A small-molecule fragment that emulates binding of receptor and broadly neutralizing antibodies to influenza A hemagglutinin

Kadam, Rameshwar U.; Wilson, Ian A.

doi:10.1073/pnas.1801999115

Title: A small-molecule fragment that emulates binding of receptor and broadly neutralizing antibodies to influenza A hemagglutinin

Journal Article · Mon Apr 02 00:00:00 EDT 2018 · Proceedings of the National Academy of Sciences of the United States of America

DOI:https://doi.org/10.1073/pnas.1801999115· OSTI ID:1434752

Kadam, Rameshwar U. ^[1]; Wilson, Ian A. ^[1]

The Scripps Research Inst., La Jolla, CA (United States)

The influenza virus hemagglutinin (HA) glycoprotein mediates receptor binding and membrane fusion during viral entry in host cells. Blocking these key steps in viral infection has applications for development of novel antiinfluenza therapeutics as well as vaccines. However, the lack of structural information on how small molecules can gain a foothold in the small, shallow receptor-binding site (RBS) has hindered drug design against this important target on the viral pathogen. Here, we report on the serendipitous crystallization-based discovery of a small-moleculeN-cyclohexyltaurine, commonly known as the buffering agent CHES, that is able to bind to both group-1 and group-2 HAs of influenza A viruses. X-ray structural characterization of group-1 H5N1 A/Vietnam/1203/2004 (H5/Viet) and group-2 H3N2 A/Hong Kong/1/1968 (H3/HK68) HAs at 2.0-Å and 2.57-Å resolution, respectively, revealed thatN-cyclohexyltaurine binds to the heart of the conserved HA RBS.N-cyclohexyltaurine mimics the binding mode of the natural receptor sialic acid and RBS-targeting bnAbs through formation of similar hydrogen bonds and CH-π interactions with the HA. In H3/HK68,N-cyclohexyltaurine also binds to a conserved pocket in the stem region, thereby exhibiting a dual-binding mode in group-2 HAs. We conclude these long-awaited structural insights into RBS recognition by a noncarbohydrate-based small molecule enhance our knowledge of how to target this important functional site and can serve as a template to guide the development of novel broad-spectrum small-molecule therapeutics against influenza virus.

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Research Organization:: Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)

Sponsoring Organization:: National Institutes of Health (NIH); USDOE

Grant/Contract Number:: AC02-06CH11357

OSTI ID:: 1434752

Journal Information:: Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, Issue 16; ISSN 0027-8424

Publisher:: National Academy of SciencesCopyright Statement

Country of Publication:: United States

Language:: ENGLISH

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Cited by: 22 works

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Molecular Docking of Broad-Spectrum Antibodies on Hemagglutinins of Influenza A Virus Le, Khanh PB; Do, Phuc-Chau; Amaro, Rommie E. Evolutionary Bioinformatics, Vol. 15 https://doi.org/10.1177/1176934319876938	journal	January 2019
Current and future influenza vaccines Yamayoshi, Seiya; Kawaoka, Yoshihiro Nature Medicine, Vol. 25, Issue 2 https://doi.org/10.1038/s41591-018-0340-z	journal	January 2019
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Antiviral Activities of Mulberry ( Morus alba ) Juice and Seed against Influenza Viruses Kim, Hyojin; Chung, Mi Sook Evidence-Based Complementary and Alternative Medicine, Vol. 2018 https://doi.org/10.1155/2018/2606583	journal	November 2018
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60 APPLIED LIFE SCIENCES
influenza virus
drug design
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N-cyclohexyltaurine

Title: A small-molecule fragment that emulates binding of receptor and broadly neutralizing antibodies to influenza A hemagglutinin

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