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Title: TomoBank: a tomographic data repository for computational x-ray science

Journal Article · · Measurement Science and Technology
ORCiD logo [1];  [1]; ORCiD logo [2];  [3];  [4]; ORCiD logo [5];  [6];  [7]; ORCiD logo [8];  [9];  [10]
  1. Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
  2. Oregon State Univ., Corvallis, OR (United States)
  3. Centrum Wiskunde & Informatica, Amsterdam, (Netherlands)
  4. European Synchrotron Radiation Facility (ESRF), Grenoble (France)
  5. Elettra-Sincrotrone Trieste, Basovizza (Italy)
  6. Paul Scherrer Inst. (PSI), Villigen (Switzerland). Swiss Light Source
  7. MAX IV Laboratory, Lund (Sweden)
  8. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  9. Univ. of Antwerp, Antwerp (Belgium). imec-Vision Lab.
  10. Univ. of Chicago, IL (United States)

There is a widening gap between the fast advancement of computational methods for tomographic reconstruction and their successful implementation in production software at various synchrotron facilities. This is due in part to the lack of readily available instrument datasets and phantoms representative of real materials for validation and comparison of new numerical methods. Recent advancements in detector technology made sub-second and multi-energy tomographic data collection possible [1], but also increased the demand to develop new reconstruction methods able to handle in-situ [2] and dynamic systems [3] that can be quickly incorporated in beamline production software [4]. The X-ray Tomography Data Bank, tomoBank, provides a repository of experimental and simulated datasets with the aim to foster collaboration among computational scientists, beamline scientists, and experimentalists and to accelerate the development and implementation of tomographic reconstruction methods for synchrotron facility production software by providing easy access to challenging dataset and their descriptors.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); National Science Foundation (NSF)
Grant/Contract Number:
AC02-06CH11357; FG02-94ER14466
OSTI ID:
1427546
Journal Information:
Measurement Science and Technology, Vol. 29, Issue 3; ISSN 0957-0233
Publisher:
IOP PublishingCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 45 works
Citation information provided by
Web of Science

References (18)

The Three-Dimensional Morphology of Growing Dendrites journal July 2015
Fast Tomographic Reconstruction From Limited Data Using Artificial Neural Networks journal December 2013
TIMBIR: A Method for Time-Space Reconstruction From Interlaced Views journal June 2015
TomoPy: a framework for the analysis of synchrotron tomographic data journal August 2014
Developments in synchrotron x-ray computed microtomography at the National Synchrotron Light Source
  • Dowd, Betsy A.; Campbell, Graham H.; Marr, Robert B.
  • SPIE's International Symposium on Optical Science, Engineering, and Instrumentation, SPIE Proceedings https://doi.org/10.1117/12.363725
conference September 1999
ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics journal October 2012
The Open Quantum Materials Database (OQMD): assessing the accuracy of DFT formation energies journal December 2015
The Coherent X-ray Imaging Data Bank journal August 2012
The Protein Data Bank journal January 2000
EMDataBank.org: unified data resource for CryoEM journal October 2010
Scientific data exchange: a schema for HDF5-based storage of raw and analyzed data journal October 2014
TXM-Wizard : a program for advanced data collection and evaluation in full-field transmission X-ray microscopy journal January 2012
XDesign : an open-source software package for designing X-ray imaging phantoms and experiments journal February 2017
A comparative study of X-ray tomographic microscopy on shales at different synchrotron facilities: ALS, APS and SLS journal November 2012
Simultaneous phase and amplitude extraction from a single defocused image of a homogeneous object journal April 2002
Holotomography: Quantitative phase tomography with micrometer resolution using hard synchrotron radiation x rays journal November 1999
Integration of TomoPy and the ASTRA toolbox for advanced processing and reconstruction of tomographic synchrotron data journal April 2016
Fast and flexible X-ray tomography using the ASTRA toolbox journal January 2016

Cited By (12)

Investigating Osteocytic Perilacunar/Canalicular Remodeling journal June 2019
Advanced x-ray tomography: experiment, modeling, and algorithms journal July 2018
3D reconstruction of magnetization from dichroic soft X-ray transmission tomography journal May 2018
Tomosaic : efficient acquisition and reconstruction of teravoxel tomography data using limited-size synchrotron X-ray beams journal August 2018
Nanoporous gold: a hierarchical and multiscale 3D test pattern for characterizing X-ray nano-tomography systems journal January 2019
Nanoporous gold: a hierarchical and multiscale 3D test pattern for characterizing X-ray nano-tomography systems text January 2019
Tomographic reconstruction with a generative adversarial network text January 2020
Tomographic reconstruction with a generative adversarial network text January 2020
Nanoporous gold : a hierarchical and multiscale 3D test pattern for characterizing X-ray nano-tomography systems text January 2019
Tomographic reconstruction with a generative adversarial network text January 2020
Micro-computed tomography for natural history specimens: a handbook of best practice protocols journal April 2019
A cone-beam X-ray computed tomography data collection designed for machine learning journal October 2019

Figures / Tables (14)


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