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Title: Salt-bridge modulates differential calcium-mediated ligand binding to integrin α1- and α2-I domains

Journal Article · · Scientific Reports
ORCiD logo [1];  [2];  [1];  [1];  [3];  [3];  [4];  [3]
  1. Vanderbilt Univ. Medical Center, Nashville, TN (United States)
  2. Cornell Univ., Ithaca, NY (United States); Argonne National Lab. (ANL), Argonne, IL (United States). Northeastern Collaborative Access Team
  3. Vanderbilt Univ. Medical Center, Nashville, TN (United States); Veterans Affairs Hospital, Nashville, TN (United States)
  4. Vanderbilt Univ. Medical Center, Nashville, TN (United States); Vanderbilt Univ., Nashville, TN (United States)

Integrins are transmembrane cell-extracellular matrix adhesion receptors that impact many cellular functions. A subgroup of integrins contain an inserted (I) domain within the α–subunits (αI) that mediate ligand recognition where function is contingent on binding a divalent cation at the metal ion dependent adhesion site (MIDAS). Ca2+ is reported to promote α1I but inhibit α2I ligand binding. We co-crystallized individual I-domains with MIDAS-bound Ca2+ and report structures at 1.4 and 2.15 Å resolution, respectively. Both structures are in the “closed” ligand binding conformation where Ca2+ induces minimal global structural changes. Comparisons with Mg2+-bound structures reveal Mg2+ and Ca2+ bind α1I in a manner sufficient to promote ligand binding. In contrast, Ca2+ is displaced in the α2I domain MIDAS by 1.4 Å relative to Mg2+ and unable to directly coordinate all MIDAS residues. We identified an E152-R192 salt bridge hypothesized to limit the flexibility of the α2I MIDAS, thus, reducing Ca2+ binding. A α2I E152A construct resulted in a 10,000-fold increase in Mg2+ and Ca2+ binding affinity while increasing binding to collagen ligands 20%. These data indicate the E152-R192 salt bridge is a key distinction in the molecular mechanism of differential ion binding of these two I domains.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
National Institute of General Medical Sciences (NIGMS); National Institutes of Health (NIH); USDOE Office of Science (SC); US Department of Veterans Affairs
Grant/Contract Number:
S10 RR029205; AC02-06CH11357; T32 HL94296–06; R01 DK18381; R01 DK069221; 5T32HL94296-06; R01DK018381; R01DK069221; I01BX002196; I01BX002025
OSTI ID:
1431362
Journal Information:
Scientific Reports, Vol. 8, Issue 1; ISSN 2045-2322
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
ENGLISH
Citation Metrics:
Cited by: 14 works
Citation information provided by
Web of Science

References (78)

Structural basis for distinctive recognition of fibrinogen γC peptide by the platelet integrin α IIb β 3 journal August 2008
On the Affinity Regulation of the Metal-Ion-Dependent Adhesion Sites in Integrins journal March 2006
Mapping the Collagen-binding Site in the I Domain of the Glycoprotein Ia/IIa (Integrin α 2 β 1 ) journal February 2000
Electrostatics of nanosystems: Application to microtubules and the ribosome journal August 2001
Solving structures of protein complexes by molecular replacement with Phaser journal December 2006
Integrin α 2 I Domain Recognizes Type I and Type IV Collagens by Different Mechanisms journal February 2000
Overview of the CCP 4 suite and current developments journal March 2011
The Integrin α1 A-domain Is a Ligand Binding Site for Collagens and Laminin journal May 1997
PHENIX: a comprehensive Python-based system for macromolecular structure solution. text January 2010
A novel divalent cation-binding site in the a domain of the ?2 integrin CR3 (CD11b/CD18) is essential for ligand binding journal March 1993
Identification of amino acids in the CD11a I-domain important for binding of the leukocyte function-associated antigen-1 (LFA-1) to intercellular adhesion molecule-1 (ICAM-1). journal November 1996
Determinants of Ligand Binding Specificity of the α 1 β 1 and α 2 β 1 Integrins journal November 1999
Amino Acid Sequences within the α Subunit of Integrin α M β 2 (Mac-1) Critical for Specific Recognition of C3bi journal June 1999
Integrins as therapeutic targets: lessons and opportunities journal October 2010
Structure of Collagen Receptor Integrin α 1 I Domain Carrying the Activating Mutation E317A journal October 2011
Crystal Structure of the Extracellular Segment of Integrin alpha Vbeta 3 in Complex with an Arg-Gly-Asp Ligand journal March 2002
Collagen-Binding Integrins as Pharmaceutical Targets journal March 2005
Identification of putative ligand binding sites within I domain of integrin alpha 2 beta 1 (VLA-2, CD49b/CD29) journal April 1994
A Binding Interface on the I Domain of Lymphocyte Function-associated Antigen-1 (LFA-1) Required for Specific Interaction with Intercellular Adhesion Molecule 1 (ICAM-1) journal August 1995
Calcium Ion Coordination:  A Comparison with That of Beryllium, Magnesium, and Zinc journal January 1996
Leukocyte integrin α L β 2 headpiece structures: The αI domain, the pocket for the internal ligand, and concerted movements of its loops journal March 2016
Calcium signaling journal January 1995
Interaction between Collagen and the α 2 I-domain of Integrin α 2 β 1 : CRITICAL ROLE OF CONSERVED RESIDUES IN THE METAL ION-DEPENDENT ADHESION SITE (MIDAS) REGION journal November 1999
Functional aspects of protein flexibility journal March 2009
XDS journal January 2010
Computational studies of polyurethanases from Pseudomonas journal January 2021
Ligand recognition by the I domain-containing integrins journal June 1998
Structure of an integrin with an αI domain, complement receptor type 4 journal December 2009
Crystal Structure of the Extracellular Segment of Integrin alpha Vbeta 3 journal September 2001
Identification and Reconstruction of the Binding Site within α M β 2 for a Specific and High Affinity Ligand, NIF journal July 1997
NMR solution structure of the inserted domain of human leukocyte function associated antigen-1 journal February 2000
Two conformations of the integrin A-domain (I-domain): a pathway for activation? journal December 1995
Structure of an Allosteric Inhibitor of LFA-1 Bound to the I-Domain Studied by Crystallography, NMR, and Calorimetry , journal March 2004
The Structure of Integrin α1I Domain in Complex with a Collagen-mimetic Peptide journal November 2013
Crystal Structure of the I Domain from Integrin α2β1 journal November 1997
Crystal structure of the α1β1 integrin I-domain: insights into integrin I-domain function journal June 1999
Conformational Regulation of Integrin Structure and Function journal June 2002
Directed evolution to probe protein allostery and integrin I domains of 200,000-fold higher affinity journal April 2006
Structural basis for LFA-1 inhibition upon lovastatin binding to the CD11a I-domain 1 1Edited by F. E. Cohen journal September 1999
Crystal structure of the A domain from the a subunit of integrin CR3 (CD11 b/CD18) journal February 1995
Structural basis for allostery in integrins and binding to fibrinogen-mimetic therapeutics journal September 2004
Structural Basis of Collagen Recognition by Integrin α2β1 journal March 2000
Dynamic Structural Changes Are Observed upon Collagen and Metal Ion Binding to the Integrin α1 I Domain journal July 2012
Micromolar Ca 2+ Concentrations Are Essential for Mg 2+ -dependent Binding of Collagen by the Integrin α 2 β 1 in Human Platelets journal May 2000
Interaction of type IV collagen with the isolated integrins alpha1beta1 and alpha2beta1 journal July 1993
The VLA-2 (alpha 2 beta 1) I domain functions as a ligand-specific recognition sequence for endothelial cell attachment and spreading: molecular and functional characterization journal December 1994
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
Integrins journal September 2002
Echovirus 1 interaction with the isolated VLA-2 I domain. journal January 1995
The regulation of integrin function by Ca2+ journal December 2000
Jararhagin-derived RKKH Peptides Induce Structural Changes in α 1 I Domain of Human Integrin α 1 β 1 journal December 2003
Integrin antagonists as therapeutics for inflammatory diseases journal September 2006
[20] Processing of X-ray diffraction data collected in oscillation mode book January 1997
Stable Coordination of the Inhibitory Ca 2+ Ion at the Metal Ion-Dependent Adhesion Site in Integrin CD11b/CD18 by an Antibody-Derived Ligand Aspartate: Implications for Integrin Regulation and Structure-Based Drug Design journal November 2011
Structures of the αL I Domain and Its Complex with ICAM-1 Reveal a Shape-Shifting Pathway for Integrin Regulation journal January 2003
What factors determine cation coordination numbers? journal December 1988
The regulation of integrin function by divalent cations journal January 2012
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations journal July 2004
The role of the divalent cation in the structure of the I domain from the CD11a/CD18 integrin journal August 1996
Spectropotentiometric analysis of metal binding to structural zinc-binding sites: accounting quantitatively for pH and metal ion buffering effects journal September 2003
Two Functional States of the CD11b A-Domain: Correlations with Key Features of Two Mn 2+ -complexed Crystal Structures journal December 1998
PARP1 exhibits enhanced association and catalytic efficiency with γH2A.X-nucleosome journal December 2019
Crystal structure of the I-domain from the CD11a/CD18 (LFA-1, alpha L beta 2) integrin. journal October 1995
Structural Insights into How the MIDAS Ion Stabilizes Integrin Binding to an RGD Peptide under Force journal November 2004
Cavin1 intrinsically disordered domains are essential for fuzzy electrostatic interactions and caveola formation journal February 2021
Calcium Signaling journal July 2012
Features and development of Coot journal March 2010
Enhancing Integrin α1 Inserted (I) Domain Affinity to Ligand Potentiates Integrin α1β1-mediated Down-regulation of Collagen Synthesis journal August 2012
Overview of the CCP4 suite and current developments. text January 2011
Rapid evolution of mammalian APLP1 as a synaptic adhesion molecule journal May 2021
Protein Identification and Analysis Tools on the ExPASy Server book January 2005
Characteristics of Cation Binding to the I Domains of LFA-1 and MAC-1: THE LFA-1 I DOMAIN CONTAINS A Ca journal August 1998
Isothermal Titration Calorimetry: Experimental Design, Data Analysis, and Probing Macromolecule/Ligand Binding and Kinetic Interactions book October 2007
Identification of Amino Acids in the CD11a I-domain Important for Binding of the Leukocyte Function-associated Antigen-1 (LFA-1) to Intercellular Adhesion Molecule-1 (ICAM-1) journal May 1995
Calcium Signaling journal December 2007
The role of the I domain in ligand binding of the human integrin alpha 1 beta 1. journal September 1994
Integrin α2 I-domain is a binding site for collagens journal April 1995
Direct binding of collagen to the I domain of integrin alpha 2 beta 1 (VLA-2, CD49b/CD29) in a divalent cation-independent manner journal October 1994

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