Impact of spatial organization on a novel auxotrophic interaction among soil microbes

Jiang, Xue; ZerfaB, Christian; Feng, Song; Eichmann, Ruth; Asally, Munehiro; Schafer, Patrick; Soyer, Orkun S.

doi:10.1038/s41396-018-0095-z

Title: Impact of spatial organization on a novel auxotrophic interaction among soil microbes

Journal Article · Fri Mar 23 00:00:00 EDT 2018 · The ISME Journal

DOI:https://doi.org/10.1038/s41396-018-0095-z· OSTI ID:1434433

Jiang, Xue ^[1]; ZerfaB, Christian ^[1];

^[2]; Eichmann, Ruth ^[1]; Asally, Munehiro ^[1]; Schafer, Patrick ^[1];

^[1]

The Univ. of Warwick, Coventry (United Kingdom)
Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

Here, a key prerequisite to achieve a deeper understanding of microbial communities and to engineer synthetic ones is to identify the individual metabolic interactions among key species and how these interactions are affected by different environmental factors. Deciphering the physiological basis of species–species and species–environment interactions in spatially organized environments requires reductionist approaches using ecologically and functionally relevant species. To this end, we focus here on a defined system to study the metabolic interactions in a spatial context among the plant-beneficial endophytic fungus Serendipita indica, and the soil-dwelling model bacterium Bacillus subtilis. Focusing on the growth dynamics of S. indica under defined conditions, we identified an auxotrophy in this organism for thiamine, which is a key co-factor for essential reactions in the central carbon metabolism. We found that S. indica growth is restored in thiamine-free media, when co-cultured with B. subtilis. The success of this auxotrophic interaction, however, was dependent on the spatial and temporal organization of the system; the beneficial impact of B. subtilis was only visible when its inoculation was separated from that of S. indica either in time or space. These findings describe a key auxotrophic interaction in the soil among organisms that are shown to be important for plant ecosystem functioning, and point to the potential importance of spatial and temporal organization for the success of auxotrophic interactions. These points can be particularly important for engineering of minimal functional synthetic communities as plant seed treatments and for vertical farming under defined conditions.

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Research Organization:: Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)

Sponsoring Organization:: USDOE Laboratory Directed Research and Development (LDRD) Program

Grant/Contract Number:: AC52-06NA25396

OSTI ID:: 1434433

Report Number(s):: LA-UR-18-21554

Journal Information:: The ISME Journal, Vol. 12; ISSN 1751-7362

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 31 works

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59 BASIC BIOLOGICAL SCIENCES
Biological Science
Auxotrophy
soil microbial communities
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endophytic fungi
thiamine
vitamins
metabolic interaction
precision farming

Title: Impact of spatial organization on a novel auxotrophic interaction among soil microbes

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