. of New Mexico, Albuquerque, NM (United States). School of Medicine. Dept. of Pathology
  6. Sandia National Lab. (SNL-CA), Livermore, CA (United States). Biological and Material Sciences

The high-affinity receptor for IgE expressed on the surface of mast cells and basophils interacts with antigens, via bound IgE antibody, and triggers secretion of inflammatory mediators that contribute to allergic reactions. To understand how past inputs (memory) influence future inflammatory responses in mast cells, a microfluidic device was used to precisely control exposure of cells to alternating stimulatory and non-stimulatory inputs. We determined that the response to subsequent stimulation depends on the interval of signaling quiescence. For shorter intervals of signaling quiescence, the second response is blunted relative to the first response, whereas longer intervals of quiescence induce an enhanced second response. Through an iterative process of computational modeling and experimental tests, we found that these memory-like phenomena arise from a confluence of rapid, short-lived positive signals driven by the protein tyrosine kinase Syk; slow, long-lived negative signals driven by the lipid phosphatase Ship1; and slower degradation of Ship1 co-factors. This work advances our understanding of mast cell signaling and represents a generalizable approach for investigating the dynamics of signaling systems.

Research Organization:
Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Sandia National Lab. (SNL-CA), Livermore, CA (United States); Cornell Univ., Ithaca, NY (United States); Univ. of New Mexico, Albuquerque, NM (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23); USDOE National Nuclear Security Administration (NNSA); National Inst. of Health (NIH) (United States)
Grant/Contract Number:
AC52-06NA25396; NA0003525
OSTI ID:
1457302
Alternate ID(s):
OSTI ID: 1481886
Report Number(s):
LA-UR--15-28484
Journal Information:
Scientific Reports, Journal Name: Scientific Reports Vol. 7; ISSN 2045-2322
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English

References (43)

Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems: Computational approach for studying biomolecular site dynamics in cell signaling systems
  • Chylek, Lily A.; Harris, Leonard A.; Tung, Chang-Shung
  • Wiley Interdisciplinary Reviews: Systems Biology and Medicine, Vol. 6, Issue 1 https://doi.org/10.1002/wsbm.1245
journal September 2013
Rule-Based Modeling of Biochemical Systems with BioNetGen book January 2009
Syk and pTyr'd: Signaling through the B cell antigen receptor journal July 2009
Proline-rich Akt substrate of 40kDa (PRAS40): A novel downstream target of PI3k/Akt signaling pathway journal January 2012
Phosphatase regulation of immunoreceptor signaling in T cells, B cells and mast cells journal June 2013
Desensitization of mast cells’ secretory response to an immuno-receptor stimulus journal August 2005
Ramipril and metoprolol intake aggravate human and murine anaphylaxis: Evidence for direct mast cell priming journal February 2015
Structural and Biophysical Characterization of the Syk Activation Switch journal January 2013
Characterization of protein-tyrosine phosphatases that dephosphorylate the high affinity IgE receptor. journal September 1997
Optimal Aggregation of FcεRI with a Structurally Defined Trivalent Ligand Overrides Negative Regulation Driven by Phosphatases journal May 2014
Regulation of mast-cell and basophil function and survival by IgE journal October 2002
Signal processing by the HOG MAP kinase pathway journal May 2008
Optimizing ring assembly reveals the strength of weak interactions journal January 2012
The 145-kDa protein induced to associate with Shc by multiple cytokines is an inositol tetraphosphate and phosphatidylinositol 3,4,5-triphosphate 5-phosphatase. journal February 1996
The src homology 2-containing inositol phosphatase (SHIP) is the gatekeeper of mast cell degranulation journal September 1998
Modeling for (physical) biologists: an introduction to the rule-based approach journal July 2015
BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains journal June 2004
BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments journal November 2015
The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae journal January 2008
SUNDIALS: Suite of nonlinear and differential/algebraic equation solvers journal September 2005
Subthreshold and Suboptimal Desensitization of Human Basophils journal January 1982
Modeling the Effect of APC Truncation on Destruction Complex Function in Colorectal Cancer Cells journal September 2013
Multi-state Modeling of Biomolecules journal September 2014
Single-Cell Measurements of IgE-Mediated FcεRI Signaling Using an Integrated Microfluidic Platform journal March 2013
SHIP1 Inhibition Increases Immunoregulatory Capacity and Triggers Apoptosis of Hematopoietic Cancer Cells journal March 2010
In Vitro Desensitization of Human Skin Mast Cells journal October 2011
Role of mast cells in allergic and non-allergic immune responses: comparison of human and murine data journal February 2007
New developments in FcεRI regulation, function and inhibition journal May 2007
NF-κB signalling and cell fate decisions in response to a short pulse of tumour necrosis factor journal December 2016
Tyr130 phosphorylation triggers Syk release from antigen receptor by long-distance conformational uncoupling journal August 2008
Characterization of Protein-tyrosine Phosphatases That Dephosphorylate the High Affinity IgE Receptor journal May 1997
The FcϵRIβ Immunoreceptor Tyrosine-based Activation Motif Exerts Inhibitory Control on MAPK and IκB Kinase Phosphorylation and Mast Cell Cytokine Production journal September 2004
Phosphoinositide lipid phosphatase SHIP1 and PTEN coordinate to regulate cell migration and adhesion journal April 2012
Differential mast cell outcomes are sensitive to FcεRI-Syk binding kinetics journal November 2017
BioNetGen 2.2: advances in rule-based modeling journal July 2016
Differential Mast Cell Outcomes Are Sensitive to FcεRI-Syk Binding Kinetics posted_content June 2017
Diverse Sensitivity Thresholds in Dynamic Signaling Responses by Social Amoebae journal February 2012
Rift Valley Fever Virus Strain MP-12 Enters Mammalian Host Cells via Caveola-Mediated Endocytosis journal September 2012
Induction of Basophil Desensitization in Physiological Medium: Enhancement after IgE-Dependent Upregulation of Surface IgE Binding on Basophils journal January 2003
Subthreshold and Suboptimal Desensitization of Human Basophils journal January 1982
p66Shc Is a Negative Regulator of FcεRI-Dependent Signaling in Mast Cells journal March 2011
Investigation of Early Events in FcεRI-Mediated Signaling Using a Detailed Mathematical Model journal April 2003
Digital signaling decouples activation probability and population heterogeneity journal October 2015

Cited By (4)

Parameter estimation and uncertainty quantification for systems biology models journal December 2019
PyBioNetFit and the Biological Property Specification Language journal September 2019
The Autoimmune Skin Disease Bullous Pemphigoid: The Role of Mast Cells in Autoantibody-Induced Tissue Injury journal March 2018
Rational programming of history-dependent logic in cellular populations posted_content April 2019

Similar Records

An indoxyl compound 5-bromo-4-chloro-3-indolyl 1,3-diacetate, CAC-0982, suppresses activation of Fyn kinase in mast cells and IgE-mediated allergic responses in mice
Journal Article · Mon Jun 15 00:00:00 EDT 2015 · Toxicology and Applied Pharmacology · OSTI ID:22465771

Suppression of IgE-mediated mast cell activation and mouse anaphylaxis via inhibition of Syk activation by 8-formyl-7-hydroxy-4-methylcoumarin, 4μ8C
Journal Article · Sun Oct 01 00:00:00 EDT 2017 · Toxicology and Applied Pharmacology · OSTI ID:22722929

Single-Cell Measurements of IgE-Mediated FcεRI Signaling Using an Integrated Microfluidic Platform
Journal Article · Wed Mar 27 00:00:00 EDT 2013 · PLoS ONE · OSTI ID:1321718