Type II restriction modification system methylation subunit of Alicyclobacillus acidocaldarius

Lee, Brady D.; Newby, Deborah T.; Lacey, Jeffrey A.; Thompson, David N.; Thompson, Vicki S.; Apel, William A.; Roberto, Francisco F.; Reed, David W.

Type II restriction modification system methylation subunit of Alicyclobacillus acidocaldarius

Patent · Mon Feb 12 23:00:00 EST 2018

OSTI ID:1420779

Lee, Brady D.; Newby, Deborah T.; Lacey, Jeffrey A.; Thompson, David N.; Thompson, Vicki S.; Apel, William A.; Roberto, Francisco F.; Reed, David W.

Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius are provided. Further provided are methods for modulating or altering recombination inside or outside of a cell using isolated and/or purified polypeptides and/or nucleic acid sequences from Alicyclobacillus acidocaldarius.

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Research Organization:: Idaho National Laboratory (INL), Idaho Falls, ID (United States)

Sponsoring Organization:: USDOE

DOE Contract Number:: AC07-99ID13727; AC07-05ID14517

Assignee:: Battelle Energy Alliance, LLC (Idaho Falls, ID)

Patent Number(s):: 9,890,385

Application Number:: 15/395,184

OSTI ID:: 1420779

Country of Publication:: United States

Language:: English

References (116)

A new class of biodegradable materials: Poly-3-hydroxy-butyrate/steam exploded straw fiber composites. I. Thermal and impact behavior Avella, Maurizio; Martuscelli, Ezio; Pascucci, Beniamino Journal of Applied Polymer Science, Vol. 49, Issue 12, p. 2091-2103 https://doi.org/10.1002/app.1993.070491205	journal	September 1993
Comparison of the economics of acid and enzymatic hydrolysis of newsprint Grethlein, Hans E. Biotechnology and Bioengineering, Vol. 20, Issue 4, p. 503-525 https://doi.org/10.1002/bit.260200404	journal	April 1978
Partial acid hydrolysis of cellulosic materials as a pretreatment for enzymatic hydrolysis Knappert, Diane; Grethlein, Hans; Converse, Alvin Biotechnology and Bioengineering, Vol. 22, Issue 7, p. 1449-1463 https://doi.org/10.1002/bit.260220711	journal	July 1980
Simultaneous saccharification and fermentation of cellulose: Effect of ethanol on enzymatic saccharification of cellulose Ooshima, Hiroshi; Ishitani, Yohsuke; Harano, Yoshio Biotechnology and Bioengineering, Vol. 27, Issue 4, p. 389-397 https://doi.org/10.1002/bit.260270402	journal	April 1985
Thermoacidophilic Microorganisms and their Novel Biocatalysts Bertoldo, C.; Dock, C.; Antranikian, G. Engineering in Life Sciences, Vol. 4, Issue 6, p. 521-532 https://doi.org/10.1002/elsc.200402155	journal	December 2004
Oxygen effects on thermophilic microbial populations in biofilters treating nitric oxide containing off-gas streams Lee, Brady D.; Apel, William A.; Smith, William A. Environmental Progress, Vol. 20, Issue 3, p. 157-166 https://doi.org/10.1002/ep.670200311	journal	October 2001
Bacterial glycoproteins: Functions, biosynthesis and applications Upreti, Raj K.; Kumar, Manoj; Shankar, V. PROTEOMICS, Vol. 3, Issue 4, p. 363-379 https://doi.org/10.1002/pmic.200390052	journal	April 2003
Crystal structure of non-allosteric L-lactate dehydrogenase from Lactobacillus pentosus at 2.3 Å resolution: Specific interactions at subunit interfaces Uchikoba, Hiroyuki; Fushinobu, Shinya; Wakagi, Takayoshi Proteins: Structure, Function, and Bioinformatics, Vol. 46, Issue 2, p. 206-214 https://doi.org/10.1002/prot.1165	journal	December 2001
Single molecule detection of RNA reporter probes by amplification with Qβ replicase Burg, Lawrence J.; Juffras, Ann Marie; Wu, Ye Molecular and Cellular Probes, Vol. 10, Issue 4, p. 257-271 https://doi.org/10.1006/mcpr.1996.0035	journal	August 1996
The nature of lignocellulosics and their pretreatments for enzymatic hydrolysis Fan, L. T.; Lee, Young-Hyun; Gharpuray, M. M. Microbial Reactions, p. 157-187 https://doi.org/10.1007/3540116982_4	book	January 1982
Preliminary Investigation of Fungal Bioprocessing of Wheat Straw for Production of Straw-Thermoplastic Composites Thompson, David N.; Houghton, Tracy P.; Lacey, Jeffrey A. Biotechnology for Fuels and Chemicals, p. 423-436 https://doi.org/10.1007/978-1-4612-0057-4_35	book	January 2003
Dilute-Sulfuric Acid Pretreatment of Corn Stover in Pilot-Scale Reactor Schell, Daniel J.; Farmer, Jody; Newman, Millie Biotechnology for Fuels and Chemicals https://doi.org/10.1007/978-1-4612-0057-4_6	book	January 2003
Electrotransformation of Acidophilic, Heterotrophic, Gram-negative Bacteria Ward, Thomas E.; Eynard, Natalie; Teissié, Justin Electrotransformation of Bacteria, p. 94-103 https://doi.org/10.1007/978-3-662-04305-9_11	book	January 2000
Biotransformation of Toxic Organic and Inorganic Contaminants by Halophilic Bacteria Peyton, Brent M.; Mormile, Melanie R.; Alva, Victor Halophilic Microorganisms, p. 315-331 https://doi.org/10.1007/978-3-662-07656-9_23	book	January 2004
Polymerase chain reaction Erlich, Henry A. Journal of Clinical Immunology, Vol. 9, Issue 6, p. 437-447 https://doi.org/10.1007/BF00918012	journal	November 1989
Lignochemicals Hanselmann, K. W. Experientia, Vol. 38, Issue 2, p. 176-189 https://doi.org/10.1007/BF01945071	journal	February 1982
Gene cloning, sequencing, and characterization of a family 9 endoglucanase (CelA) with an unusual pattern of activity from the thermoacidophile Alicyclobacillus acidocaldarius ATCC27009 K., Eckert; F., Zielinski; Leggio, L. Lo Applied Microbiology and Biotechnology, Vol. 60, Issue 4, p. 428-436 https://doi.org/10.1007/s00253-002-1131-4	journal	December 2002
Cloning and transcriptional analysis of the Thermoanaerobacter ethanolicus strain 39E maltose ABC transport system Jones, Chris R.; Ray, Myrna; Strobel, Herbert J. Extremophiles, Vol. 6, Issue 4, p. 291-299 https://doi.org/10.1007/s00792-001-0256-1	journal	March 2002
Characterization of a β-glycosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius Lauro, Barbara Di; Rossi, Mosè; Moracci, Marco Extremophiles, Vol. 10, Issue 4, p. 301-310 https://doi.org/10.1007/s00792-005-0500-1	journal	April 2006
Glycosyl hydrolases from hyperthermophiles Sunna, Anwar; Moracci, Marco; Rossi, Mose Extremophiles, Vol. 1, Issue 1, p. 2-13 https://doi.org/10.1007/s007920050009	journal	February 1997
The first description of an archaeal hemicellulase: the xylanase from Thermococcus zilligii strain AN1 Uhl, Andreas M.; Daniel, Roy M. Extremophiles, Vol. 3, Issue 4, p. 263-267 https://doi.org/10.1007/s007920050126	journal	November 1999
Analytical strategies for the use of DNA probes Matthews, Jayne A.; Kricka, Larry J. Analytical Biochemistry, Vol. 169, Issue 1, p. 1-25 https://doi.org/10.1016/0003-2697(88)90251-5	journal	February 1988
A general method applicable to the search for similarities in the amino acid sequence of two proteins Needleman, Saul B.; Wunsch, Christian D. Journal of Molecular Biology, Vol. 48, Issue 3, p. 443-453 https://doi.org/10.1016/0022-2836(70)90057-4	journal	March 1970
Autocatalytic replication of a recombinant RNA Miele, Eleanor A.; Mills, Donald R.; Kramer, Fred Russell Journal of Molecular Biology, Vol. 171, Issue 3, p. 281-295 https://doi.org/10.1016/0022-2836(83)90094-3	journal	December 1983
NASBA^TM isothermal enzymatic in vitro nucleic acid amplification optimized for the diagnosis of HIV-1 infection Kievits, Tim; van Gemen, Bob; van Strijp, Dianne Journal of Virological Methods, Vol. 35, Issue 3, p. 273-286 https://doi.org/10.1016/0166-0934(91)90069-C	journal	December 1991
Interlaboratory testing of methods for assay of xylanase activity Bailey, Michael J.; Biely, Peter; Poutanen, Kaisa Journal of Biotechnology, Vol. 23, Issue 3, p. 257-270 https://doi.org/10.1016/0168-1656(92)90074-J	journal	May 1992
Specificity of the protein secretory apparatus: secretion of the heat-labile enterotoxin B subunit pentamers by different species of Gram- bacteria Michel, Linda Overbye; Sandkvist, Maria; Bagdasarian, Michael Gene, Vol. 152, Issue 1, p. 41-45 https://doi.org/10.1016/0378-1119(94)00691-K	journal	January 1995
Pretreatment for enhanced hydrolysis of cellulosic biomass Grethlein, Hans E. Biotechnology Advances, Vol. 2, Issue 1, p. 43-62 https://doi.org/10.1016/0734-9750(84)90240-4	journal	January 1984
Recent advances in heterologous gene expression in Escherichia coli Olins, Peter O.; Lee, Stephen C. Current Opinion in Biotechnology, Vol. 4, Issue 5, p. 520-525 https://doi.org/10.1016/0958-1669(93)90071-4	journal	October 1993
Yeast systems for the expression of heterologous gene products Buckholz, Richard G. Current Opinion in Biotechnology, Vol. 4, Issue 5, p. 538-542 https://doi.org/10.1016/0958-1669(93)90074-7	journal	October 1993
Current applications of COS cell based transient expression systems Edwards, Caroline P.; Aruffo, Alejandro Current Opinion in Biotechnology, Vol. 4, Issue 5, p. 558-563 https://doi.org/10.1016/0958-1669(93)90077-A	journal	October 1993
Baculovirus systems for the expression of human gene products Luckow, Verne A. Current Opinion in Biotechnology, Vol. 4, Issue 5, p. 564-572 https://doi.org/10.1016/0958-1669(93)90078-B	journal	October 1993
Comparison of pretreatment methods on the basis of available surface area Thompson, David N.; Chen, Hsin-Chih; Grethlein, Hans E. Bioresource Technology, Vol. 39, Issue 2, p. 155-163 https://doi.org/10.1016/0960-8524(92)90135-K	journal	January 1992
Changes in the Rate of Enzymatic Hydrolysis and Surface Area Available to Cellulase with Pretreatment Methods Thompson, D. N.; Chen, H. -C.; Grethlein, H. E. Biotechnology in Pulp and Paper Manufacture, p. 329-338 https://doi.org/10.1016/B978-0-409-90192-4.50035-2	book	December 1989
Chapter 9 - Import of Solutes by ABC Transporters - The Maltose and Other Systems Schneider, Erwin ABC Proteins, p. 157-185 https://doi.org/10.1016/B978-012352551-2/50010-X	book	December 2002
Development of gas phase bioreactors for the removal of nitrogen oxides from synthetic flue gas streams Flanagan, William P.; Apel, William A.; Barnes, Joni M. Fuel, Vol. 81, Issue 15, p. 1953-1961 https://doi.org/10.1016/S0016-2361(02)00130-8	journal	October 2002
Rapid production of thermostable cellulase-free xylanase by a strain of Bacillus subtilis and its properties Sá-Pereira, Paula; Mesquita, Alexandra; Duarte, José C. Enzyme and Microbial Technology, Vol. 30, Issue 7, p. 924-933 https://doi.org/10.1016/S0141-0229(02)00034-0	journal	June 2002
PCR ligation mutagenesis in transformable streptococci: application and efficiency Lau, Peter C. Y.; Sung, Chang Kyoo; Lee, Janet H. Journal of Microbiological Methods, Vol. 49, Issue 2, p. 193-205 https://doi.org/10.1016/S0167-7012(01)00369-4	journal	April 2002
From genes to protein structure and function: novel applications of computational approaches in the genomic era Skolnick, Jeffrey; Fetrow, Jacquelyn S. Trends in Biotechnology, Vol. 18, Issue 1, p. 34-39 https://doi.org/10.1016/S0167-7799(99)01398-0	journal	January 2000
Biochemistry and genetics of microbial xylanases Jeffries, Thomas W. Current Opinion in Biotechnology, Vol. 7, Issue 3, p. 337-342 https://doi.org/10.1016/S0958-1669(96)80041-3	journal	June 1996
The acid hydrolysis of sugarcane bagasse hemicellulose to produce xylose, arabinose, glucose and other products Lavarack, B. P.; Griffin, G. J.; Rodman, D. Biomass and Bioenergy, Vol. 23, Issue 5, p. 367-380 https://doi.org/10.1016/S0961-9534(02)00066-1	journal	November 2002
Lactate dehydrogenase from the hyperthermophilic bacterium Thermotoga maritima: the crystal structure at 2.1 å resolution reveals strategies for intrinsic protein stabilization Auerbach, Günter; Ostendorp, Ralf; Prade, Lars Structure, Vol. 6, Issue 6, p. 769-781 https://doi.org/10.1016/S0969-2126(98)00078-1	journal	June 1998
Glycosidases and glycosyl transferases in glycoside and oligosaccharide synthesis Crout, David H. G.; Vic, Gabin Current Opinion in Chemical Biology, Vol. 2, Issue 1, p. 98-111 https://doi.org/10.1016/S1367-5931(98)80041-0	journal	February 1998
Ethanol production from biomass: technology and commercialization status Mielenz, Jonathan R. Current Opinion in Microbiology, Vol. 4, Issue 3, p. 324-329 https://doi.org/10.1016/S1369-5274(00)00211-3	journal	June 2001
Microbial hemicellulases Shallom, Dalia; Shoham, Yuval Current Opinion in Microbiology, Vol. 6, Issue 3, p. 219-228 https://doi.org/10.1016/S1369-5274(03)00056-0	journal	June 2003
Purification and characterization of an acidophilic xylanase from Aureobasidium pullulans var. melanigenum and sequence analysis of the encoding gene Ohta, Kazuyoshi; Moriyama, Satoshi; Tanaka, Hidenori Journal of Bioscience and Bioengineering, Vol. 92, Issue 3, p. 262-270 https://doi.org/10.1016/S1389-1723(01)80260-7	journal	January 2001
Functional reconstitution of a maltose ATP-binding cassette transporter from the thermoacidophilic gram-positive bacterium Alicyclobacillus acidocaldarius Scheffel, Frank; Fleischer, Rebecca; Schneider, Erwin Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1656, Issue 1, p. 57-65 https://doi.org/10.1016/j.bbabio.2004.01.005	journal	May 2004
Isolation and characterization of a new family 42 β-galactosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius: Identification of the active site residues Di Lauro, Barbara; Strazzulli, Andrea; Perugino, Giuseppe Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1784, Issue 2, p. 292-301 https://doi.org/10.1016/j.bbapap.2007.10.013	journal	February 2008
Ethanol from lignocellulosic biomass techno-economic performance in short-, middle- and long-term Hamelinck, Carlo N; Hooijdonk, Geertje van; Faaij, André PC Biomass and Bioenergy, Vol. 28, Issue 4, p. 384-410 https://doi.org/10.1016/j.biombioe.2004.09.002	journal	April 2005
Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design Chica, Roberto A.; Doucet, Nicolas; Pelletier, Joelle N. Current Opinion in Biotechnology, Vol. 16, Issue 4, p. 378-384 https://doi.org/10.1016/j.copbio.2005.06.004	journal	August 2005
Xylanases, xylanase families and extremophilic xylanases Collins, Tony; Gerday, Charles; Feller, Georges FEMS Microbiology Reviews, Vol. 29, Issue 1, p. 3-23 https://doi.org/10.1016/j.femsre.2004.06.005	journal	January 2005
X-ray Structures of the Maltose–Maltodextrin-binding Protein of the Thermoacidophilic Bacterium Alicyclobacillus acidocaldarius Provide Insight into Acid Stability of Proteins Schäfer, Karsten; Magnusson, Ulrika; Scheffel, Frank Journal of Molecular Biology, Vol. 335, Issue 1, p. 261-274 https://doi.org/10.1016/j.jmb.2003.10.042	journal	January 2004
Prediction of protein function from protein sequence and structure Whisstock, James C.; Lesk, Arthur M. Quarterly Reviews of Biophysics, Vol. 36, Issue 3, p. 307-340 https://doi.org/10.1017/S0033583503003901	journal	January 1999
Conversion of a β-Ketoacyl Synthase to a Malonyl Decarboxylase by Replacement of the Active-Site Cysteine with Glutamine Witkowski, Andrzej; Joshi, Anil K.; Lindqvist, Ylva Biochemistry, Vol. 38, Issue 36, p. 11643-11650 https://doi.org/10.1021/bi990993h	journal	September 1999
Purification and Characterization of a Novel Thermo-Alkali-Stable Catalase from Thermus brockianus Thompson, Vicki S.; Schaller, Kastli D.; Apel, William A. Biotechnology Progress, Vol. 19, Issue 4, p. 1292-1299 https://doi.org/10.1021/bp034040t	journal	January 2003
Dilute Acid Pretreatment, Enzymatic Saccharification, and Fermentation of Rice Hulls to Ethanol Saha, Badal C.; Iten, Loren B.; Cotta, Michael A. Biotechnology Progress, Vol. 21, Issue 3, p. 816-822 https://doi.org/10.1021/bp049564n	journal	January 2005
Chemical Makers Try Biotech Paths: Vitamins and a new DuPont polyester are paving the way for biocatalysis use McCoy, Michael Chemical & Engineering News, Vol. 76, Issue 25, p. 13-19 https://doi.org/10.1021/cen-v076n025.p013	journal	June 1998
Glycosylation Engineering: Controlling personalities tame wild sugars on proteins and natural products Borman, STU Chemical & Engineering News Archive, Vol. 84, Issue 36, p. 13-22 https://doi.org/10.1021/cen-v084n036.p013	journal	September 2006
Quantitative Saccharification of Wood and Cellulose Saeman, Jerome F.; Bubl, Janet L.; Harris, Elwin E. Industrial & Engineering Chemistry Analytical Edition, Vol. 17, Issue 1, p. 35-37 https://doi.org/10.1021/i560137a008	journal	January 1945
The Effect of Flow Rate of Compressed Hot Water on Xylan, Lignin, and Total Mass Removal from Corn Stover Liu, Chaogang; Wyman, Charles E. Industrial & Engineering Chemistry Research, Vol. 42, Issue 21, p. 5409-5416 https://doi.org/10.1021/ie030458k	journal	September 2003
The Synthesis of Bovine Insulin by the Solid Phase Method Marglin, B.; Merrifield, R. B. Journal of the American Chemical Society, Vol. 88, Issue 21, p. 5051-5052 https://doi.org/10.1021/ja00973a068	journal	November 1966
Biomechanical and Biochemical Pulping of Sugarcane Bagasse with Ceriporiopsis subvermispora Fungal and Xylanase Pretreatments Ramos, Juan; González, Mercedes; Ramírez, Felipe Journal of Agricultural and Food Chemistry, Vol. 49, Issue 3, p. 1180-1186 https://doi.org/10.1021/jf0011586	journal	March 2001
Production of a cellulase-free xylanase from agricultural waste materials by a thermotolerant Streptomyces sp. Techapun, Charin; Sinsuwongwat, Suphawat; Poosaran, Naiyatat Biotechnology Letters, Vol. 23, Issue 20, p. 1685-1689 https://doi.org/10.1023/A:1012448229555	journal	October 2001
Lignocellulose biodegradation: Fundamentals and applications Malherbe, S.; Cloete, T. E. Reviews in Environmental Science and Bio/Technology, Vol. 1, Issue 2, p. 105-114 https://doi.org/10.1023/A:1020858910646	journal	June 2002
Kenealy, William R.; Jeffries, Thomas W. Biotechnology Letters, Vol. 25, Issue 19, p. 1619-1623 https://doi.org/10.1023/A:1025668031928	journal	October 2003
Continuous cultures of fused cells secreting antibody of predefined specificity Köhler, G.; Milstein, C. Nature, Vol. 256, Issue 5517, p. 495-497 https://doi.org/10.1038/256495a0	journal	August 1975
Immunogenicity and protective efficacy of a tuberculosis DNA vaccine Huygen, Kris; Content, Jean; Denis, Olivier Nature Medicine, Vol. 2, Issue 8, p. 893-898 https://doi.org/10.1038/nm0896-893	journal	August 1996
T and R states in the crystals of bacterial L–lactate dehydrogenase reveal the mechanism for allosteric control Iwata, So; Kamata, Kenji; Yoshida, Sumiko Nature Structural Biology, Vol. 1, Issue 3, p. 176-185 https://doi.org/10.1038/nsb0394-176	journal	March 1994
An extremely thermostable xylanase from the thermophilic eubacterium Thermotoga Simpson, H D; Haufler, U R; Daniel, R M Biochemical Journal, Vol. 277, Issue 2, p. 413-417 https://doi.org/10.1042/bj2770413	journal	July 1991
Regulation of the central glycolytic genes in Bacillus subtilis: binding of the repressor CggR to its single DNA target sequence is modulated by fructose-1,6-bisphosphate Doan, Thierry; Aymerich, Stéphane Molecular Microbiology, Vol. 47, Issue 6, p. 1709-1721 https://doi.org/10.1046/j.1365-2958.2003.03404.x	journal	March 2003
A thermoacidophilic endoglucanase (CelB) from Alicyclobacillus acidocaldarius displays high sequence similarity to arabinofuranosidases belonging to family 51 of glycoside hydrolases Eckert, Kelvin; Schneider, Erwin European Journal of Biochemistry, Vol. 270, Issue 17, p. 3593-3602 https://doi.org/10.1046/j.1432-1033.2003.03744.x	journal	August 2003
Improved tools for biological sequence comparison. Pearson, W. R.; Lipman, D. J. Proceedings of the National Academy of Sciences, Vol. 85, Issue 8, p. 2444-2448 https://doi.org/10.1073/pnas.85.8.2444	journal	April 1988
Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format. Kwoh, D. Y.; Davis, G. R.; Whitfield, K. M. Proceedings of the National Academy of Sciences, Vol. 86, Issue 4, p. 1173-1177 https://doi.org/10.1073/pnas.86.4.1173	journal	February 1989
Genetic disease detection and DNA amplification using cloned thermostable ligase. Barany, F. Proceedings of the National Academy of Sciences, Vol. 88, Issue 1, p. 189-193 https://doi.org/10.1073/pnas.88.1.189	journal	January 1991
Two Glyceraldehyde-3-phosphate Dehydrogenases with Opposite Physiological Roles in a Nonphotosynthetic Bacterium Fillinger, Sabine; Boschi-Muller, Sandrine; Azza, Saı̈d Journal of Biological Chemistry, Vol. 275, Issue 19, p. 14031-14037 https://doi.org/10.1074/jbc.275.19.14031	journal	May 2000
Microbial β-Glucosidases: Cloning, Properties, and Applications Bhatia, Yukti; Mishra, Saroj; Bisaria, V. S. Critical Reviews in Biotechnology, Vol. 22, Issue 4, p. 375-407 https://doi.org/10.1080/07388550290789568	journal	January 2002
Synthesis of an amplifiable reporter RNA for bioassays Chu, Barbara C. F.; Kramer, Fred Russell; Orgel, Leslie E. Nucleic Acids Research, Vol. 14, Issue 14, p. 5591-5603 https://doi.org/10.1093/nar/14.14.5591	journal	January 1986
A comparison of non-radioisotopic hybridization assay methods using fluorescent, chemiluminescent and enzyme labeled synthetic oligodeoxyribonucleotide probes Urdea, Mickey S.; Warner, Brian D.; Running, Joyce A. Nucleic Acids Research, Vol. 16, Issue 11, p. 4937-4956 https://doi.org/10.1093/nar/16.11.4937	journal	January 1988
Strand displacement amplification—an isothermal, in vitro DNA amplification technique Walker, G. Terrance; Fraiser, Melinda S.; Schram, James L. Nucleic Acids Research, Vol. 20, Issue 7, p. 1691-1696 https://doi.org/10.1093/nar/20.7.1691	journal	January 1992
Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: biased distribution of acidic residues and importance of Asp37 for catalysis at low pH Fushinobu, S.; Ito, K.; Konno, M. Protein Engineering Design and Selection, Vol. 11, Issue 12, p. 1121-1128 https://doi.org/10.1093/protein/11.12.1121	journal	December 1998
Hackney, F. L., et al. Chondrosarcoma of the jaws Manstein, Carl H. Plastic and Reconstructive Surgery, Vol. 89, Issue 2 https://doi.org/10.1097/00006534-199202000-00091	journal	January 1992
Characterization of a new bacteriophage which infects bacteria of the genus Acidiphilium Ward, T. E.; Bruhn, D. F.; Shean, M. L. Journal of General Virology, Vol. 74, Issue 11, p. 2419-2425 https://doi.org/10.1099/0022-1317-74-11-2419	journal	November 1993
Generation of transposon insertion mutant libraries for Gram-positive bacteria by electroporation of phage Mu DNA transposition complexes Pajunen, M. I. Microbiology, Vol. 151, Issue 4, p. 1209-1218 https://doi.org/10.1099/mic.0.27807-0	journal	April 2005
Powers and Pitfalls in Sequence Analysis: The 70% Hurdle Bork, P. Genome Research, Vol. 10, Issue 4, p. 398-400 https://doi.org/10.1101/gr.10.4.398	journal	April 2000
Crystal structures of the effector-binding domain of repressor Central glycolytic gene Regulator from Bacillus subtilis reveal ligand-induced structural changes upon binding of several glycolytic intermediates Řezáčová, Pavlína; Kožíšek, Milan; Moy, Shiu F. Molecular Microbiology, Vol. 69, Issue 4, p. 895-910 https://doi.org/10.1111/j.1365-2958.2008.06318.x	journal	August 2008
The Crystal And Molecular Structure Of Yeast L‐Lactate Dehydrogenase (Cytochrome b₂): An Electron Microscopy Study by Negative Staining and Freeze-Etching Techniques Olive, J.; Barbotin, J. N.; Risler, J. L. International Journal of Peptide and Protein Research, Vol. 5, Issue 4, p. 219-228 https://doi.org/10.1111/j.1399-3011.1973.tb03456.x	journal	July 1973
Purification, Properties and Structural Aspects of a Thermoacidophilic alpha-Amylase from Alicyclobacillus Acidocaldarius Atcc 27009 Schwermann, Birgit; Pfau, Karsten; Liliensiek, Birgit European Journal of Biochemistry, Vol. 226, Issue 3, p. 981-991 https://doi.org/10.1111/j.1432-1033.1994.00981.x	journal	December 1994
Molecular diversity of thermophilic cellulolytic and hemicellulolytic bacteria Bergquist, Peter L.; Gibbs, Moreland D.; Morris, Daniel D. FEMS Microbiology Ecology, Vol. 28, Issue 2, p. 99-110 https://doi.org/10.1111/j.1574-6941.1999.tb00565.x	journal	February 1999
Cellulase-free xylanases from Bacillus and other microorganisms Subramaniyan, S.; Prema, P. FEMS Microbiology Letters, Vol. 183, Issue 1, p. 1-7 https://doi.org/10.1111/j.1574-6968.2000.tb08925.x	journal	February 2000
Xylanases in bleaching: From an idea to the industry Viikari, Liisa; Kantelinen, Anne; Sundquist, Jorma FEMS Microbiology Reviews, Vol. 13, Issue 2-3, p. 335-350 https://doi.org/10.1111/j.1574-6976.1994.tb00053.x	journal	March 1994
Molecular and biotechnological aspects of xylanases Kulkarni, Neeta; Shendye, Abhay; Rao, Mala FEMS Microbiology Reviews, Vol. 23, Issue 4, p. 411-456 https://doi.org/10.1111/j.1574-6976.1999.tb00407.x	journal	July 1999
Measurement of fumonisins in corn with a fiber optic fluoroimmunosensor Thompson, Vicki S.; Maragos, Chris M.; Thompson, Richard B. Advances in Fluorescence Sensing Technology III, Vol. 2980 https://doi.org/10.1117/12.273560	conference	May 1997
The Path Forward for Biofuels and Biomaterials Ragauskas, Arthur J.; Williams, Charlotte K.; Davison, Brian H. Science, Vol. 311, Issue 5760, p. 484-489 https://doi.org/10.1126/science.1114736	journal	January 2006
Deciphering the message in protein sequences: tolerance to amino acid substitutions Bowie, J.; Reidhaar-Olson, J.; Lim, W. Science, Vol. 247, Issue 4948, p. 1306-1310 https://doi.org/10.1126/science.2315699	journal	March 1990
Catalytic Plasticity of Fatty Acid Modification Enzymes Underlying Chemical Diversity of Plant Lipids Broun, Pierre; Shanklin, John; Whittle, Ed Science, Vol. 282, Issue 5392, p. 1315-1317 https://doi.org/10.1126/science.282.5392.1315	journal	November 1998
Ethanol Production by Thermophilic Bacteria: Fermentation of Cellulosic Substrates by Cocultures of Clostridium thermocellum and Clostridium thermohydrosulfuricum Ng, Thomas K.; Ben-Bassat, Arie; Zeikus, J. G. Applied and Environmental Microbiology, Vol. 41, Issue 6 https://doi.org/10.1128/AEM.41.6.1337-1343.1981	journal	January 1981
Genes encoding two different beta-glucosidases of Thermoanaerobacter brockii are clustered in a common operon. Breves, R.; Bronnenmeier, K.; Wild, N. Applied and environmental microbiology, Vol. 63, Issue 10 https://doi.org/10.1128/AEM.63.10.3902-3910.1997	journal	January 1997
Purification and Properties of Two Thermostable Alkaline Xylanases from an Alkaliphilic Bacillussp Gessesse, Amare Applied and Environmental Microbiology, Vol. 64, Issue 9 https://doi.org/10.1128/AEM.64.9.3533-3535.1998	journal	September 1998
Maltose and Maltodextrin Transport in the Thermoacidophilic Gram-Positive Bacterium Alicyclobacillus acidocaldarius Is Mediated by a High-Affinity Transport System That Includes a Maltose Binding Protein Tolerant to Low pH Hülsmann, A.; Lurz, R.; Scheffel, F. Journal of Bacteriology, Vol. 182, Issue 22, p. 6292-6301 https://doi.org/10.1128/JB.182.22.6292-6301.2000	journal	November 2000
Melamine Deaminase and Atrazine Chlorohydrolase: 98 Percent Identical but Functionally Different Seffernick, J. L.; de Souza, M. L.; Sadowsky, M. J. Journal of Bacteriology, Vol. 183, Issue 8, p. 2405-2410 https://doi.org/10.1128/JB.183.8.2405-2410.2001	journal	April 2001
Rapid chemiluminescent nucleic acid assays for detection of TEM-1 beta-lactamase-mediated penicillin resistance in Neisseria gonorrhoeae and other bacteria. Sanchez-Pescador, R.; Stempien, M. S.; Urdea, M. S. Journal of Clinical Microbiology, Vol. 26, Issue 10 https://doi.org/10.1128/JCM.26.10.1934-1938.1988	journal	January 1988
Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability Vieille, C.; Zeikus, G. J. Microbiology and Molecular Biology Reviews, Vol. 65, Issue 1, p. 1-43 https://doi.org/10.1128/MMBR.65.1.1-43.2001	journal	March 2001
Microbial Cellulose Utilization: Fundamentals and Biotechnology Lynd, L. R.; Weimer, P. J.; van Zyl, W. H. Microbiology and Molecular Biology Reviews, Vol. 66, Issue 3, p. 506-577 https://doi.org/10.1128/MMBR.66.3.506-577.2002	journal	September 2002
Transformation of Acidiphilium by electroporation and conjugation Glenn, Anne W.; Roberto, Frank F.; Ward, Thomas E. Canadian Journal of Microbiology, Vol. 38, Issue 5, p. 387-393 https://doi.org/10.1139/m92-065	journal	May 1992
Overview and Evaluation of Fuel Ethanol from Cellulosic Biomass: Technology, Economics, the Environment, and Policy Lynd, Lee R. Annual Review of Energy and the Environment, Vol. 21, Issue 1, p. 403-465 https://doi.org/10.1146/annurev.energy.21.1.403	journal	November 1996
Potential and utilization of thermophiles and thermostable enzymes in biorefining Turner, Pernilla; Mamo, Gashaw; Karlsson, Eva Microbial Cell Factories, Vol. 6, Issue 1, 9 https://doi.org/10.1186/1475-2859-6-9	journal	January 2007
Purification and Properties of Acid Stable Xylanases from Aspergillus kawachii Ito, Kiyoshi; Ogasawara, Hironobu; Sugimoto, Takashi Bioscience, Biotechnology, and Biochemistry, Vol. 56, Issue 4, p. 547-550 https://doi.org/10.1271/bbb.56.547	journal	January 1992
Microbial Pretreatment of Biomass: Potential for Reducing Severity of Thermochemical Biomass Pretreatment Keller, Fred A.; Hamilton, Jenny E.; Nguyen, Quang A. Applied Biochemistry and Biotechnology, Vol. 105, Issue 1-3, p. 27-42 https://doi.org/10.1385/ABAB:105:1-3:27	journal	January 2003
Dilute-Sulfuric Acid Pretreatment of Corn Stover in Pilot-Scale Reactor: Investigation of Yields, Kinetics, and Enzymatic Digestibilities of Solids Schell, Daniel J.; Farmer, Jody; Newman, Millie Applied Biochemistry and Biotechnology, Vol. 105, Issue 1-3, p. 69-86 https://doi.org/10.1385/ABAB:105:1-3:69	journal	January 2003
Preliminary Investigation of Fungal Bioprocessing of Wheat Straw for Production of Straw-Thermoplastic Composites Thompson, David N.; Houghton, Tracy P.; Lacey, Jeffrey A. Applied Biochemistry and Biotechnology, Vol. 106, Issue 1-3, p. 423-436 https://doi.org/10.1385/ABAB:106:1-3:423	journal	January 2003
Fungal Upgrading of Wheat Straw for Straw-Thermoplastics Production Houghton, Tracy P.; Thompson, David N.; Hess, J. Richard Applied Biochemistry and Biotechnology, Vol. 113, Issue 1-3, p. 71-93 https://doi.org/10.1385/ABAB:113:1-3:071	journal	January 2004
Industrial Scale-Up of pH-Controlled Liquid Hot Water Pretreatment of Corn Fiber for Fuel Ethanol Production Mosier, Nathan S.; Hendrickson, Richard; Brewer, Mark Applied Biochemistry and Biotechnology, Vol. 125, Issue 2, p. 77-98 https://doi.org/10.1385/ABAB:125:2:077	journal	January 2005
Manufacture of Xylose-Based Fermentation Media from Corncobs by Posthydrolysis of Autohydrolysis Liquors Garrote, Gil; Domínguez, Herminia; Parajó, Juan C. Applied Biochemistry and Biotechnology, Vol. 95, Issue 3, p. 195-208 https://doi.org/10.1385/ABAB:95:3:195	journal	January 2001
Process Design Report for Stover Feedstock: Lignocellulosic Biomass to Ethanol Process Design and Economics Utilizing Co-Current Dilute Acid Prehydrolysis and Enzymatic Hydrolysis for Corn Stover Aden, A.; Ruth, M.; Ibsen, K. https://doi.org/10.2172/1218326	report	June 2002
Biomass as Feedstock for a Bioenergy and Bioproducts Industry: The Technical Feasability of a Billion-Ton Annual Supply Perlack, Robert D.; Wright, Lynn L.; Turhollow, Anthony F. https://doi.org/10.2172/885984	report	April 2005
Bioengineering for Microbial Inulinases: Trends and Applications Singh, Puneet Kumar; Kumar, Vishal; Yadav, Ruby Current Protein & Peptide Science, Vol. 18, Issue 9, p. 966-972 https://doi.org/10.2174/1389203718666161122112251	journal	July 2017

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