Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

Beukes, Chrizelle W.; Palmer, Marike; Manyaka, Puseletso; Chan, Wai Y.; Avontuur, Juanita R.; van Zyl, Elritha; Huntemann, Marcel; Clum, Alicia; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Stamatis, Dimitrios; Reddy, T. B. K.; Daum, Chris; Shapiro, Nicole; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; Woyke, Tanja; Blom, Jochen; Whitman, William B.; Venter, Stephanus N.; Steenkamp, Emma T.

doi:10.3389/fmicb.2017.01154

Title: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

Journal Article · Mon Jun 26 00:00:00 EDT 2017 · Frontiers in Microbiology

DOI:https://doi.org/10.3389/fmicb.2017.01154· OSTI ID:1423489

Beukes, Chrizelle W.; Palmer, Marike; Manyaka, Puseletso; Chan, Wai Y.; Avontuur, Juanita R.; van Zyl, Elritha; Huntemann, Marcel; Clum, Alicia; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Stamatis, Dimitrios; Reddy, T. B. K.; Daum, Chris; Shapiro, Nicole; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; Woyke, Tanja more »

Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato. These data unambiguously supported five distinct lineages, of which four correspond to Burkholderia sensu stricto and the newly introduced genera Paraburkholderia, Caballeronia, and Robbsia. The fifth lineage was represented by P. rhizoxinica. Based on these findings, we propose 13 new combinations for those species previously described as members of Burkholderia but that form part of Caballeronia. These findings also suggest revision of the taxonomic status of P. rhizoxinica as it is does not form part of any of the genera currently recognized in Burkholderia sensu lato. From a phylogenetic point of view, Burkholderia sensu stricto has a sister relationship with the Caballeronia+Paraburkholderia clade. Also, the lineages represented by P. rhizoxinica and R. andropogonis, respectively, emerged prior to the radiation of the Burkholderia sensu stricto+Caballeronia+Paraburkholderia clade. Our findings therefore constitute a solid framework, not only for supporting current and future taxonomic decisions, but also for studying the evolution of this assemblage of medically, industrially and agriculturally important species.

View Journal Article

Cite

Export

Save

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); National Research Foundation (NRF) (South Africa); Dept. of Science and Technology (South Africa)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1423489

Alternate ID(s):: OSTI ID: 1460296

Journal Information:: Frontiers in Microbiology, Journal Name: Frontiers in Microbiology Vol. 8; ISSN 1664-302X

Publisher:: Frontiers Media SACopyright Statement

Country of Publication:: Switzerland

Language:: English

Citation Metrics:

Cited by: 74 works

Citation information provided by
Web of Science

References (59)

A Phylogenomic Approach to Bacterial Phylogeny: Evidence of a Core of Genes Sharing a Common History Daubin, V. Genome Research, Vol. 12, Issue 7 https://doi.org/10.1101/gr.187002	journal	July 2002
First isolation of Burkholderia tropica from a neonatal patient successfully treated with imipenem Deris, Zakuan Zainy; Van Rostenberghe, Hans; Habsah, Hassan International Journal of Infectious Diseases, Vol. 14, Issue 1 https://doi.org/10.1016/j.ijid.2009.03.005	journal	January 2010
Biased gene transfer in microbial evolution Andam, Cheryl P.; Gogarten, J. Peter Nature Reviews Microbiology, Vol. 9, Issue 7 https://doi.org/10.1038/nrmicro2593	journal	June 2011
Phylogenomics and the Dynamic Genome Evolution of the Genus Streptococcus Richards, Vincent P.; Palmer, Sara R.; Pavinski Bitar, Paulina D. Genome Biology and Evolution, Vol. 6, Issue 4 https://doi.org/10.1093/gbe/evu048	journal	March 2014
List of new names and new combinations previously effectively, but not validly, published Garrity, George M.; Oren, Aharon International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7 https://doi.org/10.1099/ijs.0.000317	journal	July 2015
Burkholderia acidipaludis sp. nov., aluminium-tolerant bacteria isolated from Chinese water chestnut (Eleocharis dulcis) growing in highly acidic swamps in South-East Asia Aizawa, T.; Bao Ve, N.; Vijarnsorn, P. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 9 https://doi.org/10.1099/ijs.0.018283-0	journal	October 2009
A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria Bennett, J. S.; Jolley, K. A.; Earle, S. G. Microbiology, Vol. 158, Issue Pt_6 https://doi.org/10.1099/mic.0.056077-0	journal	March 2012
The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer Cohen, O.; Gophna, U.; Pupko, T. Molecular Biology and Evolution, Vol. 28, Issue 4 https://doi.org/10.1093/molbev/msq333	journal	December 2010
Burkholderia kirstenboschensis sp. nov. nodulates papilionoid legumes indigenous to South Africa Steenkamp, Emma T.; van Zyl, Elritha; Beukes, Chrizelle W. Systematic and Applied Microbiology, Vol. 38, Issue 8 https://doi.org/10.1016/j.syapm.2015.09.003	journal	December 2015
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough Philippe, Hervé; Brinkmann, Henner; Lavrov, Dennis V. PLoS Biology, Vol. 9, Issue 3 https://doi.org/10.1371/journal.pbio.1000602	journal	March 2011
Burkholderia caballeronis sp. nov., a nitrogen fixing species isolated from tomato (Lycopersicon esculentum) with the ability to effectively nodulate Phaseolus vulgaris Martínez-Aguilar, Lourdes; Salazar-Salazar, Corelly; Méndez, Rafael Díaz Antonie van Leeuwenhoek, Vol. 104, Issue 6 https://doi.org/10.1007/s10482-013-0028-9	journal	September 2013
List of new names and new combinations previously effectively, but not validly, published Oren, Aharon; Garrity, George M. International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 9 https://doi.org/10.1099/ijsem.0.001321	journal	September 2016
High-quality draft assemblies of mammalian genomes from massively parallel sequence data Gnerre, S.; MacCallum, I.; Przybylski, D. Proceedings of the National Academy of Sciences, Vol. 108, Issue 4 https://doi.org/10.1073/pnas.1017351108	journal	December 2010
Defining bacterial species in the genomic era: insights from the genus Acinetobacter Chan, Jacqueline Z-M; Halachev, Mihail R.; Loman, Nicholas J. BMC Microbiology, Vol. 12, Issue 1 https://doi.org/10.1186/1471-2180-12-302	journal	January 2012
Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon-contaminated soil Vanlaere, E.; van der Meer, J. R.; Falsen, E. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 2 https://doi.org/10.1099/ijs.0.65451-0	journal	February 2008
Re-evaluating prokaryotic species Gevers, Dirk; Cohan, Frederick M.; Lawrence, Jeffrey G. Nature Reviews Microbiology, Vol. 3, Issue 9 https://doi.org/10.1038/nrmicro1236	journal	August 2005
Horizontal gene transfer among genomes: The complexity hypothesis Jain, R.; Rivera, M. C.; Lake, J. A. Proceedings of the National Academy of Sciences, Vol. 96, Issue 7 https://doi.org/10.1073/pnas.96.7.3801	journal	March 1999
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences Kanehisa, Minoru; Sato, Yoko; Morishima, Kanae Journal of Molecular Biology, Vol. 428, Issue 4 https://doi.org/10.1016/j.jmb.2015.11.006	journal	February 2016
Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119	journal	March 2010
Burkholderia tropica sp. nov., a novel nitrogen-fixing, plant-associated bacterium Reis, V. M. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 54, Issue 6 https://doi.org/10.1099/ijs.0.02879-0	journal	November 2004
IMG 4 version of the integrated microbial genomes comparative analysis system Markowitz, Victor M.; Chen, I-Min A.; Palaniappan, Krishna Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt963	journal	October 2013
Towards a prokaryotic genomic taxonomy Coenye, Tom; Gevers, Dirk; de Peer, Yves Van FEMS Microbiology Reviews, Vol. 29, Issue 2 https://doi.org/10.1016/j.fmrre.2004.11.004	journal	April 2005
Members of the genus Burkholderia: good and bad guys Eberl, Leo; Vandamme, Peter F1000Research, Vol. 5 https://doi.org/10.12688/f1000research.8221.1	journal	January 2016
ProtTest: selection of best-fit models of protein evolution Abascal, F.; Zardoya, R.; Posada, D. Bioinformatics, Vol. 21, Issue 9 https://doi.org/10.1093/bioinformatics/bti263	journal	January 2005
Phylogenomics: the beginning of incongruence? Jeffroy, O.; Brinkmann, H.; Delsuc, F. Trends in Genetics, Vol. 22, Issue 4 https://doi.org/10.1016/j.tig.2006.02.003	journal	April 2006
Taxonomy of rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics Ormeño-Orrillo, Ernesto; Servín-Garcidueñas, Luis E.; Rogel, Marco A. Systematic and Applied Microbiology, Vol. 38, Issue 4 https://doi.org/10.1016/j.syapm.2014.12.002	journal	June 2015
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs Zerbino, D. R.; Birney, E. Genome Research, Vol. 18, Issue 5 https://doi.org/10.1101/gr.074492.107	journal	February 2008
A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres Abdul Rahman, Nurdyana; Parks, Donovan H.; Vanwonterghem, Inka Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.01469	journal	January 2016
FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies Kück, Patrick; Longo, Gary C. Frontiers in Zoology, Vol. 11, Issue 1 https://doi.org/10.1186/s12983-014-0081-x	journal	November 2014
Burkholderia aspalathi sp. nov., isolated from root nodules of the South African legume Aspalathus abietina Thunb Mavengere, N. R.; Ellis, A. G.; Le Roux, J. J. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 6 https://doi.org/10.1099/ijs.0.057067-0	journal	March 2014
To split or not to split: an opinion on dividing the genus Burkholderia Estrada-de los Santos, Paulina; Rojas-Rojas, Fernando Uriel; Tapia-García, Erika Yanet Annals of Microbiology, Vol. 66, Issue 3 https://doi.org/10.1007/s13213-015-1183-1	journal	December 2015
Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains Whitman, William B.; Woyke, Tanja; Klenk, Hans-Peter Standards in Genomic Sciences, Vol. 10, Issue 1 https://doi.org/10.1186/s40793-015-0017-x	journal	May 2015
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Stamatakis, Alexandros Bioinformatics, Vol. 30, Issue 9 https://doi.org/10.1093/bioinformatics/btu033	journal	January 2014
Burkholderia graminis sp. nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia Viallard, V.; Poirier, I.; Cournoyer, B. International Journal of Systematic Bacteriology, Vol. 48, Issue 2 https://doi.org/10.1099/00207713-48-2-549	journal	April 1998
Polyphasic Taxonomy in the Genus Burkholderia Leading to an Emended Description of the Genus and Proposition of Burkholderia vietnamiensis sp. nov. for N2-Fixing Isolates from Rice in Vietnam Gillis, M.; Van Van, T.; Bardin, R. International Journal of Systematic Bacteriology, Vol. 45, Issue 2 https://doi.org/10.1099/00207713-45-2-274	journal	April 1995
EDGAR 2.0: an enhanced software platform for comparative gene content analyses Blom, Jochen; Kreis, Julian; Spänig, Sebastian Nucleic Acids Research, Vol. 44, Issue W1 https://doi.org/10.1093/nar/gkw255	journal	April 2016
Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. Sheu, S. -Y.; Chou, J. -H.; Bontemps, C. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2 https://doi.org/10.1099/ijs.0.039859-0	journal	March 2012
The rapid generation of mutation data matrices from protein sequences Jones, David T.; Taylor, William R.; Thornton, Janet M. Bioinformatics, Vol. 8, Issue 3 https://doi.org/10.1093/bioinformatics/8.3.275	journal	January 1992
Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae Peeters, Charlotte; Meier-Kolthoff, Jan P.; Verheyde, Bart Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.00877	journal	June 2016
Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia Dobritsa, Anatoly P.; Samadpour, Mansour International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 8 https://doi.org/10.1099/ijsem.0.001065	journal	August 2016
Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella Palmer, Marike; Steenkamp, Emma T.; Coetzee, Martin P. A. Antonie van Leeuwenhoek, Vol. 110, Issue 10 https://doi.org/10.1007/s10482-017-0852-4	journal	March 2017
Phylogenetic Analysis of Burkholderia Species by Multilocus Sequence Analysis Estrada-de los Santos, Paulina; Vinuesa, Pablo; Martínez-Aguilar, Lourdes Current Microbiology, Vol. 67, Issue 1 https://doi.org/10.1007/s00284-013-0330-9	journal	February 2013
Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples Coenye, T.; Laevens, S.; Willems, A. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 51, Issue 3 https://doi.org/10.1099/00207713-51-3-1099	journal	May 2001
Dealing with incongruence in phylogenomic analyses Galtier, Nicolas; Daubin, Vincent Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 363, Issue 1512 https://doi.org/10.1098/rstb.2008.0144	journal	October 2008
Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia Suárez-Moreno, Zulma Rocío; Caballero-Mellado, Jesús; Coutinho, Bruna G. Microbial Ecology, Vol. 63, Issue 2 https://doi.org/10.1007/s00248-011-9929-1	journal	August 2011
Proposal of Burkholderia gen. nov. and Transfer of Seven Species of the Genus Pseudomonas Homology Group II to the New Genus, with the Type Species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Yabuuchi, Eiko; Kosako, Yoshimasa; Oyaizu, Hiroshi Microbiology and Immunology, Vol. 36, Issue 12 https://doi.org/10.1111/j.1348-0421.1992.tb02129.x	journal	December 1992
Diversity of Transconjugants that Acquired Plasmid pJP4 or pEMT1 after Inoculation of a Donor Strain in the A- and B-horizon of an Agricultural Soil and Description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov. Goris, Johan; Dejonghe, Winnie; Falsen, Enevold Systematic and Applied Microbiology, Vol. 25, Issue 3 https://doi.org/10.1078/0723-2020-00134	journal	January 2002
Reassessment of the taxonomic position of Burkholderia andropogonis and description of Robbsia andropogonis gen. nov., comb. nov. Lopes-Santos, Lucilene; Castro, Daniel Bedo Assumpção; Ferreira-Tonin, Mariana Antonie van Leeuwenhoek, Vol. 110, Issue 6 https://doi.org/10.1007/s10482-017-0842-6	journal	February 2017
Phylogenomic reconstruction of lactic acid bacteria: an update Zhang, Zhi-Gang; Ye, Zhi-Qiang; Yu, Li BMC Evolutionary Biology, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2148-11-1	journal	January 2011
MUSCLE: multiple sequence alignment with high accuracy and high throughput Edgar, R. C. Nucleic Acids Research, Vol. 32, Issue 5, p. 1792-1797 https://doi.org/10.1093/nar/gkh340	journal	March 2004
Burkholderia: an update on taxonomy and biotechnological potential as antibiotic producers Depoorter, Eliza; Bull, Matt J.; Peeters, Charlotte Applied Microbiology and Biotechnology, Vol. 100, Issue 12 https://doi.org/10.1007/s00253-016-7520-x	journal	April 2016
DAMBE: Software Package for Data Analysis in Molecular Biology and Evolution Xia, X. Journal of Heredity, Vol. 92, Issue 4 https://doi.org/10.1093/jhered/92.4.371	journal	July 2001
Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species Sawana, Amandeep; Adeolu, Mobolaji; Gupta, Radhey S. Frontiers in Genetics, Vol. 5 https://doi.org/10.3389/fgene.2014.00429	journal	December 2014
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0 Tamura, Koichiro; Stecher, Glen; Peterson, Daniel Molecular Biology and Evolution, Vol. 30, Issue 12 https://doi.org/10.1093/molbev/mst197	journal	October 2013
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle Desper, Richard; Gascuel, Olivier Journal of Computational Biology, Vol. 9, Issue 5 https://doi.org/10.1089/106652702761034136	journal	October 2002
List of new names and new combinations previously effectively, but not validly, published Oren, Aharon; Garrity, George M. International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 9 https://doi.org/10.1099/ijsem.0.000464	journal	September 2015
An index of substitution saturation and its application Xia, Xuhua; Xie, Zheng; Salemi, Marco Molecular Phylogenetics and Evolution, Vol. 26, Issue 1 https://doi.org/10.1016/S1055-7903(02)00326-3	journal	January 2003
Orthologs, Paralogs, and Evolutionary Genomics Koonin, Eugene V. Annual Review of Genetics, Vol. 39, Issue 1 https://doi.org/10.1146/annurev.genet.39.073003.114725	journal	December 2005
List of new names and new combinations previously effectively, but not validly, published Oren, Aharon; Garrity, George M. International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue Pt_4 https://doi.org/10.1099/ijs.0.000178	journal	April 2015

Cited By (18)

Reclassification of Burkholderia insecticola as Caballeronia insecticola comb. nov. and reliability of conserved signature indels as molecular synapomorphies Dobritsa, Anatoly P.; Samadpour, Mansour International Journal of Systematic and Evolutionary Microbiology, Vol. 69, Issue 7 https://doi.org/10.1099/ijsem.0.003431	journal	July 2019
Iron Acquisition Mechanisms and Their Role in the Virulence of Burkholderia Species Butt, Aaron T.; Thomas, Mark S. Frontiers in Cellular and Infection Microbiology, Vol. 7 https://doi.org/10.3389/fcimb.2017.00460	journal	November 2017
Trinickia dabaoshanensis sp. nov., a new name for a lost species Estrada-de los Santos, Paulina; Palmer, Marike; Steenkamp, Emma T. Archives of Microbiology, Vol. 201, Issue 9 https://doi.org/10.1007/s00203-019-01703-2	journal	July 2019
Paraburkholderia guartelaensis sp. nov., a nitrogen-fixing species isolated from nodules of Mimosa gymnas in an ecotone considered as a hotspot of biodiversity in Brazil Paulitsch, Fabiane; Dall’Agnol, Rebeca Fuzinatto; Delamuta, Jakeline Renata Marçon Archives of Microbiology, Vol. 201, Issue 10 https://doi.org/10.1007/s00203-019-01714-z	journal	August 2019
Soil characteristics determine the rhizobia in association with different species of Mimosa in central Brazil de Castro Pires, Raquel; dos Reis Junior, Fábio Bueno; Zilli, Jerri Edson Plant and Soil, Vol. 423, Issue 1-2 https://doi.org/10.1007/s11104-017-3521-5	journal	December 2017
Structure elucidation and biosynthetic locus of trinickiabactin from the plant pathogenic bacterium Trinickia caryophylli Jiao, Junjing; Du, Jiayi; Frediansyah, Andri The Journal of Antibiotics, Vol. 73, Issue 1 https://doi.org/10.1038/s41429-019-0246-0	journal	October 2019
Host–symbiont specificity determined by microbe–microbe competition in an insect gut Itoh, Hideomi; Jang, Seonghan; Takeshita, Kazutaka Proceedings of the National Academy of Sciences, Vol. 116, Issue 45 https://doi.org/10.1073/pnas.1912397116	journal	October 2019
A leguminous species exploiting alpha- and beta-rhizobia for adaptation to ultramafic and volcano-sedimentary soils: an endemic Acacia spirorbis model from New Caledonia Vincent, Bryan; Juillot, Farid; Fritsch, Emmanuel FEMS Microbiology Ecology, Vol. 95, Issue 8 https://doi.org/10.1093/femsec/fiz099	journal	June 2019
Chromids Aid Genome Expansion and Functional Diversification in the Family Burkholderiaceae diCenzo, George C.; Mengoni, Alessio; Perrin, Elena Molecular Biology and Evolution, Vol. 36, Issue 3 https://doi.org/10.1093/molbev/msy248	journal	January 2019
Phylogenomic analyses of a clade within the roseobacter group suggest taxonomic reassignments of species of the genera Aestuariivita, Citreicella, Loktanella, Nautella, Pelagibaca, Ruegeria, Thalassobius, Thiobacimonas and Tropicibacter, and the proposal of six novel genera Wirth, Joseph S.; Whitman, William B. International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 7 https://doi.org/10.1099/ijsem.0.002833	journal	July 2018
Burkholderia insecticola sp. nov., a gut symbiotic bacterium of the bean bug Riptortus pedestris Takeshita, Kazutaka; Tamaki, Hideyuki; Ohbayashi, Tsubasa International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 7 https://doi.org/10.1099/ijsem.0.002848	journal	July 2018
Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil Wilhelm, Roland C.; Murphy, Sean J. L.; Feriancek, Nicole M. International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 3 https://doi.org/10.1099/ijsem.0.004029	journal	March 2020
Emergence and features of the multipartite genome structure of the family Burkholderiaceae revealed through comparative and evolutionary genomics diCenzo, George C.; Mengoni, Alessio; Perrin, Elena https://doi.org/10.1101/382267	posted_content	August 2018
Application of qPCR assays based on haloacids transporter gene dehp2 for discrimination of Burkholderia and Paraburkholderia Su, Xianbin; Shi, Yi; Li, Ruihong BMC Microbiology, Vol. 19, Issue 1 https://doi.org/10.1186/s12866-019-1411-0	journal	February 2019
A Genomotaxonomy View of the Bradyrhizobium Genus Ormeño-Orrillo, Ernesto; Martínez-Romero, Esperanza Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01334	journal	June 2019
Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae Estrada-de los Santos, Paulina; Palmer, Marike; Chávez-Ramírez, Belén Genes, Vol. 9, Issue 8 https://doi.org/10.3390/genes9080389	journal	August 2018
Genomic Features and Insights into the Taxonomy, Virulence, and Benevolence of Plant-Associated Burkholderia Species Mannaa, Mohamed; Park, Inmyoung; Seo, Young-Su International Journal of Molecular Sciences, Vol. 20, Issue 1 https://doi.org/10.3390/ijms20010121	journal	December 2018
The synergistic effect of concatenation in phylogenomics: the case in Pantoea Palmer, Marike; Venter, Stephanus N.; McTaggart, Alistair R. PeerJ, Vol. 7 https://doi.org/10.7717/peerj.6698	journal	January 2019

Similar Records

Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae

Journal Article · Wed Aug 01 00:00:00 EDT 2018 · Genes · OSTI ID:1423489

Estrada-de los Santos, Paulina; Palmer, Marike; Chávez-Ramírez, Belén; +18 more

DNA Sequence Analyses Reveal Abundant Diversity, Endemism and Evidence for Asian Origin of the Porcini Mushrooms

Journal Article · Fri May 18 00:00:00 EDT 2012 · PLoS ONE · OSTI ID:1423489

Feng, Bang; Xu, Jianping; Wu, Gang; +5 more

Description of Freudenthalidium gen. nov. and Halluxium gen. nov. to Formally Recognize Clades Fr3 and H as Genera in the Family Symbiodiniaceae (Dinophyceae)

Journal Article · Thu Apr 30 00:00:00 EDT 2020 · Journal of Phycology · OSTI ID:1423489

Nitschke, Matthew R.; Craveiro, Sandra C.; Brandão, Cláudio; +5 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Burkholderia
Paraburkholderia
Caballeronia
phylogenomics
Robbsia andropogonis
Burkholderia rhizoxinica

Title: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

Citation Formats

References (59)

Cited By (18)

Similar Records

Related Subjects