Stable isotope probing with 18O-water to investigate microbial growth and death in environmental samples

Schwartz, Egbert; Hayer, Michaela; Hungate, Bruce A.; Koch, Benjamin J.; McHugh, Theresa A.; Mercurio, William; Morrissey, Ember M.; Soldanova, Katerina

doi:10.1016/j.copbio.2016.03.003

Title: Stable isotope probing with 18O-water to investigate microbial growth and death in environmental samples

Journal Article · Sat Oct 01 00:00:00 EDT 2016 · Current Opinion in Biotechnology

DOI:https://doi.org/10.1016/j.copbio.2016.03.003· OSTI ID:1434208

; Hayer, Michaela; Hungate, Bruce A.; Koch, Benjamin J.; McHugh, Theresa A.; Mercurio, William; Morrissey, Ember M.; Soldanova, Katerina

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Sponsoring Organization:: USDOE

OSTI ID:: 1434208

Journal Information:: Current Opinion in Biotechnology, Journal Name: Current Opinion in Biotechnology Vol. 41 Journal Issue: C; ISSN 0958-1669

Publisher:: ElsevierCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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Cited by: 21 works

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References (20)

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The use of stable isotope probing to identify key iron-reducing microorganisms involved in anaerobic benzene degradation Kunapuli, Umakanth; Lueders, Tillmann; Meckenstock, Rainer U. The ISME Journal, Vol. 1, Issue 7 https://doi.org/10.1038/ismej.2007.73	journal	September 2007
Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients: Quantitative analysis of SIP gradients Lueders, Tillmann; Manefield, Mike; Friedrich, Michael W. Environmental Microbiology, Vol. 6, Issue 1 https://doi.org/10.1046/j.1462-2920.2003.00536.x	journal	December 2003
Characterizing the diversity of active bacteria in soil by comprehensive stable isotope probing of DNA and RNA with H ₂ ¹⁸ O Rettedal, Elizabeth A.; Brözel, Volker S. MicrobiologyOpen, Vol. 4, Issue 2 https://doi.org/10.1002/mbo3.230	journal	February 2015
Stable-isotope probing as a tool in microbial ecology Radajewski, Stefan; Ineson, Philip; Parekh, Nisha R. Nature, Vol. 403, Issue 6770, p. 646-649 https://doi.org/10.1038/35001054	journal	February 2000
Growth and death of bacteria and fungi underlie rainfall-induced carbon dioxide pulses from seasonally dried soil Blazewicz, Steven J.; Schwartz, Egbert; Firestone, Mary K. Ecology, Vol. 95, Issue 5 https://doi.org/10.1890/13-1031.1	journal	May 2014
Linking soil bacterial biodiversity and soil carbon stability Mau, Rebecca L.; Liu, Cindy M.; Aziz, Maliha The ISME Journal, Vol. 9, Issue 6 https://doi.org/10.1038/ismej.2014.205	journal	October 2014
Characterization of growing bacterial populations in McMurdo Dry Valley soils through stable isotope probing with ¹⁸ O-water Schwartz, Egbert; Van Horn, David J.; Buelow, Heather N. FEMS Microbiology Ecology, Vol. 89, Issue 2 https://doi.org/10.1111/1574-6941.12349	journal	May 2014
A Quantitative Assay for Linking Microbial Community Function and Structure of a Naphthalene-Degrading Microbial Consortium Yu, Chang-Ping; Chu, Kung-Hui Environmental Science & Technology, Vol. 39, Issue 24 https://doi.org/10.1021/es051024e	journal	December 2005
Stable Isotope Probing with ¹⁸O-Water to Investigate Growth and Mortality of Ammonia Oxidizing Bacteria and Archaea in Soil Adair, Karen; Schwartz, Egbert Research on Nitrification and Related Processes, Part A https://doi.org/10.1016/B978-0-12-381294-0.00007-9	book	January 2011
Dynamics of 18O Incorporation from H 2 18O into Soil Microbial DNA Blazewicz, Steven J.; Schwartz, Egbert Microbial Ecology, Vol. 61, Issue 4 https://doi.org/10.1007/s00248-011-9826-7	journal	March 2011
Resuscitation of the rare biosphere contributes to pulses of ecosystem activity Aanderud, Zachary T.; Jones, Stuart E.; Fierer, Noah Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.00024	journal	January 2015
Determination of the base composition of deoxyribonucleic acid from its buoyant density in CsCl Schildkraut, Carl L.; Marmur, Julius; Doty, Paul Journal of Molecular Biology, Vol. 4, Issue 6 https://doi.org/10.1016/S0022-2836(62)80100-4	journal	June 1962
Characterization of Growing Microorganisms in Soil by Stable Isotope Probing with H218O Schwartz, E. Applied and Environmental Microbiology, Vol. 73, Issue 8 https://doi.org/10.1128/AEM.02021-06	journal	February 2007
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Validation of Heavy-Water Stable Isotope Probing for the Characterization of Rapidly Responding Soil Bacteria Aanderud, Zachary T.; Lennon, Jay T. Applied and Environmental Microbiology, Vol. 77, Issue 13 https://doi.org/10.1128/AEM.02735-10	journal	May 2011
Quantitative Microbial Ecology through Stable Isotope Probing Hungate, Bruce A.; Mau, Rebecca L.; Schwartz, Egbert Applied and Environmental Microbiology, Vol. 81, Issue 21 https://doi.org/10.1128/AEM.02280-15	journal	August 2015
Stable Isotope Probing with 15N Achieved by Disentangling the Effects of Genome G+C Content and Isotope Enrichment on DNA Density Buckley, D. H.; Huangyutitham, V.; Hsu, S. -F. Applied and Environmental Microbiology, Vol. 73, Issue 10 https://doi.org/10.1128/AEM.02609-06	journal	March 2007
Identification of a Toluene-Degrading Bacterium from a Soil Sample through H ₂ ¹⁸ O DNA Stable Isotope Probing Woods, Angela; Watwood, Maribeth; Schwartz, Egbert Applied and Environmental Microbiology, Vol. 77, Issue 17 https://doi.org/10.1128/AEM.05689-11	journal	July 2011
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