skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Crystal structure of human IRAK1

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America
 [1];  [1];  [1];  [1];  [2];  [2];  [2];  [1]
  1. Harvard Medical School, Boston, MA (United States); Boston Children’s Hospital, Boston, MA (United States)
  2. Harvard Medical School, Boston, MA (United States); Dana–Farber Cancer Inst., Boston, MA (United States)

Interleukin 1 (IL-1) receptor-associated kinases (IRAKs) are serine/threonine kinases that play critical roles in initiating innate immune responses against foreign pathogens and other types of dangers through their role in Toll-like receptor (TLR) and interleukin 1 receptor (IL-1R) mediated signaling pathways. Upon ligand binding, TLRs and IL-1Rs recruit adaptor proteins, such as myeloid differentiation primary response gene 88 (MyD88), to the membrane, which in turn recruit IRAKs via the death domains in these proteins to form the Myddosome complex, leading to IRAK kinase activation. Despite their biological and clinical significance, only the IRAK4 kinase domain structure has been determined among the four IRAK family members. Here, in this work, we report the crystal structure of the human IRAK1 kinase domain in complex with a small molecule inhibitor. The structure reveals both similarities and differences between IRAK1 and IRAK4 and is suggestive of approaches to develop IRAK1- or IRAK4-specific inhibitors for potential therapeutic applications. While the IRAK4 kinase domain is capable of homodimerization in the unphosphorylated state, we found that the IRAK1 kinase domain is constitutively monomeric regardless of its phosphorylation state. Additionally, the IRAK1 kinase domain forms heterodimers with the phosphorylated, but not unphosphorylated, IRAK4 kinase domain. Collectively, these data indicate a two-step kinase activation process in which the IRAK4 kinase domain first homodimerizes in the Myddosome, leading to itstrans-autophosphorylation and activation. The phosphorylated IRAK4 kinase domain then forms heterodimers with the IRAK1 kinase domain within the Myddosome, leading to its subsequent phosphorylation and activation.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
National Institutes of Health (NIH); USDOE Office of Science (SC); Cancer Research Institute (CRI)
Grant/Contract Number:
P41 GM103403; S10 RR029205; AC02-06CH11357; AI050872
OSTI ID:
1430352
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Vol. 114, Issue 51; ISSN 0027-8424
Publisher:
National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
ENGLISH
Citation Metrics:
Cited by: 38 works
Citation information provided by
Web of Science

References (39)

Discovery and hit-to-lead optimization of 2,6-diaminopyrimidine inhibitors of interleukin-1 receptor-associated kinase 4 journal May 2015
Discovery and Structure Enabled Synthesis of 2,6-Diaminopyrimidin-4-one IRAK4 Inhibitors journal July 2015
IRAK-4: A novel member of the IRAK family with the properties of an IRAK-kinase journal April 2002
Negative Regulation of Toll-like Receptor-mediated Signaling by Tollip journal December 2001
Regulation of IRAK-1 activation by its C-terminal domain journal May 2009
Discovery of Clinical Candidate 1-{[(2 S ,3 S ,4 S )-3-Ethyl-4-fluoro-5-oxopyrrolidin-2-yl]methoxy}-7-methoxyisoquinoline-6-carboxamide (PF-06650833), a Potent, Selective Inhibitor of Interleukin-1 Receptor Associated Kinase 4 (IRAK4), by Fragment-Based Drug Design journal June 2017
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
Small anti-viral compounds activate immune cells via the TLR7 MyD88–dependent signaling pathway journal January 2002
Efforts towards the optimization of a bi-aryl class of potent IRAK4 inhibitors journal September 2016
Features and development of Coot journal March 2010
Targeting IRAK1 as a Therapeutic Approach for Myelodysplastic Syndrome journal July 2013
Characterization of Pellino2, a substrate of IRAK1 and IRAK4 journal June 2003
Distinct molecular mechanism for initiating TRAF6 signalling journal July 2002
IRAK: A Kinase Associated with the Interleukin-1 Receptor journal February 1996
The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling journal May 2007
Identification of the phosphorylation sites on the E3 ubiquitin ligase Pellino that are critical for activation by IRAK1 and IRAK4 journal March 2009
Identification of the protein kinases that activate the E3 ubiquitin ligase Pellino 1 in the innate immune system journal December 2011
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
IRAK4 Dimerization and trans -Autophosphorylation Are Induced by Myddosome Assembly journal September 2014
IRAK (Pelle) Family Member IRAK-2 and MyD88 as Proximal Mediators of IL-1 Signaling journal November 1997
Tollip, a new component of the IL-1RI pathway, links IRAK to the IL-1 receptor journal May 2000
Sequential Autophosphorylation Steps in the Interleukin-1 Receptor-associated Kinase-1 Regulate its Availability as an Adapter in Interleukin-1 Signaling journal November 2003
Interleukin-1 receptor-associated kinase-1 plays an essential role for Toll-like receptor (TLR)7- and TLR9-mediated interferon-α induction journal March 2005
The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability journal September 2007
Cutting Edge: IL-1 Receptor-Associated Kinase 4 Structures Reveal Novel Features and Multiple Conformations journal February 2007
A Toll-like receptor recognizes bacterial DNA journal December 2000
Crystal Structures of IRAK-4 Kinase in Complex with Inhibitors: A Serine/Threonine Kinase with Tyrosine as a Gatekeeper journal December 2006
IRAK-4 inhibitors. Part 1: A series of amides journal June 2008
TRAF6 is a signal transducer for interleukin-1 journal October 1996
Helical assembly in the MyD88–IRAK4–IRAK2 complex in TLR/IL-1R signalling journal May 2010
XDS journal January 2010
IRAK-M Is a Novel Member of the Pelle/Interleukin-1 Receptor-associated Kinase (IRAK) Family journal July 1999
Discovery of 5-Amino- N -(1 H -pyrazol-4-yl)pyrazolo[1,5- a ]pyrimidine-3-carboxamide Inhibitors of IRAK4 journal April 2015
Identification of quinazoline based inhibitors of IRAK4 for the treatment of inflammation journal June 2017
The mechanism of activation of IRAK1 and IRAK4 by interleukin-1 and Toll-like receptor agonists journal June 2017
Potent and Selective Amidopyrazole Inhibitors of IRAK4 That Are Efficacious in a Rodent Model of Inflammation journal May 2015
The IRAK-catalysed activation of the E3 ligase function of Pellino isoforms induces the Lys63-linked polyubiquitination of IRAK1 journal December 2007
MyD88: An Adapter That Recruits IRAK to the IL-1 Receptor Complex journal December 1997
IRAK1 is a therapeutic target that drives breast cancer metastasis and resistance to paclitaxel journal October 2015

Cited By (8)

Putative link between Polo-like kinases (PLKs) and Toll-like receptor (TLR) signaling in transformed and primary human immune cells journal September 2019
Targeting the Innate Immune Kinase IRAK1 in Radioresistant Cancer: Double-Edged Sword or One-Two Punch? journal November 2019
Viperin interacts with the kinase IRAK1 and the E3 ubiquitin ligase TRAF6, coupling innate immune signaling to antiviral ribonucleotide synthesis journal March 2019
Gaudichaudione H Inhibits Inflammatory Responses in Macrophages and Dextran Sodium Sulfate-Induced Colitis in Mice journal January 2020
Interleukin-1 receptor–associated kinase 4 (IRAK4) plays a dual role in myddosome formation and Toll-like receptor signaling journal August 2018
Inhibition of interleukin-1 receptor-associated kinase 1 (IRAK1) as a therapeutic strategy journal September 2018
Constitutively active MyD88/CD40 costimulation enhances expansion and efficacy of chimeric antigen receptor T cells targeting hematological malignancies journal February 2019
Putative link between Polo-like kinases (PLKs) and Toll-like receptor (TLR) signaling in transformed and primary human immune cells text January 2019